ID   U57360; SV 1; linear; mRNA; STD; VRL; 2053 BP.
XX
AC   U57360;
XX
DT   06-FEB-1997 (Rel. 50, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 4)
XX
DE   Sorghum mosaic virus strain M polyprotein mRNA, partial cds.
XX
KW   .
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-2053
RA   Mirkov T.E., Yang Z.N.;
RT   "Sequence and relationships of Sugarcane Mosaic and Sorghum Mosaic Virus
RT   strains, and development of RT-PCR based RFLPs for strain discrimination";
RL   Phytopathology 87:932-939(1997).
XX
RN   [2]
RP   1-2053
RA   Mirkov T.E.;
RT   ;
RL   Submitted (02-MAY-1996) to the INSDC.
RL   T. Erik Mirkov, Plant Pathology, Texas A&M, 2415 E. Hwy 83, Weslaco, TX
RL   78596, USA
XX
DR   MD5; bd12efb2abb542f48d295cf66048ffc5.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2053
FT                   /organism="Sorghum mosaic virus"
FT                   /strain="M"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:32619"
FT   mat_peptide     <1..828
FT                   /product="nuclear inclusion II protein"
FT   CDS             <1..1818
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:P89210"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:P89210"
FT                   /protein_id="AAB70864.1"
FT                   /translation="CDADGSQFDSSLTPYLINAVLDIRLHFMEDWSIGEKMLRNLYTEI
FT                   VYTPIATPDGSVIKKFKGNNSGQPSTVVDNTLMVIIAFNYTMFSCGIEADMIDEICKMY
FT                   ANGDDLLLAIRPDYEHLLDNFSKHFADLGLNFDFTSRTRDRTELWFMSTRGIKIDNMYI
FT                   PKLEQERIVAILEWDRSLLPQYRLEAICAAMVESWGYPQLLHEIRKFYAWILEMQPFAT
FT                   LAKEGLAPYIAETALRNLYTGEGIKEGELDVYYTQFLKDLPEYIEDELIDVRHQAGGGT
FT                   VDAGAATAEATAQAQRDAAAKAQRDADAKKKADDEAAERQRQEAAAKKKADDDAKAKAD
FT                   ADAKAKSDADAKKKADDEAARKAQNQKDKDVDVGTSGTVAVPKLKAMSKKMKLPQAKGK
FT                   NILHLDFLLGYKPQQQDISNTRATRDEFDRWYDALQKEYELDDTQMTVVASGLMVWVIE
FT                   NGCSPNINGVWTMMDGDEQRKFPLKPVIEYASPTFRQIMHHFSDAAEAYIEYRNSTERY
FT                   MPRYGLQRNLTDYNLARYAFDFYEITSRTPARAREAHMQMKAAAVRGSNTRMFGLDGNV
FT                   GESQENTERHTAGDVSRNMHSLLGVQQHH"
FT   variation       9
FT                   /replace="a"
FT                   /note="nucleotide difference between two independent clones
FT                   for this strain"
FT   variation       264
FT                   /replace="g"
FT                   /note="nucleotide difference between two independent clones
FT                   for this strain; results in amino acid change from F to L"
FT   mat_peptide     829..1815
FT                   /product="coat protein"
FT   3'UTR           1819..2053
XX
SQ   Sequence 2053 BP; 681 A; 385 C; 491 G; 496 T; 0 other;
     tgtgatgccg atggttcgca attcgatagt tcactaacac cttatctcat caatgcagtg        60
     ttggacatca gattgcattt tatggaagat tggagtatcg gagagaaaat gctcaggaac       120
     ctttatacag aaattgttta tactcctata gcaacaccag atggatccgt cataaagaaa       180
     ttcaaaggaa ataatagcgg acaaccatca accgtcgttg ataacacact aatggtgatc       240
     atagcgttta actatacaat gttttcatgt gggatcgaag ctgatatgat agatgaaata       300
     tgcaaaatgt atgcaaatgg ggacgatctt ttgttagcaa tacggccaga ttacgaacat       360
     ttattggata atttctcaaa acactttgct gatctaggtc ttaacttcga ttttacatca       420
     cgcacaagag ataggacgga attgtggttt atgtcgacac gaggcattaa aattgacaat       480
     atgtacatcc caaaattgga acaggaaaga atcgttgcta ttttagaatg ggatagatca       540
     ttattaccac aatatagact ggaggcgata tgtgctgcaa tggtggaatc atggggatat       600
     ccacaattat tacatgagat taggaaattt tatgcttgga ttctcgaaat gcagccattc       660
     gccactctag cgaaagaagg acttgccccg tacatagcag aaacggcttt gcgtaatctt       720
     tatacagggg aaggaataaa agaaggggag ttggatgttt attacacaca attcctcaaa       780
     gatttgcctg aatacataga ggatgaacta attgacgtgc gccatcaggc aggaggcggt       840
     acagtagatg caggagcagc cacagcagaa gcaacagcac aagcacagcg tgatgcagca       900
     gcgaaagctc aacgagatgc tgatgcaaag aagaaggcgg atgatgaagc ggcagagagg       960
     cagagacaag aagccgcggc aaagaagaaa gctgatgatg atgcaaaagc taaagctgat      1020
     gcggatgcta aagcaaaatc agatgctgat gcgaaaaaga aagcagacga cgaagcagca      1080
     agaaaagcac aaaatcaaaa agacaaggat gtggatgttg gcacatctgg cacggtggca      1140
     gtgcctaagc tcaaagcaat gtccaagaaa atgaaattac cacaagcaaa agggaaaaac      1200
     attttacact tggattttct tttgggatat aagccacaac aacaagacat ttcaaacacc      1260
     agagccacac gggatgagtt cgataggtgg tatgatgcat tgcagaagga atatgaacta      1320
     gatgatacgc agatgacagt agtcgcaagc ggactcatgg tttgggtcat agagaacgga      1380
     tgctcaccca atattaatgg tgtttggaca atgatggatg gagatgagca aaggaaattt      1440
     ccactcaagc ccgttattga atatgcatct ccaacattca gacagataat gcaccacttt      1500
     agtgatgcag ctgaagcgta catagagtat cggaactcga cagagcgtta catgccaaga      1560
     tacggacttc agcgaaactt aaccgactat aacctagccc gatacgcatt cgatttctat      1620
     gaaataactt cgcgtacacc agcgagagct agagaggccc acatgcagat gaaagcagca      1680
     gcagtgcgtg gatcaaacac gcgcatgttt ggcttggatg ggaatgtcgg tgagagtcag      1740
     gagaatacag aacgtcacac agctggtgat gtgagtcgca atatgcactc ccttcttgga      1800
     gtgcaacagc atcactgatg tactgagatc ttcattgcag ttttaagagt attttatata      1860
     tttactattt cagtgagggt ctccctcctt agtattatat atgtacttta gaaatagtag      1920
     tcattctgca ggggagtgag gtttacctcc aaccctatgg ttactatttc ctactagcgt      1980
     cgaactacat tacggacacc ctgttgtgtg gttctaccac gagtcaggag ctgcgagtat      2040
     tgtagcaaga gac                                                         2053
//