ID U57359; SV 1; linear; mRNA; STD; VRL; 2053 BP. XX AC U57359; XX DT 06-FEB-1997 (Rel. 50, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 4) XX DE Sorghum mosaic virus strain I polyprotein mRNA, partial cds. XX KW . XX OS Sorghum mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2053 RA Mirkov T.E., Yang Z.N.; RT "Sequence and relationships of Sugarcane Mosaic and Sorghum Mosaic Virus RT strains, and development of RT-PCR based RFLPs for strain discrimination"; RL Phytopathology 87:932-939(1997). XX RN [2] RP 1-2053 RA Mirkov T.E.; RT ; RL Submitted (02-MAY-1996) to the INSDC. RL T. Erik Mirkov, Plant Pathology, Texas A&M, 2415 E. Hwy 83, Weslaco, TX RL 78596, USA XX DR MD5; 7d59a9ff161a0945b48bb06d65aa3eaa. XX FH Key Location/Qualifiers FH FT source 1..2053 FT /organism="Sorghum mosaic virus" FT /strain="I" FT /mol_type="mRNA" FT /db_xref="taxon:32619" FT mat_peptide <1..828 FT /product="nuclear inclusion II protein" FT CDS <1..1818 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:P89209" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:P89209" FT /protein_id="AAB70863.1" FT /translation="CDADGSQFDSSLTPYLINAVLDIRLHFMEDWSIGEKMLRNLYTEI FT VYTPIATPDGSVIKKFKGNNSGQPSTVVDNTLMVIIAFNYTMLSCGIEADMIDEICKMY FT ANGDDLLLAIRPDYEHLLDNFSKHFADLGLNFDFTSRTRDRTELWFMSTRGIKIDNMYI FT PKLEQERIVAILEWDRSLLPQYRLEAICAAMVESWGYPQLLHEIRKFYAWILEMQPFAT FT LAKEGLAPYIAETALRNLYTGEGIKEGELDVYYTQFLKDLPEYIEDELIDVRHQAGGGT FT VDAGATTAEATAQAQRDATAKAQRDADAKKKADDEAAERQRQDAAAKKKADDDAKAKAD FT ADAKAKSDADAKKKADDEAARKAQNQKDKDVDVGTSGTVAVPRLKAMSKKMKLPQAKGK FT NILHLDFLLGYKPQQQDISNTRATRDEFDRWYDALQKEYELDDTQMTVVASGLMVWVIE FT NGCSPNINGVWTMMDGDEQRKFPLKPVIEYASPTFRQIMHHFSDAAEAYIEYRNSTERY FT MPRYGLQRNLTDYNLARYAFDFYEITSRTPARAREAHMQMKAAAVRGSNTRMFGLDGNV FT GESQENTERHTAGDVSRNMHSLLGVQQHH" FT variation 9 FT /replace="c" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 213 FT /replace="t" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 222 FT /replace="t" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 357 FT /replace="a" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 387 FT /replace="c" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 402 FT /replace="a" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 786 FT /replace="c" FT /note="nucleotide difference between two independent clones FT for this strain" FT mat_peptide 829..1815 FT /product="coat protein" FT variation 884 FT /replace="t" FT /note="nucleotide difference between two independent clones FT for this strain; results in amino acid change from A to V" FT variation 898 FT /replace="g" FT /note="nucleotide difference between two independent clones FT for this strain; results in amino acid change from T to A" FT variation 975 FT /replace="t" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 1148 FT /replace="a" FT /note="nucleotide difference between two independent clones FT for this strain; results in amino acid change from R to K" FT 3'UTR 1819..2053 FT variation 1963 FT /replace="g" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 1971 FT /replace="t" FT /note="nucleotide difference between two independent clones FT for this strain" XX SQ Sequence 2053 BP; 675 A; 389 C; 498 G; 491 T; 0 other; tgtgatgcag atggttcaca attcgatagt tcactaacac cttatctcat caatgcagtg 60 ttggacatca gattgcattt tatggaagat tggagtatcg gagagaaaat gctcaggaac 120 ctttatacag aaattgttta tactcctata gcaacaccag atggatccgt cataaagaaa 180 ttcaaaggaa ataatagcgg acaaccatca accgttgttg acaacacact aatggtgatc 240 atagcgttta actatacaat gttgtcatgt gggatcgaag cggatatgat agatgaaata 300 tgcaaaatgt atgcaaatgg ggacgatctt ttgttagcaa tacggccaga ttacgagcat 360 ttattggata atttctcaaa acactttgct gatctaggtc ttaacttcga ttttacatca 420 cgcacaagag ataggacgga attgtggttt atgtcgacac gaggcattaa aattgacaat 480 atgtatatcc caaaattgga acaggaaaga atcgttgcta ttttagaatg ggacagatca 540 ttattaccac aatatagact ggaggcgata tgtgctgcaa tggtggaatc atggggatat 600 ccacaattat tacatgagat taggaaattt tatgcttgga ttctcgaaat gcagccattc 660 gccactctag cgaaagaagg acttgccccg tacatagcag aaacggctct gcgtaatctt 720 tatacagggg aaggaataaa agaaggggag ttggatgttt attacacaca attcctcaaa 780 gatttgcctg aatacataga ggatgaacta attgacgtgc gccatcaggc aggaggcggt 840 acagttgatg caggagcaac cacagcagaa gcaacagcac aagcacagcg tgatgcaaca 900 gcgaaagctc aacgagacgc tgacgcgaag aagaaggcgg atgatgaagc ggcagagagg 960 cagagacaag atgccgcggc aaagaagaaa gctgatgatg atgcaaaagc taaagctgat 1020 gcggatgcta aagcaaaatc agatgctgat gcgaaaaaga aagcagacga cgaagcagca 1080 agaaaagcac aaaatcaaaa agacaaggat gtggacgtcg gcacatctgg cacggtggca 1140 gtgcctaggc tcaaagcaat gtccaagaaa atgaaattac cacaagcaaa agggaaaaac 1200 attttacact tggattttct tttgggatac aagccacaac agcaagacat ttcaaacacc 1260 agagccacac gggatgagtt cgataggtgg tatgatgcat tgcagaagga atatgaacta 1320 gatgatacgc agatgacagt ggtcgcaagc ggactcatgg tttgggtcat agagaacgga 1380 tgctcaccta atattaatgg tgtttggaca atgatggatg gagatgagca aaggaaattt 1440 ccactcaagc ccgttattga atatgcatct ccaacattca gacagataat gcaccacttt 1500 agtgatgcag ctgaagcgta catagagtat cggaactcga cagagcgtta tatgccaaga 1560 tacggacttc agcgaaactt aaccgactat aacctagccc ggtacgcatt cgatttctat 1620 gaaataactt cgcgtacacc ggcgagagct agagaggccc acatgcagat gaaagcagca 1680 gcagtgcgtg gatcaaacac gcgcatgttt ggcttggatg ggaatgtcgg tgagagtcag 1740 gagaatacag aacgtcacac agctggcgat gtgagtcgca atatgcactc ccttcttgga 1800 gtgcagcagc atcactgatg tactgagatc ttcattgcag ttttaagagt attttatata 1860 tttactattt cagtgagggt ctccctcctt agtattatat atgtacttta gaaatagtag 1920 tcattctgca ggggagtgag gttcacctcc aaccctatgg ttactatttc ctactagcgt 1980 cgaactacat tacggacacc ctgttgtgtg gttctaccac gagtcaggag ttgcgagtat 2040 tgtagcaaga gac 2053 //