ID U57357; SV 1; linear; mRNA; STD; VRL; 2001 BP. XX AC U57357; XX DT 06-FEB-1997 (Rel. 50, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 4) XX DE Sugarcane mosaic virus strain E polyprotein mRNA, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2001 RA Mirkov T.E., Yang Z.N.; RT "Sequence and relationships of Sugarcane Mosaic and Sorghum Mosaic Virus RT strains, and development of RT-PCR based RFLPs for strain discrimination"; RL Phytopathology 87:932-939(1997). XX RN [2] RP 1-2001 RA Mirkov T.E.; RT ; RL Submitted (02-MAY-1996) to the INSDC. RL T. Erik Mirkov, Plant Pathology, Texas A&M, 2415 E. Hwy 83, Weslaco, TX RL 78596, USA XX DR MD5; 2d3b2190285158efa8087ced5e5bc194. XX FH Key Location/Qualifiers FH FT source 1..2001 FT /organism="Sugarcane mosaic virus" FT /strain="E" FT /mol_type="mRNA" FT /db_xref="taxon:12224" FT mat_peptide <1..828 FT /product="nuclear inclusion II protein" FT CDS <1..1770 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:P89207" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:P89207" FT /protein_id="AAB70861.1" FT /translation="CDADGSQFDSSLTPYLLNAVLHIRLQFMEEWELGAQMLRNLYTEI FT VYTPIATPDGSIIKKFKGNNSGQPSTVVDNTLMVILAFNYAMLSSGIQDNEIDNCCRMF FT ANGDDLLLAVHPDYEHILDGFQTHFGNLGLNFEFNSRTREKSNLWFMSTQGLKYEGIYI FT PKLEKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYSDLIHEIRKFYAWLLEMQPFAN FT LAKEGLAPYIAETALRNLYLGSGIKEEEIEKYFKQFAKDLPGYLEDYNEEVFHQAGTVD FT AGAQGGGGNAGTQPPATGAAAQGGAQPPTTGAAAQPPATQGSQPPTGGATGGGGAQTGA FT GGNSSITGGQKDKDVDAGTTGKITVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQ FT DISNTRATREEFDRWYEAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGNWTMMDG FT DEQRAFPLKPIIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLA FT RYAFDFYEITSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVS FT RNMHSLLGVQQHH" FT variation 3 FT /replace="c" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 6 FT /replace="c" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 331 FT /replace="c" FT /note="nucleotide difference between two independent clones FT for this strain" FT mat_peptide 829..1767 FT /product="coat protein" FT variation 951 FT /replace="a" FT /note="nucleotide difference between two independent clones FT for this strain; results in amino acid change from I to V" FT variation 1036 FT /replace="g" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 1044 FT /replace="a" FT /note="nucleotide difference between two independent clones FT for this strain" FT 3'UTR 1771..2001 FT variation 1958 FT /replace="g" FT /note="nucleotide difference between two independent clones FT for this strain" XX SQ Sequence 2001 BP; 643 A; 416 C; 476 G; 466 T; 0 other; tgtgatgcgg atggctcaca atttgatagc tccctaacac catatctctt aaatgccgtg 60 ctacacattc gattacaatt tatggaggag tgggaactag gcgcacaaat gttacgaaat 120 ctgtacactg agatcgtcta cacaccaatt gcaacacctg atggttccat aattaagaaa 180 tttaaaggaa acaacagtgg tcaaccatca actgtagtcg acaacacgct aatggttatc 240 ttagcattca attatgcaat gttatcaagt ggaatacaag acaatgaaat cgacaactgt 300 tgcagaatgt tcgccaatgg agacgattta ttgttggcag tacatcccga ttatgaacat 360 atactggatg gatttcagac ccattttgga aaccttggtt taaattttga attcaattca 420 cgaacgaggg aaaaatcgaa cttgtggttc atgtcaacac agggactcaa gtatgaaggc 480 atttatatac caaaactcga aaaggaaaga atagtcgcca tactcgagtg ggatcgttca 540 aatctacccg agcaccgttt agaagccatt tgtgcagcaa tggtcgaagc gtggggctat 600 tcagatctca tacatgaaat tcggaaattt tatgcatggc ttctggaaat gcaaccattt 660 gcaaatttag ccaaagaggg tctagctcca tatattgcag aaacagcgct tcgtaactta 720 tatctaggtt cagggattaa ggaagaggaa attgaaaaat acttcaagca gtttgcaaag 780 gacctccctg ggtatttaga ggattacaac gaagaagttt ttcaccaagc tggaacagtc 840 gatgcaggcg ctcaaggagg aggtggaaac gccggaactc agccgccagc cactggagca 900 gcagctcaag gaggagctca accaccaaca actggagcag ctgcacaacc gcccgcgact 960 caaggttcac aaccgcccac agggggagct actggtggag gtggtgcaca aacaggagct 1020 ggtggaaata gctcaattac agggggtcag aaagacaagg atgtagatgc tggtacgaca 1080 ggcaaaatca cagtgccaaa acttaaagcc atgtcgaaga agatgcgctt gccaaaagca 1140 aaaggaaagg acgttttgca tctggacttt ctgttaacat acaaaccgca acaacaagac 1200 atatcaaaca caagagcaac cagagaggag tttgataggt ggtatgaagc cataaagaag 1260 gaatatgaaa tagatgacac acaaatgaca gttgtcatga gtggtctaat ggtatggtgt 1320 attgagaatg gttgctcacc aaacataaac ggaaattgga caatgatgga tggagatgaa 1380 caaagagctt tcccattaaa accaatcatt gaaaacgcat ctccaacatt ccggcaaata 1440 atgcatcatt tcagtgatgc agctgaagca tatatcgagt atagaaactc tacagagcga 1500 tatatgccac gatatggact tcagcgaaat ctcaccgact atagcttagc gcggtatgca 1560 tttgactttt acgaaataac ctcaaggaca ccagctagag ctaaggaagc ccacatgcag 1620 atgaaggccg cagcagtccg tggttcaaac acacgattgt tcggtctgga cggaaatgtc 1680 ggcgagaccc aggagaatac agagagacac acagctggcg atgtcagtcg caacatgcac 1740 tctctgttgg gagtgcagca gcaccactag tctcctggaa accctgtttg cagtacctat 1800 agtatgtact aatgatgtat atcagtgagg ttctacctcg tctttactat attatgtatg 1860 tacttaaagc gtgaaccagt ctgcaggaca cagggttgga cccagtgtct tctggtgtaa 1920 cgtgtactag cgtcgagcca cgtgacggac agcactgagt gtggctttgc cattagtgct 1980 gcgagtctct tggtgagaga c 2001 //