ID U57354; SV 1; linear; mRNA; STD; VRL; 1977 BP. XX AC U57354; XX DT 06-FEB-1997 (Rel. 50, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 4) XX DE Sugarcane mosaic virus strain A polyprotein mRNA, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-1977 RA Mirkov T.E., Yang Z.N.; RT "Sequence and relationships of Sugarcane Mosaic and Sorghum Mosaic Virus RT strains, and development of RT-PCR based RFLPs for strain discrimination"; RL Phytopathology 87:932-939(1997). XX RN [2] RP 1-1977 RA Mirkov T.E.; RT ; RL Submitted (02-MAY-1996) to the INSDC. RL T. Erik Mirkov, Plant Pathology, Texas A&M, 2415 E. Hwy 83, Weslaco, TX RL 78596, USA XX DR MD5; bd13f70f2ac5d45c883a477f0af95bf9. XX FH Key Location/Qualifiers FH FT source 1..1977 FT /organism="Sugarcane mosaic virus" FT /strain="A" FT /mol_type="mRNA" FT /db_xref="taxon:12224" FT mat_peptide <1..828 FT /product="nuclear inclusion II protein" FT CDS <1..1746 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:P89204" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:P89204" FT /protein_id="AAB70870.1" FT /translation="CDADGSQFDSSLTPYLINAVLHIRLQFMEEWELGAQMLRNLYTEI FT VYTPIATPDGSVIKKFKGNNSGQPSTVVDNTLMVILAFNYAMLSSGIQDDEIDNCCKMF FT ANGDDLLLAVHPDYEHILDGFQTHFGNLGLNFEFNSRTKEKSDLWFMSTQGLKCEGIYI FT PKLEKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFAN FT LAKEGLAPYIAETALRNLYLGSGIKEEGIEKYFKQFAKDLPGYLEDYNEEVFHQAGTVD FT AGAQGGGGNVGTQPPATGAAAQGGAQPPATGAAAQPPATQGSQPPTGGATGGGGAQVTG FT GQRDKDVDAGTTGKITVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRAT FT REEFDRWYEAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGSWTMMDGDEQRVFPL FT KPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYE FT MNSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLG FT VQQHH" FT variation 15 FT /replace="c" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 749..750 FT /replace="aa" FT /note="nucleotide difference between two independent clones FT for this strain; results in amino acid change from G to E" FT mat_peptide 829..1743 FT /product="coat protein" FT variation 987 FT /replace="a" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 1092 FT /replace="g" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 1203 FT /replace="g" FT /note="nucleotide difference between two independent clones FT for this strain" FT variation 1665 FT /replace="t" FT /note="nucleotide difference between two independent clones FT for this strain" FT 3'UTR 1747..1977 XX SQ Sequence 1977 BP; 621 A; 423 C; 485 G; 448 T; 0 other; tgcgatgcgg atggttcaca atttgacagc tccctaacac catatctcat aaatgccgtg 60 ctacacattc gactacaatt tatggaggag tgggaactgg gcgcacaaat gttacgaaat 120 ctgtacactg agatcgtcta cacaccaatt gcaacaccag acggttccgt aatcaagaaa 180 tttaaaggaa acaacagtgg tcaaccatca actgtagtcg acaacacgct aatggtcatc 240 ttagcattca attatgcaat gttgtcaagt ggaatacaag atgatgaaat cgacaactgt 300 tgcaaaatgt ttgctaatgg agatgatcta ctgttggcag tacatcccga ttacgaacat 360 atactggatg gctttcaaac ccactttgga aaccttggtt tgaattttga attcaattca 420 cggacgaagg aaaaatcgga cttgtggttc atgtcaacac agggactcaa gtgtgagggc 480 atttacatac caaaactcga aaaggaaaga atagtcgcca tactcgagtg ggatcgttca 540 aatctacccg agcaccgtct agaagccatt tgtgcagcaa tggttgaagc gtggggatat 600 ccagacctca tacatgaaat tcggaagttc tacgcatggc tgctggagat gcaaccattt 660 gcgaatctag ctaaagaggg tctggctcca tatattgcag aaacagcgct tcgtaacttg 720 tatctaggtt cagggatcaa ggaagagggt atcgaaaaat acttcaagca gtttgcaaaa 780 gacctccctg ggtacttaga ggactacaac gaagaagttt ttcaccaagc tggaacagtc 840 gatgcaggcg ctcaaggagg aggtggaaac gtcggaactc agccgccagc cactggagca 900 gcagctcaag gaggagctca accaccagca actggagcgg ctgcgcaacc acctgcgact 960 caaggttcac aaccacccac agggggggct actggtggag gtggtgcaca agttacagga 1020 ggccaaagag acaaggatgt agatgctggt acgacaggta aaatcacagt gccaaaactt 1080 aaagccatgt caaagaagat gcgcttgcca aaggcaaaag gaaaggatgt tttgcatctg 1140 gactttctgt taacatacaa accgcaacaa caagacatat caaacacaag agcaaccaga 1200 gaagagtttg ataggtggta tgaagccata aagaaggaat atgaaataga tgacacacaa 1260 atgacagtcg tcatgagtgg tctaatggta tggtgtattg agaatggttg ctcaccaaac 1320 ataaacggaa gttggacaat gatggatgga gatgaacaaa gagtcttccc attaaaacca 1380 gttattgaaa acgcatctcc aacattccgg caaataatgc atcattttag tgatgcagct 1440 gaagcatata tcgagtatag aaactctaca gagcgataca tgccacgata cggacttcag 1500 cgaaatctca ccgactatag cttagcgcgg tatgcatttg acttttacga aatgaattca 1560 aggacaccag ctagagctaa agaagcccac atgcagatga aggccgcagc agtccgtggt 1620 tcaaacacac gattgttcgg tctggacgga aatgtcggcg agacccagga gaatacagag 1680 agacacacag ctggcgatgt cagtcgcaac atgcactctc tgttgggagt gcagcagcac 1740 cactagtctc ctggaaaccc tgtttgcagt acctatagta tgtactaata atgtatatca 1800 gtgaggttct acctcgtctt tactatatta cgtatgtact taaagcgtga accagtctgc 1860 aggacacagg gttggaccca gtgtcttctg gtgtagcgtg tactagcgtc gagccacgtg 1920 acggacagca ctgggtgtgg ctttgccatt ggtgctgcga gtctcttggt gagagac 1977 //