ID U57305; SV 1; linear; genomic RNA; STD; VRL; 4201 BP. XX AC U57305; XX DT 12-JUN-1996 (Rel. 48, Created) DT 26-NOV-2008 (Rel. 97, Last updated, Version 8) XX DE Carrot mottle mimic umbravirus (CMoMV) dsRNA1, complete genome. XX KW . XX OS Carrot mottle mimic virus OC Viruses; Riboviria; Tombusviridae; Calvusvirinae; Umbravirus. XX RN [1] RC http://www.bspp.org.uk/mppol/1996/1111gibbs RP 1-4201 RA Gibbs M.J., Ziegler A., Robinson D.J., Waterhouse P.M., Cooper J.I.; RT "Carrot mottle mimic virus (CMoMV): A second umbravirus associated with RT carrot motley dwarf disease recognised by nucleic acid hybridisation"; RL Mol. Plant Pathol. 0:0(1996). XX RN [2] RP 1-4201 RX DOI; 10.1006/viro.1996.0533. RX PUBMED; 8862426. RA Gibbs M.J., Cooper J.I., Waterhouse P.M.; RT "The genome organization and affinities of an Australian isolate of carrot RT mottle umbravirus"; RL Virology 224(1):310-313(1996). XX RN [3] RP 1-4201 RA Gibbs M.J.; RT ; RL Submitted (30-APR-1996) to the INSDC. RL Mark J. Gibbs, Division of Plant Industry, Commonwealth Scientific Research RL and Industrial Organisation, Black Mountain Laboratories, Canberra, ACT GPO RL Box 1600, Australia XX DR MD5; 7e962e4843af44c1deb1898ffc100965. XX FH Key Location/Qualifiers FH FT source 1..4201 FT /organism="Carrot mottle mimic virus" FT /isolate="Australian" FT /mol_type="genomic RNA" FT /note="cDNA was synthesised to viral dsRNA (replicative FT form). All 4201 nucleotide residues were determined from FT cDNA sequenced in both orientations and except for the 5' FT terminal 126 nucleotides and the 3' terminal 101 FT nucleotides, the sequence was determined from two or more FT independently generated clones. At sixteen positions the FT identity of a nucleotide differed when read from different FT clones spanning the same region." FT /db_xref="taxon:47736" FT CDS 9..1037 FT /codon_start=1 FT /product="unknown" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:Q66126" FT /protein_id="AAB81638.1" FT /translation="MDHITKFLRMDFSPKDGVLTRRQCAERFDDTWGLLITQARMTTAH FT TADMCAWYEGSRETNQYLPLEQFVDSRDASKEAEDKVDKLSSPPTRGCGGTTVNADGGL FT VENPLPTNRDEMPASSMQMNAPSGGIAVASVNSEVARWVFALPRELDEPIMETPVDPSA FT PTEAERELARVLNNTVAVGDTASALSTIQEEPQHEVIAVPGTAVGVVHQEDPAPVEGSP FT STRDAAMEGDAGHSAHAGDDTDASVEMPTTVEAAGPLMEEGPSMAHLTSYTVAMELRSR FT FGLRPASPANIELGARVAREILKTAGARRQDNYYLAQQAVKFFLTPTLLDVVYSTPIRD FT FY" FT variation 654 FT /replace="a" FT variation 878 FT /replace="a" FT variation 883 FT /replace="c" FT variation 915 FT /replace="t" FT CDS <947..2656 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2" FT /db_xref="GOA:Q66127" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q66127" FT /protein_id="AAB81639.1" FT /translation="LLSGPAGSQVFPDADTPGCGVQHTHPGFLLGDVIARDGVCTKTVP FT IILSPSLHIRPSARPRPVKRVSYQIDAVRPSADFGVHNNSLVNLVRGINERVFYTDNRG FT SLPVRPTPGRFDRLTVDIKHFKINAWSMEDVVNSYTGRQRARYEQAMLSIMERPLERRD FT ARVSTFIKAEKINFSAKPDPAPRVIQPRDPRFNVVFAKYIKPLEPMLYKALGRLYEQPC FT VAKGFNAFQTGEIIRKKWDSFRNPVCVGLDASRFDQHVSVEALKFTHSVYKRFNSSKEF FT VDLLNQMYVNRGLGTCKDGLVKYKVKGCRMSGDMDTALGNCVLMVLMTRNLCLDLSIPH FT ELMDNGDDCIVIFEKEHLQRFNAAVKPYFAALGFTMKVEAPVYQFEKVEFCQTQPVFDG FT TQWRMVRQIPSIAKDLCSVIDWEQLESWWHAIGNCGQSLAGGLPVFGSFYRWLCRIGKA FT NTKVTEHPLYKCGMVNLSRGMDARDKPITTEGRLSFSLAFGLSIPMQIALEGIYDNLKR FT PGRVVPGACERRGFNDWFIPDVQCLNPSRSAVHTDEVEVEVDFLYPPPVSAC" FT regulatory 992..1132 FT /note="region with RNA structural features probably FT required from -1 ribosomal frameshifting" FT /regulatory_class="other" FT regulatory 1025..1031 FT /note="slippery heptanucleotide for -1 ribosomal FT frameshifting from ORF1 to ORF2" FT /regulatory_class="other" FT variation 1327 FT /replace="c" FT variation 1993 FT /replace="t" FT variation 2221 FT /replace="g" FT variation 2314 FT /replace="a" FT variation 2317 FT /replace="g" FT variation 2723 FT /replace="g" FT variation 2770 FT /replace="c" FT variation 2773 FT /replace="t" FT CDS 2790..3575 FT /codon_start=1 FT /product="unknown" FT /note="ORF3" FT /db_xref="InterPro:IPR006902" FT /db_xref="UniProtKB/TrEMBL:Q66128" FT /protein_id="AAB81640.1" FT /translation="MNLQIQPIGDGNNSSRNSRRPNQPSPRRRDPRQASGSWLWCPNTS FT PRQQYPYMYATIPPRAPTNGPGFLYPEMAHEAQWGSPVYREASSGIPATRARRNRGRGS FT VVAPRYGPVGPGTGRPQSVTEPQRGTAAGRFLSELLYSFERFGRECPAMFLPSDPASRH FT PPEDWLQRLLPALNVEPSHRREGPTLPSNRAGVCAHSKALDKELVADTGTTAAVSERRA FT DEPTRKEPEGQPITEAPSTGLCSKPHTRGEQCSDPTLHF" FT CDS 2818..3606 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q66129" FT /protein_id="AAB81641.1" FT /translation="MAIIQAGTREDLINLLHGAGIQDKLRDLGFGVLTPARGSNTLTCT FT PLYPPEHQRTVRDFFTRKWRTKRSGGLLFIEKLVVAFLPHVPDGTAGEVVLWLHDTALS FT DLEPVGRKVSLSLSGGPRLVAFYPNYSIPLSDSAESAPRCFSLVTQLQGIRLKTGSSAF FT SLLSMWNPVIGEKAQHYQATEPECVPIVRHSIRSSLQTLALQRQYLNAALTNPLGRSQR FT GSQSLRHPPLDYALSPTREASSVQIPPSTSSATKAHQYLE" FT variation 3681 FT /replace="t" FT variation 3740 FT /replace="t" FT variation 3757 FT /replace="g" FT variation 3965 FT /replace="a" FT regulatory 4169..4201 FT /note="region with RNA structural features probably FT required for genomic replication" FT /regulatory_class="other" XX SQ Sequence 4201 BP; 1050 A; 1073 C; 1135 G; 943 T; 0 other; gcaacgttat ggatcacata actaagttct tgcgaatgga cttctcgccc aaagatggcg 60 tcctaaccag acgccaatgt gctgaacgct tcgatgacac ctggggactc ttaattaccc 120 aggcgagaat gaccacagcg cacacagcgg atatgtgtgc atggtacgag gggtcccggg 180 agaccaacca gtacctcccc ctagagcagt tcgtggactc cagggatgcc agcaaggaag 240 ctgaagacaa ggtggacaaa ttgtcctccc cccctacccg aggctgtggt ggtaccacgg 300 taaatgctga tgggggcctt gtggagaacc ctctcccaac taatagggat gagatgcctg 360 catctagcat gcagatgaat gccccatcgg gtggcattgc cgtggcctct gttaatagtg 420 aggtcgcgcg ttgggtattt gctctacccc gtgaactgga tgaacctatt atggagactc 480 cagtagaccc gtctgctcct acagaggcag aacgtgagtt ggcgcgggta ttgaacaata 540 ccgttgctgt cggggacact gcatcggcac tgtccaccat ccaggaagag ccacaacacg 600 aggtaattgc tgtgcctggg acagccgtag gagtggtcca ccaagaggac ccagccccag 660 tagagggctc ccctagtaca agggatgccg ccatggaagg cgatgcgggc cactcagccc 720 atgccggtga tgacaccgat gcctcagtgg agatgcccac gacagtggaa gcagcagggc 780 ccctaatgga agaggggcca tccatggctc acttaacgag ctatacagta gccatggaac 840 tcaggtctag attcggcctg cgaccggcca gccccgctaa tatagaatta ggggcgcgag 900 ttgctaggga aatcctgaag accgctgggg ccagacgcca agataactac tatctggccc 960 agcaggcagt caagtttttc ctgacgccga cactcctgga tgtggtgtac agcacaccca 1020 tccgggattt ttactagggg acgtcattgc aagggatggg gtgtgtacta aaacagtgcc 1080 tatcatattg agcccctcct tgcacatcag gccgtccgca cgtccccggc ctgttaaaag 1140 ggtatcttac cagattgacg cggtaaggcc ctctgctgat tttggagttc acaacaactc 1200 cttggtgaat ctcgtgaggg gaataaatga gcgagtgttc tacactgata atcgtggctc 1260 tcttcctgtt agacccaccc caggtaggtt tgaccgtctg actgtcgaca taaagcactt 1320 caaaattaat gcttggtcca tggaagacgt cgtcaacagt tataccggga gacaaagggc 1380 aaggtatgag caagcgatgt tgtctatcat ggaacgaccg ctagaacgga gggatgctag 1440 agtgtctaca tttataaaag cggagaagat caacttttct gccaagccgg acccagctcc 1500 ccgagtcatc caacctcgag atcccaggtt caatgtggta ttcgcgaaat acattaaacc 1560 acttgagcca atgttgtata aagctctggg caggttgtat gaacaaccgt gtgtcgccaa 1620 gggatttaat gccttccaaa ctggtgagat aattaggaag aagtgggatt cattccgaaa 1680 tccagtttgt gtagggctag acgctagccg atttgaccag catgtgtcag ttgaagcttt 1740 aaagttcaca cattctgtgt acaagcggtt caattcctct aaggagtttg tggacctgct 1800 caaccagatg tatgttaatc gtggacttgg cacttgcaaa gatggtctcg ttaagtataa 1860 ggtgaagggt tgcagaatga gcggtgatat ggataccgcc ctgggcaatt gtgttctcat 1920 ggtcctaatg acacgaaatt tgtgtttaga cctgtccatc ccccatgagt tgatggacaa 1980 tggtgacgat tgcatcgtca tctttgagaa ggaacatttg caaaggttta atgcagctgt 2040 caagccatac ttcgcagcgt tgggcttcac catgaaagta gaagcccctg tttaccaatt 2100 tgagaaagtc gaattttgcc aaacccagcc agtatttgat ggcacccaat ggagaatggt 2160 taggcaaatt cctagtatcg ctaaagacct atgtagcgta atcgattggg aacagctaga 2220 atcttggtgg cacgcgatag gaaactgcgg ccagagcttg gcgggaggat tgccagtgtt 2280 tggcagtttt taccgttggt tgtgtagaat tgggaaagct aatactaaag tgaccgagca 2340 tccactgtac aaatgcggca tggtcaacct ttcccgtggg atggatgcgc gagataagcc 2400 catcacaact gagggacgcc ttagtttcag cttggcgttt ggattgtcta ttccaatgca 2460 aatagcattg gagggtatat atgacaatct taagagacca ggtagggtag tcccgggggc 2520 ttgtgaaagg cgaggattta atgactggtt cataccagat gttcagtgcc ttaacccatc 2580 cagatctgca gtccacaccg acgaggttga ggtggaggtt gatttcctct accctcctcc 2640 cgtttccgcc tgttgaggca gtcacgtagc tagtaccagg ttgcaatact agagcgttag 2700 tcctggggcg tccctttggt ggagggccgt caaacctaga taactcagtc acccaatcct 2760 ccactaggct ctggaggttg ggcatcgtca tgaacctaca gatacaacca ataggcgatg 2820 gcaataattc aagcaggaac tcgagaagac ctaatcaacc ttctccacgg cgcagggatc 2880 caagacaagc ttcgggatct tggctttggt gtcctaacac cagcccgagg cagcaatacc 2940 cttacatgta cgccactata ccccccagag caccaacgaa cggtccggga tttctttacc 3000 cggaaatggc gcacgaagcg cagtgggggt ctcctgttta tagagaagct agtagtggca 3060 ttcctgccac acgtgcccga cggaaccgcg ggcgaggtag tgttgtggct ccacgatacg 3120 gccctgtcgg acctggaacc ggtaggccgc aaagtgtcac tgagcctcag cgggggaccg 3180 cggctggtcg ctttctatcc gaattactct attcctttga gcgattcggc agagagtgcc 3240 ccgcgatgtt tctccctagt gacccagctt caaggcatcc gcctgaagac tggctccagc 3300 gccttctccc tgctctcaat gtggaaccca gtcataggag agaaggccca acactaccaa 3360 gcaacagagc cggagtgtgt gcccatagta aggcactcga taaggagctc gttgcagaca 3420 ctggcactac agcggcagta tctgaacgcc gcgctgacga acccactagg aaggagccag 3480 aggggcagcc aatcactgag gcaccctcca ctggactatg ctctaagccc cacacgagag 3540 gcgagcagtg ttcagatccc accctccact tctagtgcca ccaaagccca ccaatacctt 3600 gagtaagcat tggtgcgtat ctgtactcac ggcacccggg ttgtagatag tttcccccgc 3660 gtagccagat cccatggatg gcggccatta acttgccctg cccatggtta aatagaagag 3720 tgttactagt tagatgacac cgggactaga ggccaaatcg ccctggaatg ggaaggaggc 3780 gagaccaatg gtacgccgtg gcttcagggg tgtggctggt taccacaccc ggtataactc 3840 tgagtccagt gagtggataa actagtagct agatgcgcct tgagcctcgt tgggattggc 3900 agcatcactc ttgatatgca tggtggagcc aaaactccag gtgaataacc caccagcacc 3960 aaacaaatcc tcccccccct tagtataggt ctcgatctta gagacaaaac cacacagtga 4020 tcagagatac tgtgtgggtg gttgaggagt cacagcccaa gctgtgcatt agccgtgcta 4080 ggctcgaccg caatgtcgta aacttgtccg ccttgagaac tggcagttac tgggatcggg 4140 catataatag gtaccagagc tctccatctg atttagcgct gtcgcggacg gcagcgcgcc 4200 c 4201 //