ID U55002; SV 1; linear; genomic RNA; STD; VRL; 4326 BP. XX AC U55002; XX DT 20-JAN-1997 (Rel. 50, Created) DT 06-JUN-2017 (Rel. 133, Last updated, Version 7) XX DE Panicum mosaic virus (PMV) Kansas strain infectious clone, complete DE sequence. XX KW . XX OS Panicum mosaic virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Panicovirus. XX RN [1] RP 1-4326 RX DOI; .1006/viro.1997.8939. RX PUBMED; 9454725. RA Turina M., Maruoka M., Monis J., Jackson A.O., Scholthof K.B.; RT "Nucleotide sequence and infectivity of a full-length cDNA clone of panicum RT mosaic virus"; RL Virology 241(1):141-155(1998). XX RN [2] RP 1-4326 RA Scholthof K.-B.G., Turina M.; RT ; RL Submitted (12-APR-1996) to the INSDC. RL K.-B. G. Scholthof, Plant Pathology, Texas A&M University, 120 Peterson RL Building, College Station, TX 77843-2132, USA XX DR MD5; 64703b36662a73f634d061aa3b1a1045. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC1421387; 16524473. DR EuropePMC; PMC5072566; 27764211. XX FH Key Location/Qualifiers FH FT source 1..4326 FT /organism="Panicum mosaic virus" FT /strain="Kansas" FT /mol_type="genomic RNA" FT /note="PMV is a member of the provisional group FT 'Panicovirus' within the family Tombusviridae; Virus is FT maintained by mechanical transmission to Pennisetum FT glaucum" FT /db_xref="taxon:40279" FT CDS 29..3007 FT /codon_start=1 FT /transl_except=(pos:1304..1306,aa:OTHER) FT /product="RNA-dependent RNA polymerase" FT /note="112 kDa protein; readthrough of amber stop codon" FT /db_xref="GOA:P89034" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:P89034" FT /protein_id="AAC97551.1" FT /translation="MESLIQHILSATSSLSMPSVDSDKLQLLLTRFPQATLSWLSGIDG FT LSVHQFKVVATHVIKESYSHLSPSVAVLLAKPSDYYKLVVHGLTQKQWNEFDDKVTDAP FT RTAISWLYNQILVVGQPWMKSLNEGLKEYLPGWLHTCLRMLANLWFGAERVLHGISHAV FT SDITTYQPWMSCRRCVAHSPKESLLGEATTTSNPRESSWFSWLLCGGVVAATVYGFYKW FT VTITETIDRQDLAKQRPTHMQKCYEEVKARLEEESKGFIHDRMEDELTKIVLEPAEIDN FT DGKVLKSEVAQYLVKNHGRFVRSLVTMAKNEFAGVPKPTEANQLAVWRYLYRVCDKKGV FT NPSDTQKSISAALPFVFLPSAYDQDQAITMNCDDTKKVLERYADTFRHTTPLQKLVTNP FT LVGANWTAWARSIFISDPETGLRFAKXGCIEKWQGVQCKRTRVRHPRLRCHFKDRDPKV FT RSIYRIAGLGDQYEFGLHNNSAANLERGLAERVYMVKNYKTDFVASLDPAFCPAPEPVR FT GIFKRLDKYKKEIVRRVGRKSPITDEMFLSYYDGPQLTTYSKAVISLSERPVAVQDSYL FT KTFIKAEKLNLTLKTDPCPRVIQPRHPRYNVELGKYLKHIEHPIYKAIDRIWGGKTIFK FT GMNVEAMGAEIHKKMCKYSNPCAIGFDASRFDQHVSVEALRFEHSIYKSIHGYPELLSL FT LLKWQIHNQGTAHTNDGFFKYLVDGKRMSGDMNTSLGNCILASLIVKDLVDSLGVDAQL FT VNNGDDNVLICSVDDEEVVVKALYDHWMKYGFEVVAEQPVYITEQIEFCQMKPVFDGTQ FT YVLVRNPTVTMSKDACSITPFYTANSARKWCRAVGEAGLSLTGGMPIKQAYYQCMIRNG FT INKGNIHKSKEFRYGLSYVLHHGKSDRKARPISAATRYSFYLAFGYTPDEQTALEGYYD FT SLELEWTESRLGIPARTPECLLLRLLPKIPLQPKSPTKPVQRTASKPDLPDSQWQQALA FT APL" FT CDS 29..1306 FT /codon_start=1 FT /product="replicase-associated protein" FT /note="48 kDa protein" FT /db_xref="GOA:P89034" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:P89034" FT /protein_id="AAC97552.1" FT /translation="MESLIQHILSATSSLSMPSVDSDKLQLLLTRFPQATLSWLSGIDG FT LSVHQFKVVATHVIKESYSHLSPSVAVLLAKPSDYYKLVVHGLTQKQWNEFDDKVTDAP FT RTAISWLYNQILVVGQPWMKSLNEGLKEYLPGWLHTCLRMLANLWFGAERVLHGISHAV FT SDITTYQPWMSCRRCVAHSPKESLLGEATTTSNPRESSWFSWLLCGGVVAATVYGFYKW FT VTITETIDRQDLAKQRPTHMQKCYEEVKARLEEESKGFIHDRMEDELTKIVLEPAEIDN FT DGKVLKSEVAQYLVKNHGRFVRSLVTMAKNEFAGVPKPTEANQLAVWRYLYRVCDKKGV FT NPSDTQKSISAALPFVFLPSAYDQDQAITMNCDDTKKVLERYADTFRHTTPLQKLVTNP FT LVGANWTAWARSIFISDPETGLRFAK" FT CDS 2875..3096 FT /codon_start=1 FT /product="movement protein 1" FT /note="8 kDa protein; 8 kDa putative ORF" FT /db_xref="GOA:P90335" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/Swiss-Prot:P90335" FT /protein_id="AAC97553.1" FT /translation="MSTVETPAQDTLATKEPNKTGAKDRQQARSARLSVAAGAGRTALS FT QRDAQEDRFSLGIVQTADKIENTFNFNF" FT CDS <3096..3275 FT /codon_start=1 FT /product="movement protein 2" FT /note="6.6 kDa protein; noncanonical start codon" FT /db_xref="GOA:P89035" FT /db_xref="UniProtKB/Swiss-Prot:P89035" FT /protein_id="AAC97554.2" FT /translation="VATGKCYCPEDPRVGPLLVLCLLLLLILFSRSWNVAPVVVPSYHT FT VYHHEKYQNIEIQK" FT CDS 3272..4000 FT /codon_start=1 FT /product="capsid protein" FT /note="26 kDa protein" FT /db_xref="GOA:P89036" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:4V99" FT /db_xref="UniProtKB/Swiss-Prot:P89036" FT /protein_id="AAC97555.1" FT /translation="MNRNGATPTRGRGKRAIPNPPRRRARGKSVERGSTPLQYVTTLGP FT SRPRMGQGQGWQKLSHEEIILQVNSSTAADTIQTIPIIPRLSVPAGDKPIYSGSAPHLR FT TIGSAFAIHRWRALSFEWIPSCPTTTPGNLVLRFYPNYSTETPKTLTDLMDSESLVLVP FT SLSGKTYRPKIETRGNPPELRNIDATAFSALSDEDKGDYSVGRLVVGSSKQAVVIQLGL FT LRMRYSAEMRGATSISGVSA" FT CDS 3282..3680 FT /codon_start=1 FT /product="accessory movement protein" FT /note="15 kDa protein" FT /db_xref="UniProtKB/Swiss-Prot:P89037" FT /protein_id="AAC97556.1" FT /translation="MELPLPEDVASVLYLTPLAAVREVNLWNGAPPPYSMLQLWARVDH FT AWAKDRVGRSYPTRKSYFKSTRLLPRTLYRQYQSYRDCQCLQETSPFTREVHHTCVQLD FT PLSPSTDGEHSPSSGSPAVLRQHREIWF" XX SQ Sequence 4326 BP; 1216 A; 1113 C; 1051 G; 946 T; 0 other; gggtattggc tgcaacccat acctgaagat ggagtcgctc atacagcaca ttctctctgc 60 tacatcttcg ctttccatgc catcagtgga cagtgacaaa ctgcaactac tacttacacg 120 cttcccacag gctacactct catggctgag tggaatagac ggcctaagcg tgcatcaatt 180 caaggtagtg gctacccacg taatcaagga aagctattcc catctctcac cttccgttgc 240 agtgttgctg gcgaagccca gtgactacta caagctggtg gtccacggac tcacccaaaa 300 gcaatggaac gagtttgacg ataaagtcac agacgctccg cggaccgcta tatcatggtt 360 atacaaccaa attttggtag ttggacagcc atggatgaag agtctgaacg agggattaaa 420 ggaatacctg ccaggttggc ttcacacctg tctaagaatg ctagccaatc tgtggttcgg 480 ggctgaaaga gttctacatg gcatttcaca cgccgtcagt gacatcacta catatcaacc 540 atggatgtca tgtcggagat gtgtcgcaca tagccccaaa gagagcttgc taggcgaggc 600 aaccaccacc tccaaccccc gagagtcttc ttggttttca tggttgttgt gcggaggagt 660 ggtagcggca acggtatatg gattctacaa atgggttacc atcacggaga ccattgaccg 720 ccaggaccta gcaaaacaga ggcccactca tatgcagaag tgctatgaag aagtgaaggc 780 ccgactagag gaggaaagca aagggttcat tcacgaccgg atggaagacg aactcaccaa 840 aatcgtgcta gagccagctg aaattgacaa tgacggcaaa gtgcttaaat ctgaggtggc 900 acaatacctg gttaaaaatc atggccgttt cgtccgctcc ctagtaacaa tggcaaagaa 960 cgaattcgct ggggttccaa aacccacaga ggctaaccag ttggctgtct ggagatacct 1020 ctacagggtg tgtgataaga aaggagttaa cccctcggac acacagaaaa gcatatccgc 1080 tgccttgcca tttgtattcc tgcctagcgc atacgaccag gatcaggcca tcactatgaa 1140 ctgtgatgac accaagaaag tgcttgagcg ctatgcagac acatttcgac acaccacccc 1200 actgcaaaaa ctagtgacca atccattagt tggggccaat tggactgctt gggcaagatc 1260 catttttatc tcggacccgg aaacgggtct gaggtttgcc aagtaggggt gtatcgaaaa 1320 gtggcagggg gtccagtgca agcgcactcg ggtccgacac ccccgtctca gatgccactt 1380 taaagatagg gaccccaagg tacgcagtat ttaccgtatc gctggactgg gcgatcagta 1440 tgagtttggg cttcacaaca acagtgctgc gaaccttgaa aggggcttag ccgaaagggt 1500 gtacatggtc aagaattaca agacagactt tgtagcctca cttgaccctg cgttttgccc 1560 tgccccagaa ccagtcagag gcatattcaa acgcctagac aaatacaaga aggagattgt 1620 gagacgagtc ggtaggaaga gtccaatcac tgacgagatg ttcctttctt actatgatgg 1680 tccccagttg accacttata gcaaggctgt gatttccttg tccgaacgcc ctgtggctgt 1740 ccaagactca tatcttaaaa ccttcatcaa ggcggagaaa ttaaacctca cactcaagac 1800 agacccctgt cctagggtca tacaaccacg tcaccccaga tacaatgtcg agttgggtaa 1860 gtatctcaag cacatagaac acccaatcta taaagccata gacagaatat ggggggggaa 1920 gacaatattt aaaggcatga atgtagaggc tatgggcgcc gaaatccaca agaaaatgtg 1980 caaatactcc aacccttgcg caataggatt tgacgcctcc cgtttcgatc agcacgtatc 2040 tgtagaagcg ctaagatttg agcactccat ctacaaatct attcacggat accctgaact 2100 gcttagtcta ctactcaaat ggcaaatcca caaccagggc actgcacaca ccaatgatgg 2160 atttttcaag tacttagtag acggaaagag gatgtctggt gacatgaaca ccagtctggg 2220 aaactgcatt ttggcatcgc taatagtgaa agacttggtt gacagtctag gcgttgatgc 2280 tcaactcgtc aacaatggag acgacaatgt cctaatctgc tcggtggatg atgaggaagt 2340 ggtagtcaag gcattgtacg accattggat gaagtatggg tttgaggtcg tagcagagca 2400 accagtctat atcacagagc aaatagaatt ctgccaaatg aagccagttt ttgacggaac 2460 ccagtatgtc ctcgtcagaa acccaactgt taccatgagt aaagatgcgt gcagcattac 2520 tcctttttac acagcgaaca gcgctcgcaa atggtgtaga gcagttggag aagcaggatt 2580 aagtctgaca ggtggtatgc ccatcaaaca agcgtattac cagtgcatga ttcgaaacgg 2640 cattaacaag ggtaacatcc acaagtcaaa ggagtttagg tacgggttat cttacgtgct 2700 acaccacggc aaatccgacc ggaaggcccg ccccatttca gcggcgacca gatattcatt 2760 ctaccttgca tttggctaca ctcctgacga gcaaacagcc ttggaaggtt attatgactc 2820 ccttgaattg gagtggaccg aatccaggtt gggtattcct gcaagaacgc ccgaatgtct 2880 actgttgaga ctcctgccca agataccctt gcaaccaaag agcccaacaa aaccggtgca 2940 aaggaccgcc agcaagccag atctgccaga ctctcagtgg cagcaggcgc tggccgcacc 3000 gctttaagcc aacgagacgc acaagaagac aggttcagcc taggaattgt tcaaactgct 3060 gacaagattg aaaatacttt caacttcaat ttctagtggc gaccggcaag tgctattgtc 3120 ccgaggaccc aagagttggg cccctcctag tactctgcct acttctatta ctgatcctgt 3180 tttcacggtc gtggaacgta gctccagtgg tggttccctc ataccacaca gtgtaccatc 3240 acgagaaata ccaaaacatt gagatccaga aatgaatcgc aatggagcta cccctaccag 3300 aggacgtggc aagcgtgcta tacctaaccc ccctcgccgc cgtgcgagag gtaaatctgt 3360 ggaacggggc tccacccccc tacagtatgt tacaactctg ggcccgagta gaccacgcat 3420 gggccaagga cagggttggc agaagttatc ccacgaggaa atcatacttc aagtcaactc 3480 gtctactgcc gcggacacta tacagacaat accaatcata ccgcgattgt cagtgcctgc 3540 aggagacaag cccatttact cgggaagtgc accacacctg cgtacaattg gatccgcttt 3600 cgccatccac agatggcgag cactctcctt cgagtggatc cccagctgtc ctacgacaac 3660 accgggaaat ctggttttga ggttctatcc gaactacagc acggaaacac ctaagaccct 3720 cacagacctg atggacagcg aatccctcgt gttagtccct tccctctccg ggaaaactta 3780 ccgccctaag atcgaaacac gaggaaaccc accggaattg cgcaacatag atgccaccgc 3840 tttctccgct ctcagcgacg aagataaggg tgactactcg gtgggaaggc tggttgttgg 3900 ctccagcaaa caagctgtcg tgatacagct cggactcctc cgcatgagat actcagctga 3960 aatgcgggga gcaacctcca tcagtggggt tagcgcataa acctgcccaa ggttatcaca 4020 ggctaggacc ggcctgataa aggtccgact tgatgtgcag cttcttaggt gcatctcgta 4080 tagaagcgct ctggacatga cacctttgag acagaccgta cagcagtcac acgggacgcc 4140 acaccacctt tgcagaggtg cccttgggaa accaatggtg tggggtgaca ctgattagtc 4200 gttaacggtg tactaatcca gagtagttca gtgcagggga aacccgggcc gtaagcacgt 4260 ggaactatat aacttaatct cgctgagaag attggggggg attcatgaaa tcccctcacc 4320 aggccc 4326 //