ID U53224; SV 1; linear; genomic RNA; STD; VRL; 3337 BP. XX AC U53224; XX DT 04-MAY-1996 (Rel. 47, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 3) XX DE Maize stripe virus genomic RNA2, complete sequence. XX KW . XX OS Tenuivirus zeae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-3337 RX DOI; 10.1007/BF00284644. RX PUBMED; 8883361. RA Estabrook E.M., Suyenaga K., Tsai J.H., Falk B.W.; RT "Maize stripe tenuivirus RNA2 transcripts in plant and insect hosts and RT analysis of pvc2, a protein similar to the Phlebovirus virion membrane RT glycoproteins"; RL Virus Genes 12(3):239-247(1996). XX RN [2] RP 1-3337 RA Estabrook E.M., Suyenaga K., Tsai J.H., Falk B.W.; RT ; RL Submitted (01-APR-1996) to the INSDC. RL E.M. Estabrook, Plant Pathology, UCD, Davis, CA 95616, USA XX DR MD5; f56cb222dc6d8965ce89af75ede31e94. DR EuropePMC; PMC6456217; 30921434. XX FH Key Location/Qualifiers FH FT source 1..3337 FT /organism="Tenuivirus zeae" FT /chromosome="RNA2" FT /mol_type="genomic RNA" FT /note="RNA2 is an ambisense RNA with two ORFs in opposite FT orientations" FT /db_xref="taxon:3052767" FT CDS 82..687 FT /codon_start=1 FT /gene="pv2" FT /product="pv2" FT /note="23.5 kDa protein" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:Q83468" FT /protein_id="AAB50194.1" FT /translation="MAYLMWNKEYYQFLLNNNRHAGSYENIFKMTCSKEDHYMNSHDAI FT WLLTFCSDFTNPALRTYASQIATESNVFLVRDMQMLSESKVKCWLCDKPVYQETQNLKV FT ISLPNLLNGFQFATESYHICMKNHCGDDPTKFLTEMVFPPHLRAYYKPNQKMEHKYIVI FT TNGIPLSKNFNTVTLQTHVEDTEDYVIVGSVECPIKTK" FT repeat_region 729..774 FT CDS complement(809..3307) FT /codon_start=1 FT /gene="pvc2" FT /product="pvc2" FT /note="93.9 kDa glycoprotein" FT /db_xref="GOA:Q83469" FT /db_xref="InterPro:IPR009547" FT /db_xref="UniProtKB/TrEMBL:Q83469" FT /protein_id="AAB50195.1" FT /translation="MRFNIFFIYATLCSLSLSSVIGKVVEDTWMRDRYEPIKSVVKVSC FT YATAPPCRGNYKLTGFYIEEGEICHNQASINLSETCYSGKYNKELVPHYQFSLFGGIRY FT KRCKDEPLYDISIIGFKQVKNKAFTLQINTINAELVTYARLKDGFYGLVYVVNTTYCPS FT EVESESIIHKQVGLTIKPLCTDGVLVYKNSECKVVVKEQEFTMPSCGKIVLPTYDDKIN FT VCDSTGCQSVSCTASDVCVVYDKMDSIMKIKNYHCSDTYIKSVYIIIVLVVLIICIGTI FT TIINILCFLRPAFWLCKKILFTITGLCHYQPAIQEVEVDLSTIRVIQDEDDHLIAIEDS FT IAPNTNLPSRSMTKARKMENGLLYIPMILFFYIAPMTESACQDLVSSLSNIEVCQDGQC FT GYNTKVQLSLMNTPQDFCFKTKSDVYKIRFNFLKVKCLSTPEYYTNSYSREIAKSDWKC FT FEGEGCPVDGSYSIWDKSDTLSYDYCVKEFVFFSYCPATHYNWKRIIYKAISTRPCVVR FT TCNSFKFEIQGYVQKNGVILSELSGFTDKYISKIVDISLLSFNTMNMPKTYVECDNKAY FT IRAANDLGSFNKELLGHIQCPTREDALTLTRKCVTKVVTEEDQPMIRYEEKDGLNMLEY FT VGSKPLIGVAVTPDGLSLDTNDVLPVTLSLKIKEPITSLITSTIKLNSTTCKITGVERK FT FKKTKVRVDLHSKSSISDILSCSGLALCSLTINNEQYGECITTSYHSTDQGSSIRCLLM FT YSGIPIQCTYNVSPLEITVVAPSLDFNSMEAVKESTTNWMNLIASIIRDNPKLTLMASI FT LPIGMIIKTIKGFLTDMRQD" FT misc_feature complement(830..886) FT /gene="pvc2" FT /note="encodes potential transmembrane segment" FT misc_feature complement(1016..1018) FT /gene="pvc2" FT /note="encodes potential glycosylation site" FT misc_feature complement(1256..1258) FT /gene="pvc2" FT /note="encodes potential glycosylation site" FT misc_feature complement(2165..2167) FT /gene="pvc2" FT /note="encodes putative cleavage site" FT misc_feature complement(2168..2242) FT /gene="pvc2" FT /note="encodes potential transmembrane segment" FT misc_feature complement(2438..2518) FT /gene="pvc2" FT /note="encodes potential transmembrane segment" FT misc_feature complement(2837..2839) FT /gene="pvc2" FT /note="encodes potential glycosylation site" FT misc_feature complement(3080..3082) FT /gene="pvc2" FT /note="encodes potential glycosylation site" FT sig_peptide complement(3242..3307) FT /gene="pvc2" FT /note="potential signal peptide" XX SQ Sequence 3337 BP; 1061 A; 650 C; 549 G; 1077 T; 0 other; acacaaagtc ctgggtataa caaatagttt atatcaatta atctaatctc gcacaagcaa 60 agagataaga cgtgctatat catggcctat ttgatgtgga ataaggaata ctatcagttc 120 ctcttgaata acaatagaca tgctggatca tatgagaaca tcttcaaaat gacatgctct 180 aaagaagacc actatatgaa ctctcatgat gcaatctggt tgttgacatt ttgctctgac 240 ttcacaaacc cagctctaag aacctatgct agccagattg ccactgagtc aaatgtcttc 300 ttagtgagag acatgcaaat gctttctgaa tcaaaagtga agtgctggtt gtgtgacaaa 360 cctgtatatc aggagaccca gaatttgaaa gtcatatctt tgcctaactt actgaatggt 420 tttcaatttg caacagaatc ataccatata tgcatgaaaa atcattgtgg agatgatcca 480 acaaaatttc tgaccgagat ggtgtttcct ccccacctga gggcttatta caaaccaaat 540 caaaagatgg agcacaaata tattgttatt accaatggaa ttcccctctc aaagaatttc 600 aacactgtta ctctgcaaac acatgttgaa gatactgagg attatgtgat tgttgggagt 660 gtagaatgcc ctatcaagac aaagtagggc ttacactcct aacggacaac atggactgga 720 ccaacggaaa atggtgctaa gcaccacatc cggatgtgga gcttagctca ttttctatta 780 tctaataact atgatcactg aaccttattt aatcttgtct catatctgtc aaaaatcctt 840 ttattgtctt tattatcata cctattggga gtatggaagc cattagagtc agttttgggt 900 tatctctaat gattgatgca atcaagttca tccaattagt ggtagactcc ttgactgctt 960 ccatagagtt gaaatctagg cttggagcca caactgttat ctccaaagga gacacattgt 1020 atgtgcattg tataggaatt cctgagtaca tcagcaaaca tcttatacta gatccttgat 1080 ctgttgaatg ataggatgta gttatacatt caccatattg ttcattattt atagtcagag 1140 agcacaatgc cagtcctgag caagagagta tatcactaat agaggatttg ctatgcaaat 1200 ccactctaac tttggtcttc ttgaactttc tctcaacacc tgttatcttg caagtggtag 1260 agttcaattt gatagtgcta gttatcaaac tagttatagg ttccttgatt tttaaggata 1320 gagtgactgg aagcacatca tttgtgtcta aagacagacc atccggtgtg actgccactc 1380 caatcagagg ctttgatcct acatattcta gcatattcaa accatccttt tcttcatatc 1440 gaatcatggg ctggtcttct tcagtaacca ctttagtgac acatttcctt gttagagtga 1500 gtgcatcttc tctggttgga cattgtatgt gtcctaaaag ctccttgttg aaagaaccta 1560 gatcatttgc tgcccgtata tatgccttat tatcgcattc cacatacgtc tttggcatat 1620 tcatggtatt aaaacttaat agagaaatat caacaatttt ggatatatac ttgtctgtaa 1680 aaccagataa ctcagacaaa attacaccgt tcttttgcac atagccttga atctcaaact 1740 taaaactatt gcaagttctg acaacacagg gcctagtaga tatagctttg tatattattc 1800 ttttccaatt ataatgtgtt gccggacaat aagaaaagaa aacaaattct ttaacacaat 1860 aatcataact caaagtgtct gatttgtccc atatagagta cgaaccatcc actggacatc 1920 cttctccttc aaaacatttc caatcacttt tggctatctc tctggagtag ctattagtat 1980 agtattcagg tgtagataga cacttgactt tcagaaaatt gaatctaatt ttgtaaacat 2040 cagattttgt cttgaagcag aagtcttgag gtgtattcat caaactcaat tgcacttttg 2100 tattataacc gcattgacca tcttgacaaa cttctatatt agagagacta gacactaaat 2160 cttgacaagc actctctgtc attggtgcta tataaaaaaa caaaatcatg ggaatgtaca 2220 ataacccatt ctccatcttt ctagcctttg tcatagatct agatgggaga ttagtgtttg 2280 gtgcaataga atcttctatt gctattagat gatcatcttc atcctgaatc actcgaattg 2340 tagataagtc aacctcaact tcttgaatag ctggttggta gtgacacaat ccagtgatgg 2400 tgaataaaat ctttttacat aaccaaaaag ctggtctaag gaaacacaaa atattaataa 2460 tggttatagt tcctatgcaa attatgagaa caactaacac tattattata tacactgact 2520 taatataagt atcagaacaa tgatagtttt taatcttcat tatagaatcc attttgtcat 2580 aaacaacaca tacatcacta gccgtacagg aaacactttg acaccctgta gaatcacata 2640 catttatctt atcatcatat gttggcaaca cgatcttacc acatgatggc atggtaaact 2700 cttgctcttt gactaccact ttgcactcac tattcttata caccaaaact ccatctgtac 2760 aaagaggttt aatagtcagt cccacctgtt tatggataat tgattcagac tctacttccg 2820 atggacagta agtggtgttt actacgtaca ctaatccata aaatccatcc ttaagtctag 2880 cataagtaac caattctgcg ttaatagtat ttatttgaag agtaaaagct ttatttttca 2940 cttgcttgaa ccctatgatt gatatatcgt ataaaggttc atctttgcat ctcttgtatc 3000 taatgcctcc aaataaggag aattggtagt gaggaactaa ttctttgtta tacttaccag 3060 aataacacgt ttcagataag ttaattgaag cttgattatg acaaatctct ccttcctcta 3120 tgtagaatcc agtcaattta taattgcctc tacatggtgg tgctgttgca tagcaagata 3180 ctttcacaac tgactttatt ggttcatatc tatctctcat ccaagtgtct tccaccactt 3240 tccctatcac agatgagagt gataaactac acaatgtggc gtagatgaag aaaatgttga 3300 aacgcattgt aataacaata ttacccagac tttgtgt 3337 //