ID U50869; SV 1; linear; genomic RNA; STD; VRL; 7514 BP. XX AC U50869; XX DT 06-APR-1996 (Rel. 47, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 4) XX DE Tobacco Ringspot virus RNA1 polyprotein gene, complete cds. XX KW . XX OS Tobacco ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7514 RX DOI; 10.1006/viro.1996.0216. RX PUBMED; 8623518. RA Zalloua P.A., Buzayan J.M., Bruening G.; RT "Chemical cleavage of 5'-linked protein from tobacco ringspot virus genomic RT RNAs and characterization of the protein-RNA linkage"; RL Virology 219(1):1-8(1996). XX RN [2] RP 1-7514 RA Zalloua P.A., Buzayan J.M., Bruening G.; RT ; RL Submitted (06-MAR-1996) to the INSDC. RL Pierre A. Zalloua, Plant Pathology, UC Davis, 348 Hutchison Hall, Davis, CA RL 95616, USA XX DR MD5; afb9ba03f2dcfebec71738288d41bee8. DR EuropePMC; PMC2861173; 20229114. DR EuropePMC; PMC3314827; 22218961. DR EuropePMC; PMC3903276; 24449751. DR EuropePMC; PMC4729743; 26843704. XX FH Key Location/Qualifiers FH FT source 1..7514 FT /organism="Tobacco ringspot virus" FT /strain="Bud Blight" FT /mol_type="genomic RNA" FT /db_xref="taxon:12282" FT CDS 101..7015 FT /codon_start=1 FT /product="RNA1 polyprotein" FT /db_xref="GOA:Q88893" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/Swiss-Prot:Q88893" FT /protein_id="AAB03785.1" FT /translation="MGFTCPNSDCLYSRSEWSNRALREEGLSFSMRCPGACCGAMLVRK FT QQEPEAVDQRHSPERVRIAPHQNVCAGLPGVGPSKCPKHSQVPLAPKSKSVPARATVSA FT SPLKKQHCDVVVTVGPPADLELVYPALVSKGSANPPKVGKKSFNEALLEKRAAYQVRTA FT VPPPGPIRVVKTAATPVKVEKVRFPKGAVAFNGANFIDAKGYVVLSAGALKILRGVQKL FT RRQQARSARRMAACRRVRLAVFAARLPSLLRKADEATSGGFKYVDLNAPRVVRKAEKRP FT KKKPAKKAVRPASPVEEEINWDDFIIPESERTASPMKEEKPKRSLVPNSLGFGWWRPAS FT GNLWDVVSQCQRACEGTFLEASAEACLVRAGVDDVALSVWARISKSVVQLSAYYDVNTL FT LENYTALSECTMDELQSVAVQLDSEYQELGPPTHFTCGLSNWARGAGKILYNFVAPTVE FT GIAGAGCRIVERAYELSKTVIDEIFSKMKSLFYDCFGNLFGHLNVLLSTIDSFWARAST FT WIMNILEKTHDCLKVLRDSAVWSLLLILVGGLILLSERFLQSIGIISKPGTILGIFLAT FT FLGIFGYTFFRKDDTLVSDLLCAFKIAITNLFRTKPGPPGSPIIVDGDVVIPESAVAMS FT TCSFMGGLDIAIAAIGNVGASILGFKVGALQYAAKIATCLDQLRKGKDVLKEMTCWIIE FT TLGALWNKMTGREATFFDEVSAIVAVDIREWLEESQNLCLAAQTFSIGDKIVLEQCERL FT IADGHKLLRGMGDADRKLSSSFLSTVQRKVSDLEKIHTQSVRAGYFEGRRMEPFWVYIH FT GPSHCGKSLLMEPMSRELLRAGGFSESSIYTKNSCDKYWSRYRRQACVQIDDLSAGKTD FT PSLESQLINLVASKEVPLDMAEVEDKGILFDSAILVTSSNTAHVPTNANVNHAEAYKNR FT MNVVIQCRRKPEYSPMGMELEGTFQPFDPRNPQASIECMLQHRETHAPITGWISAGAAM FT AEAVNQFRLHREKEMILQSNHLSSFRPAHPIYTECATFLSMYARDASFVPPVDLGCKWE FT IPSGYMTIAAVDGRVFGFSQLGVCTEISKQMKFTEEMEQYTLDKFAPDITKTMASQSRF FT KLVGAFLKGMIREEDNVVSLTSLGPKSTATQREFFETLGLAERVYLRAVQKKVNKIRTD FT PAFDVEALHARLLSTIATSYEYVRTYGPKIFPILMGFVCVVFACYGFIMPLLSFASGGS FT AVGGMVAMEQIAAASVVSSGSSPVAHRNRAPPVQPRYARHRLAGASAEDAYAYEEMMVV FT LYVDSTVAPVVNAVRGPGRQFFNSHQALMIPNNSTVVAHFSTRDVVEIHWEHDVVRKGE FT KKDTEIIQYRCPSIPELPSRCKKYFEYDLERDFPGPFTLDASCYRMQSPGKIDIELVSW FT TDHDRELRTRPLVIADPFGEDRYRREIPQYIQYGRPDQLHDCGAICVAKIGGQHRIVGL FT VISTDKHNTGVGLLPSALHMTTCSLSYVPEEWEEAPRGLKKLGWNDRSELPHMPRKTQY FT VAVNEDLAIPFDNPKIPSVLVSDDPRTVGTPVEGKDPVLVAMEKFYEPMTDFTEEEVRP FT GQTEVSLFEQVCDDIVQTWFDAGAEFEDVEDDVVINGDDDFDKLIMDTSEGYPYVLERT FT HGEKGKTRYFEGGPGAYTLKPGTSVYNDYHKLQEEVQVEGGIPEMVCIECPKDELLVER FT KVLQKLGTRNFEILELPKNMLFRKKFLHWALFLSDMRWCLPCQVGIVVQGREWGLLMDR FT LAAKNSVAYNCDYSKFDGLMSCQVLDAIGKMVNKCYSNANPNLKKKGKGELPGSPPQLA FT RYNLLMSIFGRKCLARSQVFEVRGGIRRGALTVLLNSVFNEILIRYVYKTVIPSPEFNR FT FETFVTLVVYGDDNLIAVDPSMQKIFTGEVIKKTLARKKITITDGSDKLSPVLEAKPLA FT QLDFLKRSFLVSDSGQVMPALDRTCIYSSLLYLRSADCDPIPLLHQNVQNALQELYYRQ FT DREEFDNLRTFYLERLPMWRNGQHRLLDWNQCAEHWRARYTGCPSDNPAGVLDMLVDPR FT CKSFMLPAGPANWSMPIADRIFVCGPKFSASGPSYTLCFNRLAAGETGVQIKPVHAATQ FT GAMPTAKFVESFRSIKKRPELELAISAYESGSNLYFKGCAPYNDIWACAISFCSAFGYA FT QKQVLLHMYDNCKRLGASSLRSYFNKSLVGDGCARRCEIHTTPAIAKQVERLLPQVQCK FT HCEYDPEFASKPTTQLRKCTDPGVDGGKAMYIVRGLGRTAAKLVCSDICDGHLMSCNTS FT FDKMVVNLFRRSCFKCL" XX SQ Sequence 7514 BP; 1831 A; 1566 C; 1883 G; 2234 T; 0 other; ttgaaaattc tcgcacaagg ttcccgtcac tttcaaaact ctcttttctt ttataattgc 60 ttaccaaatt tgattttgtt ttgtttcgac ttgtgcaaag atgggcttta cttgcccaaa 120 ctctgattgt ctctactcgc gtagcgagtg gagcaatcgc gccctccgcg aggagggtct 180 ttcttttagc atgcgttgtc ctggcgcatg ctgcggagca atgttggtcc gcaagcaaca 240 ggaacccgaa gctgtggatc agcgccacag ccccgaaaga gtgcggatag cgccgcacca 300 aaatgtttgt gctggcttgc caggagtggg gccttctaag tgccccaaac attcccaggt 360 gcctctggca ccaaaatcca aatctgtgcc tgcaagggcc acagtttctg cttctcctct 420 caagaagcag cactgtgacg ttgtagtcac tgttggccca ccggccgact tggagctggt 480 ttatccagct cttgtttcta aggggtctgc caacccccct aaggttggaa agaagagctt 540 caatgaagct cttcttgaaa agcgtgcagc ctatcaggtt cgcactgccg ttccacctcc 600 tggtccaatc cgggtggtga agaccgctgc caccccggtc aaggtggaga aggtgaggtt 660 tcctaaggga gctgttgcct tcaacggtgc caattttatt gacgccaagg gctacgtggt 720 cctgagcgct ggtgcgctca aaattttgcg cggggttcaa aaactccggc ggcaacaggc 780 gcgatctgcg cgtcgcatgg ctgcctgccg ccgtgtgcgg ctggcagttt ttgctgctag 840 gctgccttcg cttttgagga aggcagatga agccacatct ggtggtttca aatacgtaga 900 tctaaacgca ccgagggtgg tgcggaaggc cgaaaagcgg ccgaagaaga aacccgccaa 960 gaaggcggtc aggcctgcct cccctgttga ggaggaaatt aactgggatg attttatcat 1020 tccagaatct gagaggactg cctccccgat gaaggaggaa aaaccaaagc gctctttggt 1080 ccccaattca ttggggtttg gctggtggcg cccagcctct ggaaatcttt gggatgttgt 1140 atcccaatgt cagcgtgcct gtgagggcac ttttcttgaa gcctctgctg aggcttgtct 1200 cgtgcgcgct ggcgtagatg atgtggccct ttctgtttgg gcccgaatct caaagagtgt 1260 tgtgcaatta tctgcatatt atgatgtcaa cacactgtta gagaattata ctgcactgtc 1320 tgagtgcacc atggatgaat tacaatctgt ggcagtgcag ttggattcag agtaccagga 1380 acttggacca cccacacatt ttacctgtgg gttatccaac tgggctcgtg gggcaggcaa 1440 aattctctat aattttgtag cccctactgt ggaagggata gcaggcgcag gatgccgtat 1500 tgttgagcgt gcctatgagt tgtccaagac cgttattgat gagattttca gcaaaatgaa 1560 atccctcttc tacgactgtt ttggcaactt atttggccat ttgaatgtgc tgctatctac 1620 aattgatagt ttttgggctc gcgcgtctac gtggataatg aacattcttg aaaagacgca 1680 tgattgcttg aaagtgctta gggacagtgc tgtctggtcc ctattgttaa ttttagttgg 1740 aggtttgata ctcctttctg aaaggttcct acaatccatt ggtataattt caaagccagg 1800 aaccattttg ggtatctttc ttgcaacttt tcttggcatc tttgggtaca ctttctttcg 1860 taaggacgat actttggtgt cagatctttt gtgtgccttc aagatagcca ttacaaatct 1920 tttccggaca aagcctggtc ctccagggtc tcctatcatt gtggacggtg atgtggtgat 1980 accggaaagt gctgttgcaa tgtccacgtg cagttttatg ggcggtcttg acattgcaat 2040 tgctgctatt ggaaatgttg gagcttccat ccttggtttt aaggttggag ctcttcaata 2100 tgcagccaag atcgccacct gcttagacca gttgcgcaag ggcaaggatg tgctcaaaga 2160 gatgacctgt tggatcattg aaacccttgg cgccctatgg aataaaatga ctggtcgtga 2220 agccactttc tttgatgaag tctctgccat tgtggcagtt gacattagag agtggcttga 2280 agagtctcaa aacctgtgcc tcgcagcaca aactttctcc atcggggata agattgttct 2340 cgaacagtgt gaacgtctta ttgctgatgg ccataaactt ttgcgaggca tgggtgatgc 2400 tgatcggaag ctttctagtt cttttctttc aacggtgcaa aggaaagttt ctgatcttga 2460 gaaaatacat actcagtctg tccgtgctgg gtattttgaa ggaagaagaa tggagccttt 2520 ttgggtgtac attcacggac cctcccattg tggtaaatct ctcttgatgg aacctatgtc 2580 tagggaatta ttaagagcgg gaggcttttc cgagtcgtct atctacacca agaattcttg 2640 tgataaatat tggtctaggt atagaagaca ggcttgtgtg cagattgatg atttgtcagc 2700 tggtaaaact gatccatctt tagagagcca gctcatcaat ctcgttgctt caaaagaggt 2760 gccattggat atggctgagg ttgaggacaa aggtatactt tttgactcag ctattcttgt 2820 cacctcttcc aacacagccc acgtgccaac aaatgcaaat gtgaaccatg cggaagctta 2880 caaaaaccgc atgaatgttg ttatccaatg taggaggaag cctgagtact cccctatggg 2940 tatggaactt gaaggcacgt tccaaccatt tgatccacgg aatccacaag cctcaatcga 3000 gtgcatgttg cagcatcgtg aaacgcatgc acctattact ggttggattt ctgctggagc 3060 tgccatggct gaggcagtta accaattccg cttgcacagg gagaaagaaa tgattttgca 3120 aagtaatcat ctttcttctt tccgtcctgc gcatcccatt tacactgagt gcgctacttt 3180 cttgagcatg tacgcacgag acgcaagttt tgtgccacca gtggatcttg gttgtaaatg 3240 ggagattcca agtggataca tgaccatagc tgctgtggat ggtcgtgttt ttggattttc 3300 acagcttggg gtgtgtactg aaatctccaa acaaatgaaa tttactgagg agatggaaca 3360 gtacaccctt gataaatttg ccccagatat tacgaagaca atggcttcac aaagccgttt 3420 taaactcgtt ggggcttttt tgaaaggaat gattagggag gaagacaatg ttgtttcgct 3480 tacctcccta ggcccaaaga gcactgcaac tcaaagagaa ttctttgaaa ctcttgggct 3540 tgctgagcgg gtgtatctcc gtgctgtaca aaagaaagtg aataaaattc gcacggatcc 3600 cgcatttgat gttgaggcgc tgcatgctag gctactgagc acaattgcaa cttcctatga 3660 gtatgttagg acttatgggc ctaaaatttt ccccatactc atgggatttg tttgtgtagt 3720 tttcgcatgc tatggattca tcatgcccct gctttctttc gcctcagggg gttctgctgt 3780 aggtgggatg gtcgcaatgg aacagatagc tgcggcttct gtagtttctt ctgggtcgag 3840 tccagttgcc caccgaaatc gtgcaccacc agtacaacca aggtatgcta ggcatcgttt 3900 agctggagct tcagccgaag atgcttatgc ttatgaagaa atgatggtgg tgttgtacgt 3960 tgattcaact gttgctccag ttgtcaacgc tgttagagga cctggtcgtc aattttttaa 4020 ctcgcaccag gccctcatga ttcccaacaa tagcaccgtt gtggctcatt tttccacacg 4080 tgatgttgtt gagattcatt gggagcatga cgtcgtcagg aaaggcgaaa agaaagacac 4140 cgaaattatt cagtatcgct gtccttctat tcctgaactc ccctctcgct gtaagaaata 4200 ttttgaatat gatttggaga gggacttccc tgggccattt actttggatg ccagctgtta 4260 tagaatgcag agtccaggga agattgacat agagctggta agttggactg accatgatcg 4320 ggaactccgc actcgccctt tagttattgc tgatccattt ggcgaggata gatatagaag 4380 ggagattccc cagtacattc aatatggcag accagatcaa ctccatgatt gtggtgctat 4440 ctgtgtggcc aaaattggag gtcaacatag aattgttggc ttagtcattt ccacagataa 4500 acacaatact ggggttggat tgttaccgtc ggcgcttcat atgacaacct gttccctttc 4560 ctatgtgcct gaggaatggg aggaggcgcc gcggggtttg aagaaattgg gttggaacga 4620 tcgttctgaa cttccacata tgccgcggaa aacccaatat gttgctgtta atgaggatct 4680 tgcgattcca tttgataacc ccaagatacc aagtgtcttg gtttcagatg atcctcgtac 4740 tgtaggcacg cccgttgagg gtaaagatcc tgtcttggtt gcaatggaaa aattttatga 4800 accaatgaca gattttacag aagaggaagt ccgcccaggt caaactgagg ttagtttatt 4860 tgaacaagtt tgtgatgaca ttgtgcaaac ttggtttgat gctggtgcgg aatttgagga 4920 tgtggaggat gatgtcgtga tcaatggtga tgatgatttt gataagctga tcatggacac 4980 atctgaaggt tatccctatg tgcttgagag aacgcatggg gaaaaaggaa aaacccgata 5040 ttttgagggt ggacctgggg cttacacttt aaagcctgga acttctgtat acaacgatta 5100 tcataaatta caggaagaag tccaggttga gggtggaatc cctgaaatgg tttgcatcga 5160 gtgccccaaa gatgaattgc ttgtggaacg taaagttcta caaaaattag gcactcgaaa 5220 ctttgaaata ttggaattgc ccaaaaacat gctttttaga aagaaattct tacattgggc 5280 tttgtttctc tcagacatgc gatggtgctt gccgtgtcag gtaggtattg tcgttcaggg 5340 gcgtgaatgg gggctcctga tggaccgtct tgctgcgaag aattcggttg catacaactg 5400 tgattattca aagtttgatg gcctcatgtc ttgtcaggtg ttggatgcta taggaaaaat 5460 ggtgaataaa tgctattcca atgccaaccc caatttaaaa aagaagggca agggcgagct 5520 gcccggtagt cctccccaat tagctaggta taatttgtta atgtccattt ttggtagaaa 5580 gtgcctagct agatcccaag tttttgaagt tcggggtggg atccgtcggg gtgcacttac 5640 cgttttattg aattctgtgt ttaatgaaat tctcatacgg tatgtgtaca aaactgtaat 5700 tccatcacca gagtttaacc gatttgaaac ttttgtgact ctggtggttt atggtgacga 5760 taacctcatt gcagttgatc cttcaatgca aaagattttc actggtgagg ttattaagaa 5820 aacattggca aggaagaaga tcactattac tgatggtagt gataaattat cccctgtgct 5880 tgaggctaaa ccccttgcgc agttggattt cttgaaacgt tccttccttg tttctgattc 5940 agggcaggtt atgccggcgc tagatagaac ttgtatatat tcttctttgt tgtatctgcg 6000 ctcagctgat tgcgacccaa tacctctctt gcaccaaaac gtgcaaaatg ctctgcaaga 6060 gttgtattac cgccaggatc gtgaagagtt tgataatctt cgaacctttt atctcgaaag 6120 attaccaatg tggcggaatg gtcagcatcg gttactggat tggaaccaat gtgctgaaca 6180 ctggcgggct cgttatacag gatgtccttc cgataatcct gctggtgttt tggatatgct 6240 ggttgaccca aggtgtaaaa gtttcatgct gccagctggt cctgctaatt ggtctatgcc 6300 gatagcagac cgcatttttg tctgtgggcc caagttttcc gcaagtgggc cctcatacac 6360 cttgtgtttc aatcgtcttg ctgcaggtga gacaggcgta caaataaagc ctgttcacgc 6420 tgcaactcaa ggagctatgc ctactgctaa atttgttgag agtttccgct ctataaagaa 6480 gagacctgag cttgaattag ccatctctgc ttatgagagc ggaagcaacc tatattttaa 6540 aggttgtgct ccttacaatg atatctgggc ttgtgcgata tctttttgtt ctgcttttgg 6600 atatgcccag aaacaagtac tcctccacat gtatgataat tgtaagcgtt taggggctag 6660 ttctttgagg agctacttca ataaaagctt ggttggcgat ggttgtgcac gtcgttgtga 6720 gattcacacg acgcctgcta ttgctaaaca agttgaacgc cttcttccac aggttcaatg 6780 caagcattgt gaatatgatc ctgagtttgc atcaaaacct actacccaat tgcgtaaatg 6840 cacagatcct ggtgtagatg gaggcaaggc gatgtatata gttcgtggcc taggtagaac 6900 tgcagccaag ctggtttgtt cagatatatg tgatggacat ttaatgtctt gtaacacttc 6960 atttgataaa atggttgtga atctgtttag gcgatcttgt tttaaatgcc tttaactagg 7020 tgcttgtttt tttctttgtt ttgattcttc taaccaggat tggtagccct gctggcatta 7080 gtttgctggt aaccatgctg tacatggttg gttagataga agcgtcaata aaccgggact 7140 ttaattagtt ccgttttagg ttcctgccct tattagggtg gtccggtcct taggtggatc 7200 gggaagctgt ataaactcag cttcttgggg cgagagccca agaatgtctg tctgtcagct 7260 gcttgtgtaa atgagctttc cccaggatag ctctcctggg cacacaagtg aaaactactg 7320 tcgtggcagg ttagtagcca gacgaccgga gtaaaatctc tagttaataa aatgtgttga 7380 gccgttgttt caggcagctt tgttgggtct attgagtttt ctaaagctgc tttgctattt 7440 gctgttgttt gagcccactg ttcatatttg gtttggggcc ttttatgttt cctagtgtcg 7500 tgtttgtcca acac 7514 //