ID U41000; SV 1; linear; genomic DNA; STD; PLN; 9449 BP. XX AC U41000; XX DT 05-APR-1996 (Rel. 47, Created) DT 14-FEB-2020 (Rel. 143, Last updated, Version 6) XX DE Zea mays copia-type retroelement PREM-2 gag gene, complete cds. XX KW . XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea. XX RN [1] RP 1-9449 RA Turcich M.P., Bokhari-Riza A., Hamilton D.A., He C., Messier W., RA Stewart C.-B., Mascarenhas J.P.; RT "PREM-2, a copia-type retroelement in maize is expressed preferentially in RT early microspores"; RL Sex. Plant Reprod. 9:65-74(1996). XX RN [2] RP 1-9449 RA Hamilton D.A., Turcich M.P., Mascarenhas J.P.; RT ; RL Submitted (20-NOV-1995) to the INSDC. RL Douglas A. Hamilton, Biology, Hartwick College, Miller Science Building, RL Oneonta, NY 13820, USA XX DR MD5; a32639fbd5b21a496d844768e4182d95. DR EuropePMC; PMC2576258; 18842156. XX FH Key Location/Qualifiers FH FT source 1..9449 FT /organism="Zea mays" FT /strain="W-22" FT /mol_type="genomic DNA" FT /note="contains ICTV exemplar Zea mays Prem2 virus; FT copia-type retroelement PREM-2" FT /db_xref="taxon:4577" FT misc_feature 1..5 FT /note="target site duplication" FT repeat_region 6..1313 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="5' LTR" FT primer_bind 1314..1326 FT gene 1361..2149 FT /gene="gag" FT CDS 1361..2149 FT /codon_start=1 FT /gene="gag" FT /db_xref="UniProtKB/TrEMBL:V9GZX7" FT /protein_id="AAB04689.1" FT /translation="MSGDHAKKEMETGEKPTTSHGSTSSEESRTKRKEKKKDSSKQKEK FT RSSSSHHKEKKEKSSSHKPHRKGDKHKRMRKVVYYETDTSSTSTSDSDAPSVTSNGQER FT KKYSKIPLRYPRISKHTPLLSVPLGKPPTFDGEDYARWSDLMRFHLTSLHKSIWDVVEF FT GAQVPSIGDENYDEDEVSQIEHFNSQATTILLASLSKEEYNKVQGLKMRRRFGTYSRRR FT TRVMNSPRSPNGKRSRGSSVVFVFAKGKSHKTCTTGSKPW" FT misc_feature 8125..8137 FT /note="polypurine tract" FT repeat_region 8137..9444 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="3' LTR" FT misc_feature 9445..9449 FT /note="target site duplication" XX SQ Sequence 9449 BP; 2749 A; 2116 C; 2176 G; 2408 T; 0 other; attattgaaa gggaattagg cttacaccta gttcctaaat aattttggtg gttgaattgc 60 ccaacacaaa tctttggact aactagtttg cccaagtgta tagattatac aggtgttaaa 120 ggttcacact cagccaatta aaagaccaag ttttggattc aacaaaggag caaaaggggc 180 aaccgaaggc acccctggtc tggcaccgga ctgtccggtg cgccaccgga catgtccggt 240 gcaccagggg gactcagact caaactcacc accttcggga attcacaggg tcgactcggc 300 tataattcac cggactgtcc ggtgtacacc ggacagtgtc cgtgcgccaa gggaggtcgg 360 cctcaggaac tcgccagctt cgggaaaagc caacggctcg tgcactataa ttcaccggac 420 tgtccggtgt gcaccggact gtccggtgcg actccggagc aacggtcatc tccgcgccaa 480 cggctctctg ccgcgcattt aatgcgctct gcgcgtgcag gagtcagaat cgcccatgct 540 agcacaccgg acatcaaaca gtacctgtcc ggtgtgcacc ggacacccag gcgggcccac 600 aagtcagaag ctccaacggt cagaatccaa cggcagtgat gacgtggcag ggggcaccgg 660 actgtccggt gtgcaccgga ctgtccggtg cgccatcgaa cagacagcct cccaacggcc 720 acatttggtg gttggggcta taaatacccc aaccacccca ccattcattg catccaagtt 780 ttctcacttc tcaaccactt acaagagcta ggcattcaat tctagacaca ttcaaagaga 840 tcaaatcctc tccaattcca cacaaaaccc tagtgactag tgagagtgat ttgccgtgtt 900 catttgagct cttgtgcttg gattgcttct tttctttctc acttgttctt gtgatcaaaa 960 ctccattgta atcaaggcaa gaggcaccaa ttgtgtggtg gcccttgcgg ggaagttttg 1020 ttcccggctt tgatttgaga agagaagctc actcggtccg agtgaccgtt tgagagaggg 1080 aagggttgaa agagacccgg cctttgtggc ctcctcaacg gggagtaggt ttgagagaac 1140 cgaacctcgg taaaacaaat ccgtgtgtca cacttcatta tttgctcgcg atttgttttg 1200 cgccctctct cgcggactcg tttatatttc taacactaac ccggcttgta gttgtgttta 1260 tatttgtaaa tttcagtttc gccctattca ccccccctct aggcgactat caattggtat 1320 cagagcccgg tgcttcatta gagcctaacc gctcgaagtg atgtcgggag atcacgccaa 1380 gaaggagatg gagaccggcg aaaagcccac tacaagccac gggagcactt catcggaaga 1440 gtcccgcacc aagaggaagg agaagaagaa ggactcctcc aaacagaagg agaaaaggtc 1500 ttcctcttct caccacaaag agaagaagga aaaatcttct tcccacaagc cgcatcggaa 1560 aggcgacaag cacaagagga tgaggaaggt ggtctactac gagaccgaca cttcatcaac 1620 atcgacctcc gactccgatg cgccatccgt cacttctaac ggccaagagc gcaagaagta 1680 tagtaagatc cccctacgct accctcgcat ttccaaacat acacctttac tttccgtccc 1740 attaggcaaa ccaccaactt ttgatggtga agattacgct aggtggagcg atttaatgcg 1800 atttcatcta acctcgctcc acaaaagcat atgggatgtt gttgagtttg gtgcgcaggt 1860 accgtccata ggggatgaga actatgatga ggatgaggtg tcccaaatcg agcatttcaa 1920 ctctcaagct acaaccattc tcctcgcctc tctaagcaag gaggaataca acaaagtgca 1980 agggttgaaa atgcgaagga gatttgggac ctactcaaga cggcgcacga gggtgatgaa 2040 ctcaccaaga tcaccaaacg ggaaacgatc gagggggagc tcggtcgttt tcgtcttcgc 2100 caaggggaag agccacaaga catgtacaac cggctcaaaa ccttggtgaa ccaagtgcgc 2160 aacctcggga gcgtaaagtg ggacgaccac gaggtggtta aggttattct aagatctctc 2220 attttcctta accccactca agttcaatta attcgtggta atcctagata tactaaaatg 2280 acccccgagg aagttatcgg gaattttgtg agctttgaat gcatgattaa aggttcaaag 2340 aagatcaacg agcttgacga accatccaca tccgaggcgc aaccggtagc cttcaaggca 2400 acggaggaca agaaggaaga gtctacacca agtagacaac caattgacgc ctccaagctc 2460 gacaatgagg agatggcttt aatcatcaaa agctttcgcc aaatcctcaa gcaacggaag 2520 gggaaggatt acaaatcccg ttccaagaag gtttgctaca agtgtggtaa gcccggtcac 2580 tttatcgcta aatgtccatt atcaagtgac agtgacaggg ataacgacaa gaagggcaag 2640 aggagagaaa agaaaaggta ctacaagaag aagggcggtg atgctcatgt ttgtcgggag 2700 tgggactccg acgaaagctc aagcgattcc tccgacgacg aggacgccgc caacatcgcc 2760 gtcaccaagg gactcctctt ccccaacgtc ggccacaagt gcctcatggc aaaggacggc 2820 aaaaagaaga aggttaaatc taactcctcc actaaatatg agtcttctag tgatgataat 2880 gctagtggtg aggaagataa tttgcgaact ctttttgcca accttaacat ggaacaaaag 2940 gagaaattaa atgaactaat tagtgccatc catgagaagg atgatctctt ggactcccaa 3000 gaggacttcc taatcaagga aaataagaaa catgttaagg ttaaaaactg ttacgcttta 3060 caagttgaaa aatgtgaaaa attatctagt gagctaagca cttgccgtga gataattgac 3120 aaccttagaa atgaaaatgc tagtttaaat gctaaggttg attctcatgt ttgtaatgtt 3180 tcaattccca atcctagaga taataatgat aatttgcttg ctaggattga agaattaaac 3240 atttctcttg ctagccttag attagagaat gaaaatttga ttgctaaggc taaagatttt 3300 gatgtttgca atgctaccat ttccgacctt agaactaaga atgaaatgtt gcatgctaag 3360 gttgtagaac ttaaatcttg caaaccctct acatctaatg ttgagcatgt ttctatttgc 3420 actagatgta gagttattga tgttaatgct attcatgacc acatgtcgtt aattaaacaa 3480 caaaatgatc acatagcaaa actagatgct aaaattgccg agcataactt agaaaatgaa 3540 aaatttaaat ttgctagaag tatgctctat aatgggagac accctggcat caaggatggc 3600 attggcttcc aaaggggaga caatgtcaaa cttaatgccc ctcctaagaa cttgtctaac 3660 tttgttaagg gcaaggctcc catgcctcag gataacgagg gctacatttt gtaccctgcc 3720 ggttatcccg agagcaaaat taggaaaatt cattctagga agtctcactc tggccctaat 3780 catgctttta tgtataaggg tgagacatct agctctaggc aaccaacccg tgccaagttg 3840 cctagaaaga aaactcctat tgcatcaaat gatcatgcta tttcatttaa aacttttgat 3900 gcttcttatg tgcttacaag caaatccggc aaggtagttg ccaaatttgt tgggggcaaa 3960 cacaagggat caaagacttg tgtttgggta cccaaagttc ttgtttctaa taccaaagga 4020 cccaaaacag tttgggtacc taaagtcaag aactaaattt gttttgtagg tttatgcatc 4080 cgggggctca agttggatac tcgacagcgg gtgcacaaac cacatgaccg gggagaaaag 4140 gatgttctcc tcatatgaga aaaaccaaga tccccaacga gctatcacat tcggggatgg 4200 aaatcaaggt ttggtcaaag gattgggtaa aattgctata tctcctgacc attctatttc 4260 caatgttttt cttgtagatt ctttagatta caacttgctt tctgtttccc aattatgtca 4320 aatgggctac aactgtcttt ttactgatgt aggtgtcact gtctttagaa gaagtgatga 4380 ttcaatagca tttaagggtg tgttagaggg tcagctatac ttagtagatt ttgatagagc 4440 tgagctcgac acatgcttaa ttgctaagac taacatgggt tggctctggc accgccgact 4500 agcccatgtt gggatgaaga atcttcataa gcttctaaag ggagagcaca ttttaggatt 4560 aacaaatgtt cattttgaga aagacaggat ttgtagcgca tgccaggcgg ggaagcaagt 4620 tggagtccat catccacaca agaacatcat gacgaccgac aggccgcttg agctactcca 4680 catggatcta ttcagcccga ttgcttacat aagcatcggc gggagtaagt attgtcttgt 4740 aatagtggat gattattctc gcttcacttg ggtattcttt ttacaggaaa aatctcaaac 4800 ccaagagacc ttaaaaggat tcttgagacg ggctcaaaat gagtttggct taaggatcaa 4860 gaaaataaga agtgacaacg ggacggagtt caagaactct caaatcaaag gttttcttga 4920 ggaggagggc atcaagcatg agttctcttc tccctacaca cctcaacaaa atggtgtagt 4980 ggagaggaag aatcgaactc tattggacat ggcaaggacc atgcttgatg agtacaagac 5040 gccggaccgg ttttgggccg aagcggtcaa caccgcctgc tacgccatca atcggttata 5100 tcttcaccga atcctcaaga agacatccta tgaactccta accggtaaaa agcccaacat 5160 ttcatacttt agagtttttg gtagcaaatg ctttattctt gttaaaagag gtagaaaatc 5220 taaatttgct cctaaaactg tagaaggctt tttacttggt tatgactcaa acacaagggc 5280 atatagggtc tttaacaagt ccactggact agttgaagtc tcatgtgacg ttgtgtttga 5340 tgaaactaac ggctctcaag tagagcaagt tgatcttgat gaaataggta atgaagaggc 5400 tccgtgcatc gtgctaagga acatgtccat tggggatgtg tgtcctaggg aatccgaaga 5460 gcctccaagt gcacaagatc aaccgtcctc ctccatgcaa gcatctccac caactcaaaa 5520 tgaggatgaa gctcaagttg atgaagggca aaatcaagaa gatgagccac ctcaagatga 5580 tggcaatgat caagggggag atgcaattga tcaagaaaag gaggatgagg aagaaccaag 5640 gccgccacac ccaagagtcc accaagcaat acaaagagat caccccgtcg acaccatcct 5700 cggcgacatt cataaggggg taactactcg atctcgggtt gcacatttct gtgagcatta 5760 ctcttttgtt tcctctattg agccacacag ggtggaggaa gcacttcaag attcggattg 5820 ggtggtggcg atgcaagagg aggtcaacaa cttcactagg aatgaggtat ggcatttagt 5880 tccacgtcct aaccaaaatg ttgtaggaac caaatgggtc ttccgcaaca aacaagatga 5940 gcatggtgtg gtgacaagga acaaagcacg acttgtggcc aaaggatact cccaagtcga 6000 aggtttggat ttcggtgaaa cctatgcacc cgtagctagg cttgagtcaa ttcgcatatt 6060 attagcctat gctacttacc atggctttaa gctttatcaa atggacgtga aaagtgcctt 6120 cctaaatgga ccaatcaagg aagaggtcta tgttgagcaa cctcccggct ttgaagacag 6180 tgagtaccct aaccatgtct ataggctctc taaggcgctt tatgggctca agcaagcccc 6240 aagagcatgg tatgaatgcc ttagagattt tcttattgca aatggattca aagtcggaaa 6300 agccgatcct acactcttta ctaaaactct tgaaaatgac ttgtttgtat gccaaattta 6360 tgttgatgat attatttttg ggtctactaa cgagtctaca tgtgaagagt ttagtaggat 6420 tatgacacag aaattcgaga tgtctatgat gggggagttg aagtatttct taggattcca 6480 agtaaagcaa ctccaagagg gcaccttcat tagccaaacg aagtacactc aagacatcct 6540 aagcaagttt ggaatgaagg atgccaagcc catcaagact cccatgggaa caaatgggca 6600 tctcgacctc gacacgggag gtaagtccgt ggatcaaaag gtataccggt cgatgattgg 6660 ttcattgctt tatttatgtg catctcgacc ggacattatg ctttccgttt gcatgtgtgc 6720 aagattccaa tccgacccta aggaatcaca ccttacggcc gtgaagcgaa tcttgagata 6780 tttggcttat actcctaagt ttgggctttg gtaccctcgg ggatccacat ttgatttgat 6840 tggttattcg gatgccgatt gggcggggtg taaaattaat aggaagagca catcggggac 6900 ttgccagttc ttgggaagat ccttggtgtc ttgggcttca aagaagcaaa attcggtcgc 6960 tctttccacc gccgaagccg agtacattgc cgcaggtcat tgttgcgcgc aattgctttg 7020 gatgaggcaa accctgcggg actacggtta caaattaacc aaagtccctt tgctatgtga 7080 taatgagagt gcaatcaaaa tggccgacaa tcccgtcgag catagccgca ctaagcacat 7140 agccattcgg tatcattttc ttagggatca ccaacaaaag ggggatatcg agatttctta 7200 cattaatact aaagatcaat tagccgatat ctttaccaag ccacttgatg aacaatcttt 7260 taccagactt aggcatgagc tcaatattct tgattctaga aatttctttt gctagcttgc 7320 acacatagct cataaatgta cctttgatca tgtctctctc atacgctatg actaatgtgt 7380 ttttcaagtc tatttcaaac caagtcatag gtatattgaa agggaattgg agtcttcggc 7440 gaagacaaag gcttccacta cgtaactcat acttcgccat cactccaagc atctctctat 7500 tccttgggga gaaatgagca ttaaagaaaa ggacttcgtc tttggtataa tcttaactca 7560 tttatttatg accaaagggg aagaaaagca cttcataggg ctctaatgat tctgtttttg 7620 gcgattcatg ccaaaggggg agaaaatatg agcccaaagc aaaaggaccg caccaccacc 7680 accaatttca aacttagtgt tttccaggaa gtatttatca attggaatcc tgttgtgttc 7740 aaaaggggga gaaagtagta ttaaaccctc ttgaacacta agaggaggat ttaatttagg 7800 gggagttttg tttagtcaaa ggaaaagcat ttgaaacagg gggagaaaat ttcaaatctt 7860 gaaaatgcct tgcaaaactc ttattcattt acctttgatt atttacaaaa gatctttgaa 7920 atggatttac aaaaagaatt tgcaaaaaca aaacatgtgg tgcaaacgtg gtccaaaatg 7980 ttatataaga aagaaacatt ccatgcatat cttgtaagta gttatattgg ctcaattcta 8040 agcaaccttt acacttacat tatgcaaact agttcaatta tgcacttcta tatttgcttt 8100 ggtttgtgtt ggcatcaatc accaaaaagg gggagattga aagggaatta ggcttacacc 8160 tagttcctac ataattttgg tggttgaatt gcccaacaca aatctttgga ctaactagtt 8220 tgcccaagtg tatagattat acaggtgtta aaggttcaca ctcagccaat taaaagacca 8280 agttttggat tcaacaaagg agcaaaaggg gcaaccgaag gcacccctgg tctggcaccg 8340 gactgtccgg tgcgccaccg gacatgtccg gtgcaccagg gggactcaga ctcaaactca 8400 ccaccttcgg gaattcacag ggtcgactcg gctataattc accggactgt ccggtgtaca 8460 ccggacagtg tccgtgtgcc aagggaggtc ggcctcagga actcgccagc ttcgggaaaa 8520 gccaacggct cgtgcactat aattcaccgg actgtccggt gtgcaccgga ctgtccggtg 8580 cgactccgga gcaacggtca tctccgcgcc aacggctctc tgccgcgcat ttaatgcgct 8640 ctgcgcgtgc aggagtcaga atcgcccatg ctggcacacc ggacatcaaa cagtacctgt 8700 ccggtgtgca ccggacaccc aggcgggccc acaagtcaga agctccaacg gtcagaatcc 8760 aacggcagtg atgacgtggc agggggcacc ggactgtccg gtgtgcaccg gactgtccgg 8820 tgcgccatcg aacagacagc ctcccaacgg ccacatttgg tggttggggc tataaatacc 8880 ccaaccaccc caccattcat tgcatccaag ttttctcact tctcaaccac ttacaagagc 8940 taggcattca attctagaca cattcaaaga gatcaaatcc tctccaattc cacacaaaac 9000 cctagtgact agtgagagtg atttgccgtg ttcatttgag ctcttgcgct tggattgctt 9060 cttttctttc tcacttgttc ttgtgatcaa aactccattg taatcaaggc aagaggcacc 9120 aattgtgtgg tggcccttgc ggggaagttt tgttcccggc tttgatttga gaagagaagc 9180 tcactcggtc cgagtgaccg tttgagagag ggaagggttg aaagagaccc ggcctttgtg 9240 gcctcctcaa cggggagtag gtttgagaga accgaacctc ggtaaaacaa atccgtgtgt 9300 cacacttcat tatttgctcg cgatttgttt tgcgccctct ctcgcggact cgtttatatt 9360 tctaacacta acccggcttg tagttgtgtt tatatttgta aatttcagtt tcgccctatt 9420 caccccccct ctaggcgact atcaattat 9449 //