ID U38239; SV 1; circular; genomic DNA; STD; VRL; 2759 BP. XX AC U38239; XX DT 25-OCT-1995 (Rel. 45, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 7) XX DE Tomato leaf curl virus - Bangalore II, complete genome. XX KW . XX OS Tomato leaf curl Karnataka virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2759 RA Chatchawankanphanich O., Chiang B.-T., Green S.K., Singh S.J., Mehta P., RA Maxwell D.P.; RT "Tomato leaf curl virus from Southern India: A monopartite RT whitefly-transmitted geminivirus"; RL Unpublished. XX RN [2] RP 1-2759 RA Maxwell D.P., Chatchawankanphanich O.; RT ; RL Submitted (10-OCT-1995) to the INSDC. RL Douglas P. Maxwell, Plant Pathology, University of Wisconsin, 1630 Linden RL Dr., Madison, WI 53706-1598, USA XX DR MD5; 384a011fe53a265a0002ad55c910af6e. DR EuropePMC; PMC110531; 9811744. DR EuropePMC; PMC2170441; 17963488. DR EuropePMC; PMC3002923; 21092241. DR EuropePMC; PMC3550711; 23637488. XX CC On Sep 24, 1996 this sequence version replaced gi:1037108. XX FH Key Location/Qualifiers FH FT source 1..2759 FT /organism="Tomato leaf curl Karnataka virus" FT /strain="Bangalore II, India" FT /isolate="isolate 2" FT /mol_type="genomic DNA" FT /clone="recombinant plasmid pIND9 (infectious clone)" FT /note="cloned from field sample of tomato (Lycopersicon FT esculentum) with typical tomato leaf curl symptoms FT collected in Dec. 1993 in Bangalore, India by Dr. S.J. FT Singh; Cloned from PCR fragments. Tomatoes can be infected FT by mechanical inoculation with cloned DNA and whiteflies FT can transmit this virus from these infected plants" FT /db_xref="taxon:220932" FT rep_origin join(1..12,2606..2759) FT CDS 144..500 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /note="function unknown" FT /db_xref="GOA:Q88551" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q88551" FT /protein_id="AAB08928.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHSRFEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCP" FT CDS 304..1074 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="cp; protein for encapsidation of viral DNA" FT /db_xref="GOA:Q88552" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q88552" FT /protein_id="AAB08929.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAVAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1071..1475) FT /codon_start=1 FT /gene="C3" FT /product="unknown" FT /note="may enhance viral replication" FT /db_xref="GOA:Q98741" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q98741" FT /protein_id="AAB08930.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMNQDI FT ITVQVQFNHNLRKVLGIHKCFLVYRIWMTLQPPTGRFLRVFKTQVLKYLNNLGVISINN FT VIRAVDHVLWNVLHHVVYVDQTCSIKFNIY" FT CDS complement(1216..1620) FT /codon_start=1 FT /gene="C2" FT /product="unknown" FT /note="trap; may be involved in transactivation of V1 ORF FT expression" FT /db_xref="GOA:Q98742" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q98742" FT /protein_id="AAB08931.1" FT /translation="MRPSSPPRAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA FT CHDHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRASQPAIPDEPRHHHRPSTVQSQP FT EESVGDTQMFPSLPNLDDLTASDWSFLKGI" FT CDS complement(1523..2608) FT /codon_start=1 FT /gene="rep" FT /product="replication-associated protein" FT /note="C1; DNA-nicking protein; helicase homolog; DNA FT binding protein to the origin of replication" FT /db_xref="GOA:Q98743" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q98743" FT /protein_id="AAB08932.1" FT /translation="MAAPNRFKLNAKNYFLTYPKCSLTKEEALSQFLNLQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKIEALNILREKAPKDYVLQFH FT NLNSNLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVNAAARPLRPVSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPNYLKHFKEFMGAQRDW FT QSNRKYNKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSKLKNWAIKNATFVTPEGPL FT YSGTNQSAAQASQEGDQTSTS" FT CDS complement(2158..2451) FT /codon_start=1 FT /gene="C4" FT /product="unknown" FT /note="may be involved in symptom expression" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q98744" FT /protein_id="AAB08933.1" FT /translation="MGLLTYMFSSSSKENSSARTIDSSTLPPQPGQHISIRTFRELKAQ FT AMSKPTWRKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSTQGQKLRPSIY" XX SQ Sequence 2759 BP; 738 A; 544 C; 629 G; 848 T; 0 other; accggatggc cgcgaatttt tttgtgggcc cctcaacgca ctaactgaca aggacatgct 60 aaccaatcac atgacgcgct caaagcttaa ttgttttgtg gtcccctatt taaacttcgg 120 caccaagtat tgtattttgc actatgtggg atccattgtt aaacgagttt cctgaaaccg 180 ttcacggttt tagatgtatg ttagcagtta aatatctgca attagtagaa aagacctatt 240 ctcccgacac attaggttac gatttaatta gggatttaat ttcagttatt agggctagaa 300 attatgtcga agcgaccagc agatataatc atttccactc ccgcttcgaa ggtacgtcgc 360 cgtctcaact tcgacagccc atatgtgagc cgtgctgttg cccccattgt ccgcgtcacc 420 aaagcaaaag catgggcgaa caggcccatg aacagaaagc ccaggatgta caggatgtac 480 agaagtccag atgtccctag aggatgtgaa ggcccatgta aggtccagtc gtttgagtcc 540 agacacgatg tagtccatat aggcaaggtc atgtgtatta gtgatgtcac tcgtggaacc 600 gggctgaccc atagagttgg taagcgtttt tgtgttaagt ctgtttacgt tttggggaag 660 atatggatgg atgagaacat caagaccaag aatcatacga acagtgtcat gttttttctt 720 gttcgtgacc gtcgtcctgt tgacaagcca caagactttg gagaggtgtt caatatgttt 780 gacaacgagc ctagcactgc tactgttaag aatatgcaca gagatcgtta tcaggtgttg 840 aggaagtggc atgcaactgt caccggtgga cagtacgctt caaaggaaca ggcattagtg 900 aagaagtttg ttagggttaa taattatgtt gtttataacc agcaagaggc tgggaaatat 960 gagaatcata ctgaaaatgc attgatgttg tatatggcgt gtactcacgc ctctaaccct 1020 gtgtatgcta ctttgaagat acggatctat ttttatgatt cagtatcgaa ttaataaata 1080 ttgaatttta ttgaacatgt ttggtctaca tatacaacgt ggtgtaatac attccataat 1140 acatgatcaa cggctctaat tacattgtta atactgataa ctcctaaatt atttaagtac 1200 ttaagcactt gggtcttaaa tacccttaag aaacgaccag tcggaggctg taaggtcatc 1260 cagattcggt agactaggaa acatttgtgt atccccaaca ctttcctcag gttgtgattg 1320 aactgtactt ggacggtgat gatgtcttgg ttcatcagga atggccggtt gtgatgctct 1380 gttatcttga aatatagggg attttgaatc tcccagataa acacgccatt ctctgcttga 1440 gctgcagtga tgagttcccc tgtgcgtgaa tccatggtcg tgacaggcta atgctatgaa 1500 gtaagaacag ccgcacggta gatcaactcg tcgacgtctg gtccccttct tggctagcct 1560 gtgctgcact ttgattggta cctgagtaga gtgggccctc gggggtgacg aaggtcgcat 1620 tctttatagc ccagtttttt agtttagaat tcttttcttc atccaagaat tctttatagc 1680 tggagttggg tcctggattg cagaggaaga ttgtgggaat tccgccttta atttgaactg 1740 gcttattgta ctttctattt gattgccagt ccctttgggc ccccatgaat tccttaaagt 1800 gctttaggta gttggggtct acgtcatcaa ttacgttata ccacgcatca ttactgtaga 1860 cctttgggct aaggtctaga tgaccacaca aataattatg tggtcccagt gatctggccc 1920 acattgtttt ccccgtccta ctgtcaccct caatcactat acttacgggc ctcaaaggcc 1980 gcgcagcggc attgacgacg ttctcggcag cccattcctc aagttcttct ggaacctgat 2040 caaaggaaga agaagaaaaa ggagaaacat aaacctccat tggaggtgta aaaatcctat 2100 ctaaattaga atttaaattg tgaaattgta aaacataatc tttgggagcc ttctccctta 2160 atatattgag ggcctcaatt tttgaccctg cgttgattgc ctcggcatat gcgtcgttgg 2220 cagattggca acctcctcta gctgatcttc catcgacttg gaaaactcca tgatcaagga 2280 tgtctccgtc tttctccatg taggttttga catcgcttga gcttttagct ccctgaatgt 2340 tcggatggaa atgtgctgac ctggttgggg aggtaaggtc gaagaatcta ttgttcttgc 2400 actggaattt tccttcgaac tggatgagaa catgtaagtg aggagtccca tcttcgtgaa 2460 gctctctgca gattctaatg aattttttag aagttggtgt ttggagattt aagaattggg 2520 aaagtgcttc ttctttagtg agggagcact tgggataagt gagaaaataa ttttttgcat 2580 ttaatttaaa ccgatttggg gctgccatgt tgacttagtc aatcggtgtc tctcaatttg 2640 ttctatgtat cggtgtactg gagtcctata tatatggaga ctctaatggc ataattgtaa 2700 taatagaact ttaatttgaa attcaaaata aaaggctaaa cggccatccg tataatatt 2759 //