Dbfetch
ID U35772; SV 1; linear; mRNA; STD; VRL; 3237 BP. XX AC U35772; XX DT 11-OCT-1995 (Rel. 45, Created) DT 08-MAR-2000 (Rel. 63, Last updated, Version 3) XX DE Barley stripe mosaic virus Type strain RNA beta, coat protein, beta-b, DE beta-c, and beta-d protein genes, complete cds. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RX DOI; 10.1016/0378-1119(88)90175-8. RX PUBMED; 3246352. RA Petty I.T., Hunter B.G., Jackson A.O.; RT "A novel strategy for one-step cloning of full-length cDNA and its RT application to the genome of barley stripe mosaic virus"; RL Gene 74(2):423-432(1988). XX RN [2] RX DOI; 10.1016/0042-6822(89)90601-6. RX PUBMED; 2763456. RA Petty I.T., Hunter B.G., Wei N., Jackson A.O.; RT "Infectious barley stripe mosaic virus RNA transcribed in vitro from RT full-length genomic cDNA clones"; RL Virology 171(2):342-349(1989). XX RN [3] RP 1-3237 RA Edwards M.C.; RT ; RL Submitted (08-SEP-1995) to the INSDC. RL Michael C. Edwards, U.S. Dept. of Agriculture, Agricultural Research RL Service, Northern Crop Science Laboratory, 1307 18th Street North, Fargo, RL ND 58105-5677, USA XX DR MD5; 7158fd15cae9988a4d4ff833c95fd19c. DR EuropePMC; PMC4072989; 24887356. DR EuropePMC; PMC4425524; 25955840. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX FH Key Location/Qualifiers FH FT source 1..3237 FT /organism="Barley stripe mosaic virus" FT /chromosome="RNA beta" FT /host="Hordeum vulgare" FT /lab_host="Hordeum vulgare" FT /strain="Type" FT /mol_type="mRNA" FT /clone="pTypebeta26" FT /note="This sequence is that of a full-length clone from FT which infectious RNA transcripts can be produced." FT /db_xref="taxon:12327" FT CDS 90..686 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q89433" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q89433" FT /protein_id="AAA79160.1" FT /translation="MPNVSLTAKGGGHYNEDQWDTQVVEAGVFDDWWVHVEAWNKFLDN FT LRGINFSVASSRSQVAEYLAALDRDLPADVDRRFAGARGQIGLPNYLPAPKFFRLDKRT FT IAELTRLSRLTDQPHNNRDIELNRAKRATTNPSPPAQAPSENLTLRDVQPLKDSALHYQ FT YVLIDLQSARLPVYTRKTFERELALEWIIPDAEEA" FT CDS 804..2342 FT /codon_start=1 FT /product="beta-b protein" FT /db_xref="GOA:Q65725" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q65725" FT /protein_id="AAA79161.1" FT /translation="MDMTKTVEEKKTNGTDSVKGVFENSTIPKVPTGQEMGGDDSSTSK FT LKETLKVADQTPLSVDNGAKSKLDSSDRQVPGPKLATTVEKEPELKPNVKKSKKKRIQK FT PAQPSRPNDLKGGTKGSSQVGENVSENYTGISKEAAKQKQKTPKSVKMQSNLADKFKAN FT DTRRSELINKFQQFVHETCLKSDFEYTGRQYFRARSNFFEMIKLASLYDKHLKECMARA FT CTLERERLKRKLLLVRALKPAVDFLTGIISGVPGSGKSTIVRTLLKGEFPAVCALANPA FT LMNDYSGIEGVYGLDDLLLSAVPITSDLLIIDEYTLAESAEILLLQRRLRASMVLLVGD FT VAQGKATTASSIEYLTLPVIYRSETTYRLGQETASLCSKQGNRMVSKGGRDTVIITDYD FT GETDGTEKNIAFTVDTVRDVKDCGYDCALAIDVQGKEFDSVTLFLRNEDRKALADKHLR FT LVALSRHKSKLIIRADAEIRQAFLTGDIDLSSKASNSHRYSAKPDEDHSWFKTK" FT CDS 2311..2706 FT /codon_start=1 FT /product="beta-c protein" FT /db_xref="GOA:Q76TM5" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q76TM5" FT /protein_id="AAA79162.1" FT /translation="MKTTVGSRPNKYWPIVAGIGVVGLFAYLIFSNQKHSTESGDNIHK FT FANGGSYRDGSKSISYNRNHPFAYGNASSPGMLLPAMLTIIGIISYLWRTRDSVLGDSG FT GNNSCGEDCQGECLNGHSRRSLLCDIG" FT CDS 2516..2983 FT /codon_start=1 FT /product="beta-d protein" FT /db_xref="GOA:Q89453" FT /db_xref="InterPro:IPR007617" FT /db_xref="UniProtKB/TrEMBL:Q89453" FT /protein_id="AAA79163.1" FT /translation="MAMPHPLECCCPQCLPSSESFPIYGEQEIPCSETQAETIPAEKTV FT RANVLTDILDDHYYAILASLFIIALWLLYIYLSSIPTETGPYFYQDLNSVKIYGIGATN FT PEVIAAIHHWQKYPFGESPMWGGLVSVLSVLLKPLTLVFALSFFLLLSSKR" XX SQ Sequence 3237 BP; 941 A; 643 C; 747 G; 906 T; 0 other; gtaaaagaaa aggagcaacc ctgttgttgt tcgacgctat actaaatata tattatctta 60 ttagtgcatt tcttttaccg cttcacagta tgccgaacgt ttctttgact gctaagggtg 120 gaggacacta caacgaggat caatgggata cacaagttgt ggaagccgga gtatttgacg 180 attggtgggt ccacgtagaa gcctggaata aatttctaga caatttacgt ggtatcaact 240 ttagcgttgc ttcctctcgg tcgcaagtcg ctgaatactt agctgcgtta gatcgtgatc 300 tacctgctga tgtagacaga cggtttgcag gtgctagagg acaaattggt ttacccaatt 360 atcttcctgc gccaaaattc tttcgtctcg ataagcgaac tatcgctgaa ctgactagac 420 tctctcgtct tacggatcag ccgcacaaca atcgtgatat agagcttaac cgagcgaaaa 480 gagccacaac taacccatct cccccggcgc aggcaccgtc ggagaatctt actcttcgtg 540 atgttcaacc gttaaaggat agtgcgttgc attatcaata cgtgttgatt gacctacaga 600 gtgcgagact cccagtgtat accaggaaga ctttcgaacg tgaactcgct ttggaatgga 660 tcattccaga tgccgaggaa gcgtgacctg ctgttgaagc ggtaaaagga tgtacatatg 720 tatcttattt attttgttta tctattttct tttactttta gtttttgctt tttacgcgtt 780 aactagatgt attgacttta gccatggaca tgacgaaaac tgttgaggaa aagaaaacaa 840 atggaactga ttcagtgaaa ggtgtttttg aaaactcgac gattcccaaa gttccgactg 900 gacaggaaat gggtggtgac gattcttcta cttctaaatt aaaggaaact ctaaaagttg 960 ccgatcagac tccattgtcc gttgacaatg gtgccaaatc caaattggat tcttctgata 1020 gacaagttcc tggtcctaag ttggcaacaa ctgtggaaaa ggaacctgag ttgaaaccca 1080 acgttaagaa gtccaagaag aaaagaatcc aaaaacctgc tcaaccgagt aggcccaatg 1140 accttaaagg cgggactaag ggatcatctc aagtgggtga aaatgtgagt gagaactata 1200 ctgggatttc taaggaagca gctaagcaaa agcagaagac acccaagtct gtgaaaatgc 1260 aaagcaatct ggccgataag ttcaaagcga atgatactcg tagatcggaa ttaattaaca 1320 agtttcagca atttgtgcat gaaacctgtc ttaaatctga ttttgagtac actggtcgac 1380 agtatttcag agctagatca aatttctttg aaatgattaa gctcgcatcc ttgtatgaca 1440 aacatctaaa ggaatgtatg gcgcgagcct gcaccctaga acgagaacga ttgaagcgta 1500 agttactcct agtacgagct ttgaaaccag cagttgactt ccttacggga atcatctctg 1560 gagttcctgg ctcaggaaaa tcaaccattg tgcgtacttt gctcaaaggt gaatttccgg 1620 ctgtttgtgc tttggccaat cctgccttaa tgaacgacta ttctggtatt gaaggcgttt 1680 acgggttaga tgacctgttg ctttctgcag ttccgataac gtctgattta ttgatcatag 1740 atgaatatac acttgctgag agcgcggaaa tcctgttgtt acaacgaaga ctcagagcct 1800 ctatggtgtt gttagtcggg gatgtagctc aaggaaaagc caccactgct tccagtattg 1860 agtatttaac tctgccggtg atctacagat cagagacgac ttatcgtttg ggacaagaga 1920 ctgcttcgct ttgcagcaag cagggtaaca gaatggtttc aaagggtgga agggacacag 1980 tgatcattac tgattacgat ggcgaaacag atggaacgga gaaaaatatc gcttttactg 2040 tcgatacagt tcgagatgtg aaagattgcg ggtacgattg tgccctggca attgatgtgc 2100 aagggaaaga attcgattca gtgactttat tcctaaggaa cgaagaccgg aaagctttag 2160 cagataagca tttgcgttta gtcgctttga gcagacataa gtcgaagtta atcatcaggg 2220 ccgacgcgga aattcgtcaa gcattcctga caggtgatat tgacttgagc tctaaggcga 2280 gtaactctca tcgttattct gcaaaaccgg atgaagacca cagttggttc aagaccaaat 2340 aagtattggc caattgtcgc cggaatcggt gtcgttggat tgtttgcgta tttgatcttt 2400 tcaaatcaaa aacattctac ggaatccggc gataatattc acaaattcgc caacggaggt 2460 agttacaggg acgggtcaaa gagtataagt tataatcgta atcatccttt tgcctatggc 2520 aatgcctcat cccctggaat gttgttgccc gcaatgctta ccatcatcgg aatcatttcc 2580 tatttatggc gaacaagaga ttccgtgctc ggagactcag gcggaaacaa ttcctgcgga 2640 gaagactgtc agggcgaatg tcttaacgga cattctcgac gatcattact atgcgatatt 2700 ggctagtctt tttatcattg ctctatggct attgtatata tatctaagca gtatacctac 2760 ggagactggt ccctacttct atcaagatct gaactctgtg aagatctatg gaataggggc 2820 tacgaatcca gaagttattg cggccatcca ccattggcag aagtaccctt ttggggaatc 2880 tccgatgtgg ggaggtttag tcagtgtttt gagcgttctt cttaaaccgc tgacgttagt 2940 ttttgcgtta agcttttttc tcttactttc ttcaaaaagg taaaaaaaaa aaaaaaaaat 3000 gtttgatcag atcattcaaa tctgatggtg cccatcaacc atatgatggg agtgtttgca 3060 agtccactat aatcgaactt gaaaacgatg cctgaattgg aaaccatgaa tcttaacgga 3120 ttctggagag aaaatctagg aattggtatg taagctacaa cttccggtag ctgcgtcaca 3180 ttttaagagt gtgcatactg agccgaagct cagcttcggt cccccaaggg aagacca 3237 //