Dbfetch
ID U35771; SV 1; linear; mRNA; STD; VRL; 3249 BP. XX AC U35771; XX DT 11-OCT-1995 (Rel. 45, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 2) XX DE Barley stripe mosaic virus CV42 RNA beta, coat protein, beta-b, beta-c, and DE beta-d protein genes, complete cds. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RX DOI; 10.1006/viro.1994.1271. RX PUBMED; 8178475. RA Weiland J.J., Edwards M.C.; RT "Evidence that the alpha a gene of barley stripe mosaic virus encodes RT determinants of pathogenicity to oat (Avena sativa)"; RL Virology 201(1):116-126(1994). XX RN [2] RP 1-3249 RA Edwards M.C.; RT ; RL Submitted (08-SEP-1995) to the INSDC. RL Michael C. Edwards, U.S. Dept. of Agriculture, Agricultural Research RL Service, Northern Crop Science Laboratory, 1307 18th Street North, Fargo, RL ND 58105-5677, USA XX DR MD5; 3cbce14b0821e82324a0c94bd876465c. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX FH Key Location/Qualifiers FH FT source 1..3249 FT /organism="Barley stripe mosaic virus" FT /chromosome="RNA beta" FT /host="Hordeum vulgare" FT /lab_host="Hordeum vulgare" FT /strain="CV42" FT /mol_type="mRNA" FT /clone="pCV42beta3" FT /note="This sequence is that of a full-length clone from FT which infectious RNA transcripts can be made." FT /db_xref="taxon:12327" FT CDS 91..687 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q89433" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q89433" FT /protein_id="AAA79156.1" FT /translation="MPNVSLTAKGGGHYNEDQWDTQVVEAGVFDDWWVHVEAWNKFLDN FT LRGINFSVASSRSQVAEYLAALDRDLPADVDRRFAGARGQIGLPNYLPAPKFFRLDKRT FT IAELTRLSRLTDQPHNNRDIELNRAKRATTNPSPPAQAPSENLTLRDVQPLKDSALHYQ FT YVLIDLQSARLPVYTRKTFERELALEWIIPDAEEA" FT CDS 805..2337 FT /codon_start=1 FT /product="beta-b protein" FT /db_xref="GOA:Q65723" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q65723" FT /protein_id="AAA79157.1" FT /translation="MDLTKTVEEKKTNRTDSVKGVFENSTIPKVPTGQEMGGDDSSTSK FT LKETLKVADQTPLFVDNGAKSKLDSSDRQVPGPKLATTVEQKPELKPNVKKSKKKRIQK FT PAQPSRPNDLKGGTKGSSQVGENVSENYTGISKEAAKQKTPKSVKMQSNLADKFKANDT FT RRSELINKFQQFVHETCLKSDFEYTGRQYFRARSNFFEMIKLASLYDKHLKECMARACT FT LERERLKRKLLLVRALKPAVDFLTGIISGVPGSGKSTIVRTLLKGEFPAVCALANPALM FT NDYSGIEGVYGLDDLLLSAVPITSDLLIIDEYTLAESAEILLLQRRLRASMVLLVGDVA FT QGKATTASSIEYLTLPVIYRSETTYRLGQETASLCSKQGNRMVSKGGKDTVIITDYDGE FT TDETEKNIAFTVDTVRDVKDCGYDCALAIDVQGKEFDSVTLFLRNEDRKALADKHLRLV FT ALSRHKSRLIIRADAEIRQAFLTGDIDLSSKASNSHRYSAKPDEDHSWFKAK" FT CDS 2306..2701 FT /codon_start=1 FT /product="beta-c protein" FT /db_xref="GOA:Q65724" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q65724" FT /protein_id="AAA79158.1" FT /translation="MKTTVGSRPNKYWPIVAGIGVVGLFAYLVFSNQKHSTESGDNIHK FT FANGGSYRDGSKSISYNRNHPFAYGNASSPGMLLPAMLTIIGIISYLWRTRDSVLGDSG FT GNNSCGEDCQGECLNGHSRRSLLCDIG" FT CDS 2511..2978 FT /codon_start=1 FT /product="beta-d protein" FT /db_xref="GOA:Q89453" FT /db_xref="InterPro:IPR007617" FT /db_xref="UniProtKB/TrEMBL:Q89453" FT /protein_id="AAA79159.1" FT /translation="MAMPHPLECCCPQCLPSSESFPIYGEQEIPCSETQAETIPAEKTV FT RANVLTDILDDHYYAILASLFIIALWLLYIYLSSIPTETGPYFYQDLNSVKIYGIGATN FT PEVIAAIHHWQKYPFGESPMWGGLVSVLSVLLKPLTLVFALSFFLLLSSKR" XX SQ Sequence 3249 BP; 953 A; 645 C; 745 G; 906 T; 0 other; gtaaaagaaa aaggagcaac cctgctgttg ttcgacgcta tactaaatat atattatctt 60 attagtgcat ttcttttacc gcttcacagt atgccgaacg tttctttgac tgctaagggt 120 ggaggacact acaacgagga tcaatgggat acacaagttg tggaagccgg agtatttgac 180 gattggtggg tccacgtaga agcctggaat aaatttctag acaatttgcg tggtatcaac 240 tttagcgttg cttcctctcg gtcgcaagtc gctgaatact tagctgcgtt agatcgtgat 300 ctacctgctg atgtagacag acggtttgca ggtgctagag gacaaattgg tttacccaat 360 tatcttcctg cgccaaaatt ctttcgtctc gataagcgaa ctatcgctga actgactaga 420 ctctctcgtc ttacggatca gccgcacaac aatcgtgata tagaacttaa ccgagcgaaa 480 agagccacaa ctaacccatc tcccccggcg caggcaccgt cggagaatct tactcttcgt 540 gatgttcaac cgttaaagga tagtgcgttg cactatcaat acgtgttgat tgacctacag 600 agtgcgagac tcccagtgta taccaggaag actttcgaac gtgaactcgc tttggaatgg 660 atcattccag atgccgagga agcgtgacct gctgtcgaag cggtaaaagg atgtacatat 720 gtatcttatt tattttgttt atctattttc ttttactttt agtttttgct ttttacgcgt 780 taactagatg tattgacttt agccatggac ctgacgaaaa ctgttgagga aaagaaaaca 840 aatagaactg attcagtgaa aggtgttttt gaaaactcga cgattcccaa agttccgact 900 ggacaggaaa tgggtggtga cgattcttct acttctaaat taaaggaaac tctgaaagtt 960 gccgatcaga ctccattgtt cgttgacaac ggtgccaaat ccaaattgga ttcttctgat 1020 agacaagttc ctggtcctaa gttggcaaca actgtggaac agaaacctga gttgaaaccc 1080 aacgttaaga agtccaagaa gaaaagaatc caaaaacctg ctcaaccgag taggcccaat 1140 gaccttaaag gcgggactaa gggatcatct caagtgggtg aaaatgtgag tgagaactat 1200 actgggattt ctaaggaagc agctaagcaa aagacgccca agtctgtgaa aatgcaaagc 1260 aatctggccg ataagttcaa agcgaatgat actcgtagat cggaattaat taacaagttt 1320 cagcaatttg tgcatgaaac ctgtcttaaa tctgattttg agtacactgg tcgacagtat 1380 ttcagagcta gatcaaattt ctttgaaatg attaagctcg catccttgta tgacaaacat 1440 ctaaaggaat gtatggcgcg agcctgcacc ctagaacgag aacgattgaa gcgtaagtta 1500 ctcctagtac gagctttgaa accagcagtt gacttcctta cgggaatcat ctctggagtt 1560 cctggctcag gaaaatcaac cattgtgcgt actttgctca aaggtgaatt tccggctgtt 1620 tgtgctttgg ccaatcctgc cttaatgaac gattattctg gtattgaagg cgtttacggg 1680 ttagatgacc tgttgctttc tgcagttccg ataacgtctg atttattgat catagatgaa 1740 tatacacttg ctgagagcgc ggaaatcctg ttgttacaac gaagactcag agcctctatg 1800 gtgttgttag tcggggatgt agctcaagga aaagccacca ctgcttccag tattgagtat 1860 ttaactctgc cggtgatcta cagatcagag acgacttatc gtttgggaca agagactgct 1920 tcgctttgca gcaagcaggg taacagaatg gtttcaaagg gtggaaagga tacagtgatc 1980 attactgatt acgatggcga aacagatgaa acggagaaaa atatcgcttt tactgtcgat 2040 acagttcgag atgtgaaaga ttgcgggtac gattgtgccc tggcaattga tgtgcaaggg 2100 aaagaattcg attcagtgac tttattccta aggaacgaag accggaaagc tttagcagat 2160 aagcatttgc gtttagtcgc tttgagcaga cataagtcga ggttaatcat cagggccgac 2220 gcggaaattc gtcaagcttt cctgacaggt gatattgact tgagctctaa ggcgagtaac 2280 tctcatcgtt attctgcaaa accggatgaa gaccacagtt ggttcaaggc caaataagta 2340 ttggccaatt gtcgccggaa tcggtgtcgt tggattgttc gcgtatttgg tcttttcaaa 2400 tcaaaaacat tctacggaat ccggtgataa tattcacaag ttcgccaacg gaggtagtta 2460 cagagacggg tcaaagagta taagttataa tcgtaatcat ccttttgcct atggcaatgc 2520 ctcatcccct ggaatgttgt tgcccgcaat gcttaccatc atcggaatca tttcctattt 2580 atggcgaaca agagattccg tgctcggaga ctcaggcgga aacaattcct gcggagaaga 2640 ctgtcagggc gaatgtctta acggacattc tcgacgatca ttactatgcg atattggcta 2700 gtctttttat cattgctcta tggctattgt atatatatct aagcagtata cctacggaga 2760 ccggtcctta cttctatcaa gatctgaact ctgtgaagat ctatggaata ggggctacga 2820 atccagaagt tattgcggcc atccaccatt ggcagaagta cccttttggg gaatctccga 2880 tgtggggagg tttagtcagt gttttgagtg ttcttcttaa accgctgaca ttagtttttg 2940 cgttaagctt ttttctctta ctttcttcaa aaaggtaaaa aaaaaaaaaa aaaaaaaaaa 3000 aaaaaaaaaa atgtttgatc agatcattca aatctgatgg tgcccatcaa ccatatgatg 3060 ggagtgtttg caagtccact ataatcgaac ttgaaaacga cgcctgaatt ggaaaccatg 3120 aatcttaacg gattctggag agaaaattta ggaattggta tgtaagctac aacttccggt 3180 agctgcgtca cactttaaga gtgtgcatac tgagccgaag ctcagcttcg gtcccccaag 3240 ggaagacca 3249 //