ID U35766; SV 1; linear; mRNA; STD; VRL; 3790 BP. XX AC U35766; XX DT 11-OCT-1995 (Rel. 45, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 2) XX DE Barley stripe mosaic virus CV17 RNA alpha, alpha protein gene, complete DE cds. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RX PUBMED; 8664501. RA Edwards M.C.; RT "Mapping of the seed transmission determinants of barley stripe mosaic RT virus"; RL Mol. Plant Microbe Interact. 8(6):906-915(1995). XX RN [2] RP 1-3790 RA Edwards M.C.; RT ; RL Submitted (08-SEP-1995) to the INSDC. RL Michael C. Edwards, U.S. Dept. of Agriculture, Agricultural Research RL Service, Northern Crop Science Laboratory, 1307 18th Street North, Fargo, RL ND 58105-5677, USA XX DR MD5; 2acc3a09bd13d03f853ec58196309520. DR EuropePMC; PMC3915304; 24499968. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX FH Key Location/Qualifiers FH FT source 1..3790 FT /organism="Barley stripe mosaic virus" FT /chromosome="RNA alpha" FT /host="Hordeum vulgare" FT /lab_host="Hordeum vulgare" FT /strain="CV17" FT /mol_type="mRNA" FT /clone="pCV17alpha75" FT /note="This sequence is that of a full-length clone from FT which infectious RNA transcripts can be produced." FT /db_xref="taxon:12327" FT CDS 92..3511 FT /codon_start=1 FT /product="alpha protein" FT /db_xref="GOA:Q65714" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q65714" FT /protein_id="AAA79145.1" FT /translation="MASDEIVRNLISREEVMGNLISTASSSVRSPLHDVLCSHVRTIVD FT SVDKKAVSRKHVDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYL FT LDMVPMKETFVYDIGGNWFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYMRGS FT KDKPLRLLSRYQNILREQAARTTAFMAGEVDAGVLDGEVFCENTFQDCVRRVPEGFLKT FT AIAVHSIYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGR FT IKFFFANDPNAGYSHDLKDYLKYVEKTYVDIEDGVFAIELMQMRGDTMFFKITDVTAAM FT YHMKYRGMKRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKN FT KEKDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENS FT IISYFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAEFDLTTFDICD FT PVLYVEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAVKMAQKVTGTVTEC FT EKDLGPLVQPIKEILVQLVMPNLVRALCRPRSPTSPLDLKSIPGSTPSRSSSDSEQSMT FT EEASCTIAGSVPTWEIATRKDLTFQRIDEDMSRRTGMPPRPKVTSSYNMNARAEFLYYQ FT LCSVICERAQILSVIEDFRQNLIFSDKVAVPLNARFYSFKSLRPGWVFKTPSHSEVGHS FT YAVHFDFKTVGTDLEESLAFCRMVPISWDKSGTYIATTPHFPERHGYYVICDNTKLCNN FT WLIYNKLVDVYALVTDRPLRFELIDGVPGCGKSTMILNSCDIRREVVVGEGRNATDDLR FT ERFKRKKHLNSKTANHRVRTLDSLLLAEGSCVPQADRFHFDEALKVHYGAIMFCADKLG FT ASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYLSAKEFY FT KVKGIPQKVITSNSVKRSLYARGETTPERFVSLLDVPVRKDTHYLTFLQAEKESLMSHL FT IPKGVKKESISTIHEAQGGTYENVILVRLQRTPNEIYPGGPRSAPYIVVGTSRHTKTFT FT YCSVTDDKLLLDIADVGGIAHTPIRTFESHIV" XX SQ Sequence 3790 BP; 1112 A; 710 C; 891 G; 1077 T; 0 other; gtatgtaagt tgcctttggg tgtaaaattt cttgcatgca cataatcgta atcgattctt 60 cttgatctct aaacaacact ttcccgttag catggctagc gatgagattg tccgcaatct 120 gatctcccgt gaggaggtga tgggtaattt gattagcaca gcttctagct cagtaaggtc 180 acccttacat gacgtactgt gctcgcacgt aaggaccatc gtcgattccg tggataagaa 240 agcggtcagt cgcaagcatg ttgatgtacg gcgcaacatc tcctctgagg aattgcagat 300 gttgataaat gcatatcctg aatatgccgt ttcatcctca gcttgtgaat ctggtactca 360 tagcatggcg gcttgttttc gatttctgga gacagaatat ctcttagata tggttccaat 420 gaaagagact tttgtttatg acattggtgg caactggttt tctcatatga agtttcgtgc 480 tgatagagaa attcattgtt gctgtccgat cttatctatg agagattctg aaagactgga 540 aacacgcatg atggcaatgc aaaaatatat gcgtggatcg aaagacaaac cgttacgctt 600 gttaagccgt tatcaaaata tcctgcgtga acaagcggcg agaacaactg cctttatggc 660 aggtgaggtg gatgcgggtg ttctcgatgg agaggtgttt tgtgagaaca cttttcaaga 720 ctgtgtgaga cgagtgcccg aaggtttttt gaagacagct atagcagttc atagcatcta 780 cgatatcaaa gtggaggaat ttgcgtctgc attgaaaaga aaaggtataa cacaggctta 840 tgggtgtttc ctgtttcctc ctgctgtatt gataggtcag aaggaaggca ttttaccttc 900 cgtggacggt cattacttgg tggagaatgg caggattaag ttcttctttg cgaatgatcc 960 gaatgccggt tactctcatg accttaagga ttatctgaag tatgtggaaa agacctatgt 1020 ggatatagag gatggagtgt ttgccattga gctgatgcaa atgcgaggtg ataccatgtt 1080 ctttaagatc acggatgtca ccgcagcaat gtatcatatg aaatacagag gtatgaaacg 1140 cgatgaaaca ttcaaatgca ttccgttgct aaagaattca tctgttgtcg tacctctatt 1200 ttcgtgggac aaccgttctt taaagatcac aagtggttta ctaccacgaa ctttggtcga 1260 gcagggtgcg gcgtttatta tgaaaaacaa ggagaaggac ttgaacgttg ctgtgttgaa 1320 gaactatctt tccgctgtga acaactcata cattttcaac ggttcccagg ttagagatgg 1380 cgtgaaaatt gccccggatt taatctccaa attggcagtg actctgtacc tgagagaaaa 1440 agtctatcga caaagagaaa attcaatcat aagttatttc gagcaagaaa tgcttcacga 1500 tcccaacttg aaagccatgt ttggagactt tctgtggttt gttccaaata ctctctcgag 1560 tgtctggaag aacatgcgaa aatcactgat ggaatggttt ggctacgcag aatttgactt 1620 gactactttt gatatttgcg atcccgttct ctatgtagag atagtggatc ggtataagat 1680 cattcaaaaa gggcgaattc cacttggtga attctttgat tgtcatgaag aatgcgagaa 1740 ttacgaactg cgtgagaagg agaaaaatga cctagcggtg aaaatggccc agaaggtaac 1800 agggacggtg accgaatgcg agaaggacct gggacctctt gttcaaccga taaaagagat 1860 attggttcaa cttgtgatgc ccaatttggt cagagcgctg tgtagacctc gtagcccaac 1920 gtctcctttg gacttaaaaa gtatcccagg gtcaactcca tcacgctcaa gttcagattc 1980 tgaacaatct atgactgaag aagcgagctg caccattgcg ggtagcgtac caacatggga 2040 aattgcgact agaaaagatc taacctttca gcgaattgat gaagatatgt ctcgacgaac 2100 tggtatgcct ccaagaccaa aagtaacttc tagttacaac atgaatgcca gagctgagtt 2160 tctctactat caactgtgta gcgtgatttg tgaaagggct cagattttga gtgtcatcga 2220 agactttcgt cagaatttga tattctcaga taaagtggcc gttccattga acgctagatt 2280 ctacagtttt aagtcattga gacccggatg ggtgttcaaa actccatcgc atagtgaagt 2340 aggccacagt tatgcagtac attttgactt caagacagtt ggaaccgatt tggaagagag 2400 cctagctttt tgccgaatgg taccgatttc atgggataaa agcggcacat acatcgcgac 2460 aactcctcat tttcccgaga gacatggtta ctacgtgatt tgtgacaaca ctaaattgtg 2520 taacaattgg cttatttaca ataagttagt tgatgtctac gcactagtga ctgatagacc 2580 tctgagattc gagttgattg acggagttcc tggctgcgga aagtcaacca tgattttaaa 2640 cagctgtgat attcgacgcg aagttgttgt tggtgaagga cggaatgcaa ctgatgactt 2700 aagggagagg ttcaagcgta agaaacattt gaatagtaag actgctaatc acagagttcg 2760 aacgcttgat agcttattac ttgctgaagg atcttgtgta ccgcaagctg ataggtttca 2820 ttttgatgaa gctctaaaag ttcattacgg tgccataatg ttctgtgctg ataagcttgg 2880 tgcctcagaa attctcgctc agggagatag ggctcaattg ccaatgatct gtcgtgtaga 2940 aggtattgaa cttcaatttc aatctcctga ttacacgaag acgatcataa atcctaagct 3000 acggtcatac cgtatccctg gagatgttgc cttctatttg agtgctaagg aattttacaa 3060 agttaaagga atacctcaaa aggttataac ttctaacagt gtgaaacgtt ccttgtacgc 3120 tagaggcgag acgactccgg aaagattcgt gagtttgctt gatgttccgg tgagaaaaga 3180 cacccactat ctaaccttct tacaagctga gaaggaaagt ttgatgagtc atttgattcc 3240 aaagggtgtg aagaaagagt ctatttcaac gattcatgag gcgcagggtg gtacctatga 3300 aaatgtgatt ctggtccgtt tgcaacggac gcccaatgaa atttatccgg gtggacctag 3360 gtccgcccct tacattgtgg ttgggacttc aaggcataca aaaactttca cttattgtag 3420 tgttacggac gataagttgc ttttagatat cgccgacgtc ggtggtattg cacatacacc 3480 tattcgtact tttgaatctc atatagttta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3540 aaaaaaaaaa atgtttgatc agatcattca aatctgatgg tgcccatcaa ccatatgatg 3600 ggagtgttta caagtccact ataatcgaac ttgaaaaacc ttgcctgaat tggaaaccat 3660 gaatcttaac ggattctgga gagaaaattt aggaattggt atgtaagcta caacttccgg 3720 tagctgcgtc acactttaag agtgtgcata ctgagccgaa gctcagcttc ggtcccccaa 3780 gggaagacca 3790 //