ID U34586; SV 1; linear; genomic RNA; STD; VRL; 6609 BP. XX AC U34586; XX DT 10-JUL-1996 (Rel. 48, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 4) XX DE Odontoglossum ringspot virus strain Singapore 1, complete genome. XX KW . XX OS Odontoglossum ringspot virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6609 RX DOI; 10.1016/0378-1119(96)00046-7. RX PUBMED; 8666266. RA Chng C.G., Wong S.M., Mahtani P.H., Loh C.S., Goh C.J., Kao M.C., RA Chung M.C., Watanabe Y.; RT "The complete sequence of a Singapore isolate of odontoglossum ringspot RT virus and comparison with other tobamoviruses"; RL Gene 171(2):155-161(1996). XX RN [2] RP 1-6609 RA Chng C.G., Wong S.-M.; RT ; RL Submitted (22-AUG-1995) to the INSDC. RL Sek-Man Wong, Botany, NUS, Kent Ridge, Singapore, 0511, Singapore XX DR MD5; 4f05d6b7aeee36175083b6364b0e80da. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01083; UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6609 FT /organism="Odontoglossum ringspot virus" FT /strain="Singapore 1" FT /mol_type="genomic RNA" FT /db_xref="taxon:12238" FT CDS 63..4901 FT /codon_start=1 FT /transl_except=(pos:3399..3401,aa:OTHER) FT /product="183 kDa readthrough protein" FT /db_xref="GOA:Q84133" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q84133" FT /protein_id="AAC55012.2" FT /translation="MAHFQQTMNNKVIEAGMGRNSLINDLAQRRVYDNAVEELNHRSRR FT PRVNFSKVISQEQIIQATNAYPEFEITFYNTQLAVHSMAGGLRALELEYLMMQIPFGSI FT TYDIGGNFSAHLYKGRDYVHCCMPNLDIRDVARHINQQDTVSTYLARLERSKRGLPVFQ FT QSAFNKYMNDPDAVCCDKRFQDCSYSAGLPGKTYAVGLHSIYDIPADEFGAALLRKDVH FT ICYAAFHFSENLLLETTSAPLDEIGATFYKSGDRLSFFFQNESTLNYEHSYKNVIKYVC FT KTFFPASNRFVYHKEFMCTRVNTWFCKFTKVDTYFLFRGVYTRGEDSEQFYTAMDEAWE FT YKKTLAMLNSERTIFRDRAAVNFWFPKVKDMVIVPLFDGSVTSGKMKRSEVMVNKDFVY FT TVLNHIRTYQDKALTYKNVLSFVESIRSRVIINGVTARSEWDVDKSVLQALSMTFLLQT FT KLAEAKDQVVLKKFQKFDDTVTNLFWKQISDAVGDLFPSIKERLISGGFVKVAEQSLQI FT KTPDEYITPADKLVMEYQATEELQHLDISKPLERAEKYYNALSELSVLKECDEFDITQF FT KNLCEEKDIAPDVVAKVIVPIMKNELTLPFKNPTPEALSDALSPLPKDLDMRFCLLKLS FT TCAPFPSVKTLDSGLLPKQSYGDERQFESQSVVSVSDFHLKSVESVKMKSMSSAVYTGP FT LKVQQMKNYMDYLSASISATVSNLCKVLKDVYGADPESAEKSGVYDVVKGKWLLKPKDK FT CHAWGVAELNNGEKVIVLLEWADGFPICGDWRRVAVSSDSPIYSDMGKLQTLLSCLKDG FT EPVLRMPKVTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRAT FT RDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVFGDAEQIPFI FT NRVANFPYPKHFRYTCLYHREVRRLSLRCPADVTHFMNSKYDGKVLCTNDVIRSVDAEV FT VRGKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSV FT VRLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVWSDLSKVSDFILDMYKV FT DAGILXQLQVGSIFKGENLFVPCPKSGYISDMQTYYDTLVPGNSTILNEYDAVTMNLRE FT NNLNVKDCTIDFSKSVSVPRQQQEFFTPAHRTAAERPRSAGLLENLVAMIKRNFNSPDL FT TGILDIEDTAELVVNKFWDAYIIDELSGGNVTPMTSDAFHRWMAKQEKSTIGQLADFDF FT VDLPAIDQYKHMIKAQPKQKLGLSPQDEYAALQTIVYHSKQINAIFGPLFSELTRQLLE FT RIDSSKFLFYTRKTPEQIEAFFSDLDSTVPMEVLELDISKYDKSQNEFHCAVEYLIWEK FT LGLNGFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIP FT MDKVIKAAFCGDDSILYIPKGLDLPDIQSGANLMWNFEAKLYRKRYGYFCGRYIIHHDR FT GAIVYYDPLKLISKLGCKHIKSLDHLEEFRISLCDVSSSLNNCAYFGQLNDAIAEVHKT FT AVNGSFAFCSIVKYLSDKNLFRTLFNNGSSTKG" FT CDS 63..3401 FT /codon_start=1 FT /product="126 kDa replicase" FT /db_xref="GOA:Q84134" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q84134" FT /protein_id="AAC55013.1" FT /translation="MAHFQQTMNNKVIEAGMGRNSLINDLAQRRVYDNAVEELNHRSRR FT PRVNFSKVISQEQIIQATNAYPEFEITFYNTQLAVHSMAGGLRALELEYLMMQIPFGSI FT TYDIGGNFSAHLYKGRDYVHCCMPNLDIRDVARHINQQDTVSTYLARLERSKRGLPVFQ FT QSAFNKYMNDPDAVCCDKRFQDCSYSAGLPGKTYAVGLHSIYDIPADEFGAALLRKDVH FT ICYAAFHFSENLLLETTSAPLDEIGATFYKSGDRLSFFFQNESTLNYEHSYKNVIKYVC FT KTFFPASNRFVYHKEFMCTRVNTWFCKFTKVDTYFLFRGVYTRGEDSEQFYTAMDEAWE FT YKKTLAMLNSERTIFRDRAAVNFWFPKVKDMVIVPLFDGSVTSGKMKRSEVMVNKDFVY FT TVLNHIRTYQDKALTYKNVLSFVESIRSRVIINGVTARSEWDVDKSVLQALSMTFLLQT FT KLAEAKDQVVLKKFQKFDDTVTNLFWKQISDAVGDLFPSIKERLISGGFVKVAEQSLQI FT KTPDEYITPADKLVMEYQATEELQHLDISKPLERAEKYYNALSELSVLKECDEFDITQF FT KNLCEEKDIAPDVVAKVIVPIMKNELTLPFKNPTPEALSDALSPLPKDLDMRFCLLKLS FT TCAPFPSVKTLDSGLLPKQSYGDERQFESQSVVSVSDFHLKSVESVKMKSMSSAVYTGP FT LKVQQMKNYMDYLSASISATVSNLCKVLKDVYGADPESAEKSGVYDVVKGKWLLKPKDK FT CHAWGVAELNNGEKVIVLLEWADGFPICGDWRRVAVSSDSPIYSDMGKLQTLLSCLKDG FT EPVLRMPKVTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRAT FT RDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVFGDAEQIPFI FT NRVANFPYPKHFRYTCLYHREVRRLSLRCPADVTHFMNSKYDGKVLCTNDVIRSVDAEV FT VRGKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSV FT VRLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVWSDLSKVSDFILDMYKV FT DAGIL" FT CDS 4807..5718 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:Q84135" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/Swiss-Prot:Q84135" FT /protein_id="AAC55014.1" FT /translation="MGRLRFVVLLSIFPIKTFSEPCSTMALVLRDSIKISEFINLSASE FT KLLPSALTAVKSVRISKVDKIISYENDTLSDIDLLKGVKLVENGYVCLAGLVVTGEWNL FT PDNCKGGVSICLVDKRMKRANEATLGSYHTSACKKRFTFKIIPNYSVTTADALKGIWQV FT MINIRGVEMEKGFCPLSLEFVSICVVYLNNIKLGLREKILNVTEGGPTELTEAVVDEFV FT EKVPMAARLKSFRSVNKKKPSDSSKFVNGKSRLNSRNKLNYENGDSDVGISVVDDIVVG FT NGVSDIRIDDDCESFDAQSDPY" FT CDS 5721..6197 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q84136" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/Swiss-Prot:Q84136" FT /protein_id="AAC55015.1" FT /translation="MSYTITDPSKLAYLSSAWADPNSLINLCTNSLGNQFQTQQARTTV FT QQQFADVWQPVPTLTSRFPAGAGYFRVYRYDPILDPLITFLMGTFDTRNRIIEVENPQN FT PTTTETLDATRRVDDATVAIRSAINNLLNELVRGTGMYNQVSFETMSGLTWTSS" XX SQ Sequence 6609 BP; 1958 A; 1184 C; 1439 G; 2028 T; 0 other; gtattgttcg attactacaa ttacaacaaa caattacaac aaaattcaca attcacatca 60 acatggcaca cttccaacaa acaatgaaca acaaagttat tgaggctggt atgggcagaa 120 acagcctcat taacgatttg gctcagagac gtgtttacga taacgctgtc gaagagttaa 180 accaccgttc tagacgccca agggttaact tttccaaggt catttctcag gaacagatta 240 ttcaagctac taatgcgtac cctgagtttg aaatcacctt ttacaacact caactcgctg 300 tccactcgat ggcgggaggt cttcgagcac tcgagctcga gtatcttatg atgcaaatcc 360 catttggttc tattacgtat gacatcgggg gaaacttttc agcgcactta tataaaggac 420 gagattacgt ccattgctgt atgcctaatc ttgacattcg cgatgtggct cgtcacatca 480 atcaacaaga tactgtttct acttatctgg ctaggctcga gagaagcaag aggggtcttc 540 cggtttttca gcaatcagct tttaataaat atatgaatga ccccgatgct gtgtgctgcg 600 ataaaaggtt tcaagactgt tcttactccg cgggtcttcc gggaaaaaca tacgctgtgg 660 gccttcatag tatctatgat attccagcgg atgagttcgg agctgcctta ttacgaaagg 720 atgttcacat atgttatgct gcttttcatt ttagtgagaa tctgcttctt gagactacgt 780 ctgctccgct cgatgagatt ggagcgacgt tttacaagtc aggggatagg ttatcctttt 840 tctttcaaaa tgagagcaca ttgaattatg aacattctta taaaaacgta attaaatatg 900 tttgcaagac ttttttcccc gcttcaaata ggtttgtcta ccataaggaa tttatgtgca 960 ccagagttaa cacatggttt tgtaagttca ccaaggtaga tacttatttc cttttccgag 1020 gggtgtatac taggggagaa gattctgaac aattttacac tgctatggat gaagcatggg 1080 agtataagaa aactttggca atgcttaata gcgaaaggac gatctttcgc gatcgcgctg 1140 cggttaactt ttggtttcct aaagttaagg atatggttat tgtgccgctt tttgatggtt 1200 ccgtcacttc aggaaagatg aaaagaagtg aagtcatggt taacaaggat tttgtttaca 1260 ccgttttaaa tcacatccgt acctatcaag acaaagcctt gacgtataaa aacgttcttt 1320 cctttgtcga gtccattagg tctcgtgtga ttattaatgg tgtgactgca agatctgagt 1380 gggatgtaga caagtctgtg ttacaggcgt tatctatgac ttttctttta cagacgaagt 1440 tggctgaagc aaaagatcaa gtcgtactta aaaaatttca aaaatttgac gatacagtta 1500 ctaatctttt ctggaaacag attagtgatg ctgtaggcga tctcttcccg tcgattaagg 1560 aaaggctcat tagcggtggg tttgtaaaag ttgctgagca atctttacaa attaaaacgc 1620 ctgatgagta tatcaccccc gcagataaac tggttatgga atatcaagca actgaagagc 1680 ttcaacatct agacattagt aagcctcttg agagagccga gaaatattat aatgctttat 1740 cggaactatc ggttctcaag gaatgtgacg agtttgatat aacgcaattc aagaatttat 1800 gtgaagaaaa ggacattgct ccagacgtcg tggcgaaagt gatcgtaccc atcatgaaga 1860 acgaactcac actgcctttt aaaaatccaa cgcctgaagc attatcggat gctctttcac 1920 cgttacccaa agacttggat atgagatttt gtctgcttaa attaagtacg tgtgcaccct 1980 ttccaagcgt taaaacttta gatagtggtt tattaccaaa gcaaagctac ggtgacgaaa 2040 gacaatttga gagtcaatct gtcgtgtctg tatctgattt tcatcttaag agcgtcgagt 2100 cagtaaaaat gaaaagcatg tcgtcagcgg tctacacagg tcccctcaaa gttcaacaga 2160 tgaagaacta tatggattac ctgtccgcat cgatttcggc tactgtttca aatttatgca 2220 aggtgctaaa ggatgtctat ggtgccgacc cagagtctgc agaaaagtct ggagtctacg 2280 atgtagtgaa aggcaaatgg ttattaaaac caaaggataa atgtcacgct tggggtgttg 2340 ccgaacttaa caatggcgag aaagtcatcg tattactcga atgggctgat ggattcccta 2400 tttgtggtga ttggcgacga gtggccgtct cttcagattc ccctatttat tcagatatgg 2460 gaaaacttca gacgttgtta agctgcttaa aggacggtga gcccgtactt cggatgccga 2520 aagtcacgtt agtagatggc gttcctggtt gtggaaaaac aaaggaaatt cttgaaactg 2580 tgaattttga tgaggactta atacttgttc ctggtaaaga agcttgtaaa atgattatca 2640 agagagctaa taagtctgga catgtaagag cgacaaggga taatgtaaga actgtggatt 2700 cgttcttaat gcatttgaag cctaagactt ataacaaact gtttatcgat gaaggtttga 2760 tgttacatac tggttgtgtc aactttctgg tagcattgtc ccattgtcgt gaagcgatgg 2820 tttttggtga tgctgaacaa attcccttta taaacagagt ggcaaatttc ccttatccga 2880 aacattttcg ctacacttgt ttatatcata gggaggttag gaggttatca cttagatgcc 2940 cagcagatgt tacgcatttt atgaactcca aatatgacgg gaaagtttta tgtacgaatg 3000 atgtgattcg ctcagttgat gctgaagtgg ttagagggaa aggggttttt aacccgaaaa 3060 gcaaaccgct taaagggaaa attatcacct tcactcaaag tgacaaagcc gaactgaagg 3120 agcgtggtta tgaagaagtt tcaacttttg gtgaaattaa caccgtacac gaaatccaag 3180 gtgagacctt tgaagacgta tcggttgttc gtttgacacc aactccattg gagcttatat 3240 caaagagttc accgcacgtt cttgttgcat tgacaagaca tactaaaagc tttaaatatt 3300 actctgtggt tctcgatcct ctcgtcaaag tttggtctga tttaagcaag gtgtctgact 3360 ttatactgga tatgtataag gtcgatgccg ggatcttata gcaattacag gtagggagta 3420 tcttcaaagg cgaaaatcta ttcgtaccat gtcctaaatc tggttatatt tctgatatgc 3480 aaacttatta tgacactttg gtacctggaa acagcactat tttaaacgag tatgatgcag 3540 tgactatgaa tcttcgtgaa aataatctta atgtcaagga ttgcacgata gatttttcta 3600 aatctgttag tgtcccgaga caacaacaag agtttttcac accagctcat cgaactgctg 3660 ctgaacgtcc acgtagtgct ggactccttg aaaaccttgt ggcaatgata aaaagaaatt 3720 ttaactctcc agatttaacg ggtatattag atattgaaga tactgccgaa cttgtagtta 3780 ataagttttg ggatgcttac attattgacg aactttctgg tggaaatgtt acaccgatga 3840 cttcagatgc ctttcacagg tggatggcta agcaggagaa aagtactatt ggtcaattag 3900 ctgattttga ctttgttgat ttacccgcta ttgatcaata caaacatatg attaaggcgc 3960 aacctaaaca gaagcttggt ctcagtcctc aagatgagta tgctgcactt cagactattg 4020 tttatcactc aaagcagata aatgcaattt tcggtcctct tttttccgaa ttaactagac 4080 agcttttaga gaggatagac agtagcaaat ttttgtttta cacccggaaa acgcccgaac 4140 agattgaagc gtttttctca gatttggatt cgacggtgcc aatggaagtt ctagagttag 4200 acatttcaaa gtatgacaaa tcccagaacg aattccattg tgctgttgag tacttgattt 4260 gggagaaact tggtcttaat ggctttctcg aagaagtttg gaaacaggga cataggaaga 4320 catccttgaa ggattacacc gcaggaataa agacttgttt atggtatcaa aggaaaagtg 4380 gagatgtaac tacttttatt ggcaatacag tcattatagc tgcttgtctt gcgtcgatga 4440 tacctatgga taaggtaatt aaagctgcgt tttgtggaga tgatagtatt ctatacattc 4500 caaagggact tgatcttcct gatatccaat ctggagcgaa tttgatgtgg aacttcgagg 4560 caaaattata tcgtaagcgt tacggatatt tttgcgggag gtatattatt catcatgaca 4620 gaggtgccat tgtgtattac gaccctctta aattaatttc taagttaggt tgtaaacaca 4680 tcaaatcttt ggatcatttg gaagaattta gaatctcact gtgtgacgta agctcttctt 4740 taaataattg tgcgtatttt ggtcagttga atgatgcaat tgctgaggtc cacaagaccg 4800 cagtaaatgg gtcgtttgcg ttttgtagta ttgttaagta tctttccgat aaaaaccttt 4860 tcagaacctt gttcaacaat ggctctagta ctaagggata gcatcaaaat ctctgaattt 4920 attaatttat cagcctctga aaaactacta ccgtcagctc taacggctgt caagtcggta 4980 cgtatttcaa aggttgataa aattataagt tacgagaatg atactttgtc tgatattgat 5040 ttgcttaaag gtgtgaagtt agtagagaat gggtatgtgt gccttgccgg cctcgtcgtc 5100 actggtgaat ggaatttacc ggacaattgc aaaggtggtg tgagtatctg tcttgtagac 5160 aaacgcatga aaagagctaa tgaagcaaca cttggctctt atcatacatc tgcttgcaag 5220 aagagattta cctttaaaat tatcccgaat tacagtgtca ccactgccga cgctcttaaa 5280 ggaatatggc aagttatgat aaatattaga ggtgtggaaa tggaaaaggg tttttgccca 5340 ttatctttgg agtttgtttc tatttgcgtg gtgtatttaa ataatataaa actcggactg 5400 agagagaaga ttttgaacgt aacagaagga gggcccaccg aacttactga agcagttgtt 5460 gatgagttcg tggagaaagt tcctatggct gctaggctca agtcttttcg ctccgtcaac 5520 aaaaagaaac ctagtgacag ttctaagttt gttaatggaa aatccagact taatagtcgt 5580 aataaattaa attatgaaaa tggtgatagt gatgttggta ttagtgttgt agatgatatt 5640 gtggtcggta atggtgttag tgatattcgt attgatgatg attgtgagtc atttgacgca 5700 caatctgatc cgtattgaat atgtcttaca ctattacaga cccgtctaag ctggcttatt 5760 taagctcggc ttgggctgac cccaattcac taatcaacct ttgtaccaat tctctgggta 5820 atcagttcca aacacaacaa gctcgaacaa ctgttcaaca gcagtttgct gatgtttggc 5880 agccggttcc tactttgacc agtaggttcc ctgcaggcgc tggttacttc agagtttatc 5940 gctatgatcc tatattagat cctttaataa ctttcttaat gggtactttt gatactcgta 6000 atagaataat cgaggtggaa aatccgcaga atccgacaac tacggaaaca ttagatgcaa 6060 ctcgtagagt tgatgatgca actgtagcaa taagatctgc aataaataat ctattaaatg 6120 agttagttag gggaactggt atgtacaatc aagtctcatt tgagacgatg tctggactta 6180 cttggacctc ttcctaatca tatttaggaa aataacgttg atagtgttga actatccgtg 6240 gtgcatacga taatgcatag tggttatccc tccacttaaa tcgaagggtt tttcactgcg 6300 gatatgtagg tttcctcggt gaatataaaa cttatatccc gttgtgtaca cgatagtaca 6360 tagtgtttat ccctccactt gaatcgaagg gttttgtgtc agacgcgtgt aaggagtggt 6420 caaccttacg acacatttaa ataatgcgtc cgtggtgcat acgataatgc atagtgtttg 6480 tccctccact taaatcgaag ggttgtgtat atggatcatg cggataaagt tatactggtg 6540 cagtataacc cgttatacac ataaaattat gagggattcg aattccccct tacctcgggt 6600 agaggccca 6609 //