ID U31286; SV 1; linear; genomic RNA; STD; VRL; 4275 BP. XX AC U31286; XX DT 03-NOV-1995 (Rel. 45, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Lucerne transient streak virus complete genome. XX KW . XX OS Lucerne transient streak virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4275 RA Jeffries A.C., Rathjen J.P., Symons R.H.; RT ; RL Submitted (10-JUL-1995) to the INSDC. RL John P. Rathjen, Plant Science, Waite Institute, University of Adelaide, RL Glen Osmond, SA 5064, Australia XX DR MD5; b106c8bbc9982fa51039b73392fcc569. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC3791421; 23830075. XX FH Key Location/Qualifiers FH FT source 1..4275 FT /organism="Lucerne transient streak virus" FT /strain="New Zealand isolate" FT /mol_type="genomic RNA" FT /db_xref="taxon:12470" FT CDS 78..440 FT /codon_start=1 FT /product="unknown" FT /note="ORF 1a" FT /db_xref="UniProtKB/TrEMBL:Q83091" FT /protein_id="AAA79986.1" FT /translation="MPSVIVECYETDSHRDIPLFSRKIWFDNVDELTSDYVRVYRAVRD FT YSKVDYIEVELRCNFCHYYNSRGQIVQRYLGCKDVEIRNISLPDNDPYTYTVYSVDCAI FT CRKIPTESEDESDSSF" FT CDS 534..725 FT /codon_start=1 FT /product="unknown" FT /note="ORF 1b" FT /db_xref="GOA:Q83092" FT /db_xref="UniProtKB/TrEMBL:Q83092" FT /protein_id="AAA79987.1" FT /translation="MTLKLWEALKVLVIVSSSSIAVSLLLTSQVAAGGLDPMLQPPLAL FT CVISMLVLIVRHAGRTCC" FT CDS 716..3475 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF 2; putative polyprotein encoding genome-linked FT viral protein (VPg), serine protease, and RNA-dependent RNA FT polymerase" FT /db_xref="GOA:Q83093" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q83093" FT /protein_id="AAA79988.1" FT /translation="MLLNSVEVRDETPPGMFINLVGEPKLIPEKGIVMDGVGEDGKVCK FT VIVNPQWWRFLPGSAISKNGEDEAAVLDSVYSSVLTGTEPASLVLLKSGSQTVGFGARV FT SYEGCSDYLLTAHHVIEPHEKLDLCKRGKVIPDLDLTTTYDCEDKFAEFAMIKVPSNYW FT SRLGVGVAKLSALSKKSTVSLYGGTSSTGLTCSSGFAYKGKSGYAIIHEASTTKGWSGT FT PLYVGNNIVGVHTGCGKAGETNRGTNVRVLLDLSSGYESDFSEISYGEIDLDNFRLRPN FT RQEYLPVTIKGKGRYLLGDTDFVAMTEARVKRVDDWEALKDAEGPGGVKWSDWADEETS FT WIGRKMNNIYKAGVETIDLWKGTDEPVESETTSQLLRHLNCQGAGTPEGVAPPSSTLQS FT TDGNNPSLSPHGVCLFPKLEDRIVNLEKLVEKLLETLSSRQVKSSQSSNSTAGLSEVVG FT QKEDPSSSKPDGFDRPAPPPTSPSQSESSPQNTQPQQSTESSGGQSGVKKKSQRRRGKS FT ERQKSTQKPPQVPLSVLGQSNAEVLSRHGDLVYIAVAERLIALSEADLEAHPKPSDLVR FT LGLCDPVRLFVKNEPHPANKVREGRFRLISSVSLVDQLVERLLFGPQNKAEIALWQSVP FT SKPGMGLSQKWQFEALWKDLQIKHASAPAAEADISGFDWSVQKWELEADVCMRIERGNF FT PARMRKAALNRFKCFANAVFQLSNGELIEQGLPGLMKSGSYCTSSTNSRIRCLMAEIIQ FT APWCIAMGDDSVEGYVEGARELYEELGHTCKDYIPCAAEGEILKEVNFCSHSIAADRCY FT LQSWAKTLFRYLEHPDDFEELAVELQGCQWPRIYKYLRRIGRVSDKIPEPREENGREDE FT KSKQKEEEEQQRTEEDYGTQQAASYCSEGHDPSRYFGGGEEVFPCNPL" FT CDS 1951..2457 FT /codon_start=1 FT /product="unknown" FT /note="ORF 3" FT /db_xref="UniProtKB/TrEMBL:Q83094" FT /protein_id="AAA79989.1" FT /translation="MPLSEVGRSNCKFREASGKTTGDAVIAAGEIFPELKQYSWPKRGS FT GAERGSLLFQAGRFRPTSPPANLAESVRKLASKYPATTVYRVLRGTEWSKEEIAKEARK FT IGETEVNPKASPGPALRPGSKQRRSLEQARRSCVHSSSRKANSAVRGRLGSPSEAQRFS FT SFGSL" FT CDS 3312..4148 FT /codon_start=1 FT /product="viral coat protein" FT /note="ORF 4" FT /db_xref="GOA:Q83095" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q83095" FT /protein_id="AAA79990.1" FT /translation="MVAKTRRANRKKKRNNNAQRRTTEPNRQLATARRVTIPAATSVVV FT RKSSPVIRSDRKGIQVCNTEFIRSFDLNASFTVGSLPCTPGTMPWLSRMAASWGRWKWN FT SLRFTYIPAAPSNTQGTVAMGFLYDSLDSLPSNLASMSSLDGFTTGAVWSGCEGSAYLA FT KPSMRDIPGAISTCLDIDPDWRQKRWRYITALELAALSKPDFNIYAPARLTIAAANSSI FT NIASVGTLYATYEVELFDPISAELNLPTPAVVTQAKEDATKHTSNTEEEDGNAKPH" XX SQ Sequence 4275 BP; 1141 A; 960 C; 1133 G; 1041 T; 0 other; acaaataatg cgaagaaaga actgaagttt aatcaatttg tgtattcgta cttttgtgct 60 taaacttcca atcctgtatg ccaagcgtaa tagttgagtg ttacgagacc gactcccatc 120 gagacattcc cttgttctcc cgaaagattt ggttcgacaa cgttgacgaa ttaacgtccg 180 actacgtccg agtctacagg gcagttagag attactccaa ggttgattac atcgaggttg 240 agttgcgttg taacttttgt cactattaca acagtagggg gcagatcgta cagcgatatc 300 ttggttgtaa agacgtggag atcagaaata tctccttacc tgacaacgac ccatacacct 360 acacggtata ttcagttgat tgcgcgattt gccggaagat tccaacagag tctgaggacg 420 aatcggacag ttctttctaa ccctggaaac ccgaactaag cgtagaatta cacgctctcg 480 cagtttcatt aactataagt tgtttaactg ttttacaagt actacagtac aagatgactt 540 tgaaactctg ggaagctctc aaggttcttg taatagtgtc gagcagctcg atagctgtga 600 gtctactact tacatcccag gtagcagcag gaggtttaga cccgatgttg caacccccat 660 tggctctgtg cgtcatatcg atgctggtgc tgatcgtgcg gcacgctggc agaacatgct 720 gctaaactca gtagaggtta gggatgaaac tccccccggc atgttcatca atcttgtagg 780 tgaacctaag ttgatccccg aaaagggaat agttatggat ggcgttggtg aggacggcaa 840 ggtatgtaaa gtaatagtca atcctcaatg gtggcgtttt cttcccggtt ctgcgatatc 900 taagaatggg gaagacgaag ctgcggtttt ggatagtgta tattctagcg tccttactgg 960 cacagagccg gcttctttgg ttttgcttaa atcaggcagc caaactgtcg gttttggagc 1020 gcgtgtaagt tatgagggtt gctcagatta tctattgacg gcacaccatg tgatcgagcc 1080 acatgagaag ttggacctgt gcaaacgggg gaaagtcatt ccagatttgg atttgaccac 1140 cacttacgat tgtgaggata aattcgcaga atttgctatg atcaaggtgc cgagcaacta 1200 ctggtctaga ttgggtgtgg gggttgcaaa actctctgcc cttagcaaga agtcaacagt 1260 ttcactatat ggtggtacga gctccactgg tctcacttgc tcttcggggt ttgcttataa 1320 aggcaagtcc ggttatgcca tcattcacga ggcatctacc accaagggct ggagtgggac 1380 ccctttatat gttggcaaca acattgttgg agttcacact ggatgtggga aggctggtga 1440 aaccaaccgc ggaactaacg tccgggtttt gcttgatctt agctctggat atgagtctga 1500 tttttccgag atctcctatg gagagatcga tttagataat tttagactca gacctaaccg 1560 ccaagagtac ctgccagtga ccatcaaggg gaaaggaaga tatttgttag gtgacactga 1620 cttcgttgcc atgacagagg ccagagtcaa aagagtagat gactgggaag ccttgaaaga 1680 tgctgaaggg cccggagggg ttaagtggtc tgattgggct gatgaggaaa ccagctggat 1740 aggaaggaaa atgaataaca tctacaaagc tggtgttgag actatagact tgtggaaagg 1800 cactgacgaa cccgttgagt ctgagactac atcgcaactg ttgaggcatt taaactgcca 1860 aggggcgggc acaccggaag gtgttgcacc gccctcatca accttgcaga gtaccgatgg 1920 gaacaaccca tccctatctc ctcacggggt atgcctcttt ccgaagttgg aagatcgaat 1980 tgtaaattta gagaagctag tggaaaaact actggagacg ctgtcatcgc ggcaggtgaa 2040 atcttcccag agctcaaaca gtacagctgg cctaagcgag gtagtggggc agaaagagga 2100 tccctcctct tccaagccgg acggtttcga ccgaccagcc cccccgccaa cctcgccgag 2160 tcagtcagaa agctcgcctc aaaataccca gccacaacag tctacagagt cctccggggg 2220 acagagtgga gtaaagaaga aatcgcaaag gaggcgagga aaatcggaga gacagaagtc 2280 aacccaaaag cctccccagg tcccgctctc cgtcctgggt caaagcaacg ccgaagtctt 2340 gagcaggcac ggcgatcttg tgtacatagc agtagcagaa aggctaatag cgctgtccga 2400 ggccgacttg gaagcccatc cgaagcccag cgatttagtt cgtttgggtc tttgtgatcc 2460 tgtgagattg tttgtaaaga atgagcccca ccctgccaac aaggtgcggg aagggcgctt 2520 tagactaatc tcatcggtat cgctggttga ccaactagtt gaaaggctgc tattcgggcc 2580 ccaaaacaag gcagagattg ccttgtggca gtcggtgcct tcaaaacctg gtatgggatt 2640 gtcacagaag tggcagttcg aggcgctgtg gaaggatttg caaatcaaac acgccagtgc 2700 ccccgccgct gaggcggata tatcgggttt tgattggtct gtgcagaaat gggagttaga 2760 agctgatgtg tgcatgagaa tagaaagggg aaacttccct gcaagaatga ggaaagccgc 2820 cttgaaccgc ttcaagtgtt tcgccaacgc tgtgttccag ctaagcaacg gcgagttaat 2880 agagcaaggc ttaccgggtc taatgaagtc tggtagttac tgtacctcga gtactaacag 2940 ccggataaga tgcctcatgg ctgaaataat acaagccccg tggtgcatcg ccatgggaga 3000 cgactcggta gaaggatatg ttgagggggc ccgagagctc tacgaagaac tgggtcacac 3060 atgtaaagac tacatcccgt gtgctgctga gggagagatc ctcaaggaag tgaacttttg 3120 ctcacacagc atagctgcgg atcgttgcta tctccaatcc tgggctaaaa ccttatttag 3180 atatctggaa caccctgacg actttgagga gttggcagtg gaattgcagg gttgtcagtg 3240 gccgcggata tacaagtact tacgtcggat tggaagagtc tccgacaaaa ttcccgaacc 3300 aagagaagaa aatggtcgcg aagacgagaa gagcaaacag aaagaagaag aggaacaaca 3360 acgcacagag gaggactacg gaacccaaca ggcagctagc tactgctcgg agggtcacga 3420 tcccagccgc tacttcggtg gtggtgagga agtcttcccc tgtaatccgc tctgatcgca 3480 agggtatcca ggtgtgcaac actgaattta taaggtcgtt tgatcttaac gcgagcttta 3540 ctgtcggctc gttgccttgt acacctggta cgatgccatg gctctcacgc atggcagcaa 3600 gttggggacg ctggaaatgg aatagcttga gatttacata cattccggcc gctccatcca 3660 atacgcaggg aactgtagca atgggattcc tgtatgattc attagacagt cttccatcta 3720 atttggcatc catgagctct cttgatgggt tcaccaccgg ggccgtttgg tctgggtgtg 3780 aaggatctgc ttatttagct aaaccatcga tgagagacat ccctggcgcc atatcaactt 3840 gtttggacat tgatcctgac tggcgtcaga agagatggag gtatataaca gctttggagt 3900 tggcagcgtt gtccaaacca gattttaata tctacgctcc agcgcggcta accatagccg 3960 cagctaacag ctccataaac atagctagtg tgggtactct ttatgccact tatgaggttg 4020 aattatttga cccaataagc gctgaattga acctccccac tccggctgta gtaactcaag 4080 ccaaagagga tgctacgaag cacacctcca atacggagga agaggacggg aatgctaaac 4140 cccattaagt agccgtatga tggttttcgt taatccatta gccgcgagga ggtcattgaa 4200 ccttgtggtt ttctcattta aatgctggcg gacttagcac cgccccctta tcctgtcggg 4260 tgtgacaggg tgttt 4275 //