ID U30944; SV 1; linear; mRNA; STD; VRL; 6303 BP. XX AC U30944; XX DT 10-APR-1996 (Rel. 47, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 7) XX DE Youcai mosaic virus replicase, movement protein, and coat protein mRNAs, DE complete cds. XX KW . XX OS Youcai mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6303 RX DOI; 10.1007/BF00017814. RX PUBMED; 8616237. RA Aguilar I., Sanchez F., Martin Martin A., Martinez-Herrera D., Ponz F.; RT "Nucleotide sequence of Chinese rape mosaic virus (oilseed rape mosaic RT virus), a crucifer tobamovirus infectious on Arabidopsis thaliana"; RL Plant Mol. Biol. 30(1):191-197(1996). XX RN [2] RP 1-6303 RA Ponz F.; RT ; RL Submitted (04-JUL-1995) to the INSDC. RL Fernando Ponz, Biologia Molecular y Virologia Vegetal, Cit-Inia, Autovia RL A-6, km 7, Madrid 28040, Spain XX DR MD5; 77e45e8bcd4950421a4e5ae28d8daf83. DR EuropePMC; PMC4597857; 26237414. DR EuropePMC; PMC5282660; 28137291. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6303 FT /organism="Youcai mosaic virus" FT /host="Brassica napus" FT /lab_host="Brassica juncea" FT /mol_type="mRNA" FT /db_xref="taxon:228578" FT 5'UTR 1..68 FT variation 2 FT /replace="" FT variation 12 FT /replace="a" FT CDS 69..4862 FT /codon_start=1 FT /transl_except=(pos:3378..3380,aa:OTHER) FT /product="replicase" FT /note="putative replicase; contains a readthrough stop FT codon" FT /db_xref="GOA:Q66220" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q66220" FT /protein_id="AAB60599.2" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKSVSTEQTLLASNAYPEFEISFTHTQQAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYLSRLDRQRRPVPEYQ FT RAAFHNYAENPHFVHCDRPFQQCELSTVNRWDTYAIALHSIYDIPADEFGAALLRKNVK FT ICYAAFHFHENMLLDCDSVTLEDIGATFQRAGDKLNFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRYVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYKTSVDSEEFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAINFWFPKVRDMVIIPLFDASITTGRMSRREVLVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDATAKELIWSSLCDALKGVIPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRTEEFQSCDLSKPLEESEKYYNALSELSVLENLGSFDLDAF FT KELCQKKNVDPDVAAKVVVAIMNSELTLPFKKPTEEEVAEALSGEVVQDEGLRLSNKAP FT FPCVSNLKEGLVPACGLCPNGANFDRVDMDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGKPVCDETWFRLAVSSDSLVYSDMGKLKTLTSCCRDGEPP FT EPTAKLVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGITRADKDN FT VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLMLLSHCDVAYVYVDTQQIPFICRV FT ANFPYPAHFAKLVVDEKEDRRVTLRCPADVTYFLNQKYDGSVLCTSSVERSVSAEVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISELGKLSNFLLEMYKVESGTQXQLQ FT IDTVFKGTNLFVPTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDCR FT IDFSKSVQVPKERPVFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDT FT ASLVVEKFWDAYVVKEFSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEY FT KHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLETIDTSKFLF FT YTRKTPTQIEEFFSDLDSSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAE FT VWRQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVIKAAF FT CGDDSLIYIPKGLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPL FT KLISKLGCKHIRDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGAFVYC FT SIIKYLSDKRLFKDLFFV" FT variation 2824 FT /replace="g" FT variation 2869 FT /replace="" FT misc_feature 3378..3380 FT /note="readthrough stop codon" FT variation 3924 FT /replace="t" FT CDS 4874..5671 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:Q66221" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/Swiss-Prot:Q66221" FT /protein_id="AAB60600.1" FT /translation="MSYEPKVSDFLALTKKEEILPKALTRLKTVSISTKDVISVKESES FT LCDIDLLVNVPLDKYRYVGVLGVVFTGEWLVPDFVKGGVTVSVIDKRLENSKECIIGTY FT RAAAKDRRFQFKLVPNYFVSVADAKRKPWQVHVRIQNLKIEAGWQPLALEVVSVAMVTN FT NVVVKGLREKVIAVNDPNVEGFEGVVDDFVDSVAAFKAIDSFRKKKKRIGGRDVNSNKY FT RYRPERYAGPDSLQYKEENGLQHHELESVPVFRSDVGRAHSDA" FT variation 4957 FT /replace="a" FT variation 5237 FT /replace="c" FT CDS 5595..6068 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q66222" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/Swiss-Prot:Q66222" FT /protein_id="AAB60601.1" FT /translation="MVYNITSSNQYQYFAAMWAEPTAMLNQCVSALSQSYQTQAARDTV FT RQQFSNLLSAIVTPNQRFPEAGYRVYINSAVLKPLYESLMKSFDTRNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLNELSNGHGLMNRAEFEVLLPWATAPAT" FT 3'UTR 6069..6303 XX SQ Sequence 6303 BP; 1775 A; 1189 C; 1606 G; 1733 T; 0 other; gttttatttt tgttgcaaca acaacaacaa attacaataa caacaaaaca aatacaaaca 60 acaacaacat ggcacaattt caacaaacag taaacatgca aacattgcag gctgccgcgg 120 ggcgcaacag cctggtgaat gatttagcat ctcgacgcgt ttatgataat gctgtcgagg 180 agctaaatgc acgctcgaga cgccctaagg tccatttctc caaatcagtg tctacggaac 240 agacgctgtt ggcttcaaac gcttatccgg agtttgagat ttcctttact catacccaac 300 aggccgtaca ctccctagcg ggtggtctaa ggactcttga gttggagtat ctcatgatgc 360 aagttccgtt cggttctcta acgtacgata tcggtggtaa cttcgctgcg caccttttca 420 agggacgcga ttacgttcac tgctgcatgc caaatttgga tgtccgtgat atagctcgtc 480 atgaggggca caaggaggca atctttagtt acctttctcg cctagacagg caaaggcgtc 540 ctgtccccga atatcagaga gcggcattcc ataattacgc ggagaatcct catttcgttc 600 attgcgaccg accatttcag cagtgtgagc taagcaccgt taaccggtgg gacacttacg 660 ctattgcact tcatagtatt tatgatattc ctgctgatga gttcggtgcg gcgctactca 720 ggaagaatgt aaaaatttgt tacgcggctt tccattttca cgagaacatg ctcctggact 780 gtgactctgt caccttggag gatattggag ccacatttca acgtgccggt gacaagttga 840 atttcttctt ccacaacgag agcacactca attacaccca tagttttagt aatataatta 900 agtacgtgtg taagaccttc ttccctgcga gtcagcggta tgtgtatcat aaggagtttt 960 tagttactag agttaatacg tggtattgta agtttactag agtcgatact tttactcttt 1020 tccgtggtgt gtacaagaca agtgtggata gtgaggagtt ctataaggct atggacgacg 1080 cgtgggagta caagaagacc ttggctatgc tcaattccga gaggaccatc ttcaaagata 1140 gtgctgccat aaatttctgg tttccaaagg ttagagatat ggtcatcata cctctcttcg 1200 acgcatcaat cacaactgga aggatgtcaa gaagggaagt gttggtgaac aaggattttg 1260 tttacacggt ccttaaccac atcaaaacct atcaagcaaa ggccttaaca tatgctaatg 1320 tgttatcttt cgttgagtct attaggtcta gagttataat taacggtgtc actgccaggt 1380 cggaatggga taccgacaag gcaatcttag gtccgttagc gatgacattt ttccttgtca 1440 caaagttgag tcatgttcag gacgagatcg tccttaagaa gttccaaaag tttgacgcta 1500 ctgccaaaga actgatttgg tcaagtctct gcgatgccct gaagggggtt ataccctcgg 1560 tcaaagagac tcttgcgcgc ggtggtttcg tcaagcttgc tgaagagagt ttagagatca 1620 aaattccaga gttatactgc acttttaccg acaggttagt gctcgagtat aagaggacgg 1680 aggagttcca gtcgtgcgat ctgtccaaac ctttggaaga gtctgagaag tactataatg 1740 cgttatccga gctgtctgtg ctcgaaaatc ttggctcgtt tgatctggat gcctttaagg 1800 agttgtgtca gaagaagaac gtcgaccctg atgtcgctgc gaaggtggtg gtggcgatta 1860 tgaatagtga attgacgtta ccgttcaaga aacctacaga agaggaagtt gctgaggcgc 1920 ttagcggaga agtggtgcaa gatgaaggat tgaggttgag taacaaagca cccttcccat 1980 gtgtgagtaa cctcaaggaa ggtttagttc cggcgtgtgg attgtgtccg aatggtgcga 2040 acttcgacag agtggatatg gacatatctg agttccatct caagagtgta gatgcagtta 2100 aaaaaggggc tatgatgtca gcggtgtaca cgggaaagat caaggttcaa cagatgaaga 2160 actacgtcga ttacctaagt gcctcattgt cagctacagt ctcaaacctc tgtaaagtgc 2220 ttagagatgt tcacggagtt gaccctgaat ctcaagagaa gtcgggtgtg tgggatgtga 2280 gaagaggacg ctggttacta aaacctaacg cgaagtgtca cgcttggggt gttgcggaag 2340 atgctaacca caagttagtt atcgtgttac ttaactggga tgaagggaaa cctgtttgtg 2400 atgagacatg gtttagactg gcggtttcta gtgactcttt ggtgtactcg gacatgggta 2460 aacttaagac gttaacgtca tgttgcagag atggtgagcc tccagaacct acggccaaat 2520 tggtgctcgt tgatggtgtt ccaggctgtg gaaaaacaaa ggaaatcttg gagaaggtaa 2580 acttttccga agacttggtg ttggtacctg gaaaagaagc gtcaaaaatg attattcgaa 2640 gagcaaacca ggcaggaatt acaagagctg acaaggacaa tgtgaggacg gtagattcct 2700 tcttgatgca ccctccaaaa agggtgttca aaaggttgtt tatcgatgag ggattaatgc 2760 tgcacacagg ctgtgttaac tttttgatgt tgctatctca ttgtgatgtg gcatacgttt 2820 acgttgatac acagcaaatt cccttcattt gtagggttgc gaatttccct tatcctgcgc 2880 atttcgcgaa acttgttgtg gacgagaagg aagatagaag ggtcacgctc aggtgtccgg 2940 cagacgttac atacttcttg aatcagaagt acgacgggtc agtactgtgt acgagttctg 3000 tggaaaggtc ggttagtgca gaggttgtga gagggaaagg tgctttaaac ccaataactt 3060 taccgttaga ggggaaaatt ctcaccttta cacaagccga taaattcgaa ttgttggata 3120 agggttacaa agatgtgaat acggttcatg aagttcaggg cgaaacgtac gagaagacag 3180 ctatcgttcg gttgacagca actcccttgg agatcatatc aagagcgtca cctcatgttc 3240 tggtggcgct gacaaggcac actacacgat gtaaatatta cactgttgtg ctagacccga 3300 tggtgaatgt gatttctgaa ctggggaaac tgtccaactt ccttcttgag atgtataagg 3360 tagagtcggg tacccaatag caattacaga tcgacacagt gttcaaaggg acaaacttgt 3420 tcgtcccgac gccaaagtca ggagattggc gagacatgca gttctattat gacactcttc 3480 ttcccggaaa cagtactatt ctcaatgaat tcgatgctgt gacgatgaat ttgagggata 3540 tttccttaaa tgttaaggac tgtaggatcg acttctcgaa atctgtgcaa gtgccgaaag 3600 aacggccggt tttcatgaaa cctaaattga ggacggcggc agaaatgcca cgaactgctg 3660 gtctacttga gaaccttgtc gcgatgatta aaagaaacat gaatgcacca gatttgacag 3720 gtacgattga tatagaggac actgcgtcgt tagtagttga aaagttttgg gatgcctatg 3780 tggtgaagga attcagcgga acagacggaa tggctatgac gagggaaagt ttttctagat 3840 ggctctccaa acaagagtcg tctacagttg gtcagttagc ggatttcaac tttgtggatt 3900 tgccggcagt ggatgagtat aagcatatga tcaaaagcca acccaagcaa aagttagact 3960 tgagcattca agatgaatac cctgcgttgc agactatagt ctatcattcg aagaagatca 4020 atgcgatttt tggtcctatg ttttcagagt taacgaggat gctccttgaa acaatagata 4080 cttccaagtt tctgttttac accaggaaga cacctacgca gattgaagag tttttctctg 4140 atctagattc gtcacaagcg atggagattc tggagctcga catttcaaag tatgacaagt 4200 cacaaaacga gttccattgc gctgttgagt acaagatatg ggaaaagctt ggaattgacg 4260 attggttagc ggaggtgtgg agacaaggac acagaaaaac gacgctcaaa gattacacgg 4320 ctggtataaa gacatgtttg tggtaccaaa ggaaaagcgg tgacgtgact accttcattg 4380 ggaacacaat tatcatagcg gcgtgtttga gttctatgat cccgatggat aaagtgatca 4440 aggcggcttt ctgcggtgac gacagtttga tatatattcc gaagggtcta gacctaccgg 4500 atattcaagc tggagccaac cttacgtgga actttgaggc caaattgttc agaaagaagt 4560 acgggtattt ttgtggtcgt tacgttattc accacgatag aggagctatt gtatattatg 4620 atccacttaa gttgatatct aaattaggtt gtaaacatat tagagatgaa gttcacttag 4680 aagagttgcg tagatctttg tgtgatgtaa ctagtaattt aaataattgt gcgtattttt 4740 cacagttaga tgaggccgtt gccgaggtcc ataagaccgc ggttggcgga gcgtttgttt 4800 actgtagtat aattaaatat ttgtcagata aaaggttgtt taaagatttg ttttttgttt 4860 gactgagtcg ataatgtctt acgagcctaa agtaagtgac ttccttgctc ttacgaaaaa 4920 ggaggaaatt ttacccaagg ctttaacgag gttaaagact gtctctatta gtactaagga 4980 tgttatatct gttaaggagt ctgagtccct gtgtgatatt gatttgttag tgaatgtgcc 5040 attagataag tataggtatg tgggtgtttt gggtgttgtt ttcaccggtg aatggctagt 5100 accggatttc gttaaaggtg gggtaacagt gagcgtgatt gacaaacggc ttgaaaactc 5160 caaggagtgc ataattggta cgtacagagc tgctgcgaag gacagaaggt tccagttcaa 5220 gctggttcca aattacttcg tatccgtcgc ggatgccaag cgaaagccgt ggcaggttca 5280 tgtgcgaatt caaaatctga agattgaagc tggatggcaa cctctggctc tggaggtggt 5340 ttctgttgcc atggttacta ataacgtggt tgttaaaggt ttgagggaaa aagtcatcgc 5400 tgtgaatgat ccgaacgtcg aaggtttcga aggtgtggtt gacgatttcg tcgattcggt 5460 tgctgcattc aaggcgattg acagtttcag gaagaaaaag aaaaggattg gaggaaggga 5520 tgtaaatagt aataagtata gatatagacc ggagagatac gccggtcctg attcgttaca 5580 atataaagaa gaaaatggtt tacaacatca cgagctcgaa tcagtaccag tatttcgcag 5640 cgatgtgggc agagcccaca gcgatgctta accagtgcgt gtctgcgttg tcgcagtcgt 5700 accaaactca agcggcaaga gatactgtta gacagcagtt ctctaacctt ctgagtgcga 5760 ttgtgacacc gaaccagcgg tttccagaag caggataccg ggtgtatatt aattcagcag 5820 ttctaaaacc gttgtacgag tctctcatga agtcctttga tactaggaat aggatcattg 5880 aaactgaaga agagtcgcgt ccatcggctt ccgaagtagc taatgcaaca caacgtgttg 5940 atgatgcgac cgtggccatc aggagtcaaa ttcagctttt gctgaacgag ctctccaacg 6000 gacatggtct gatgaacagg gcagagttcg aggttttatt accttgggct actgcgccag 6060 ctacataggc gtggtgcaca cgatagtgca cagtgttttt ctctccactt aaatcgaaga 6120 gatatactta cggtgtaatt ccgtaagggt ggcgtaaacc aaattacgca atgttttagg 6180 ttccatttaa atcgaaacct gttatttcct ggatcacctg ttaacgtacg cgtggcgtat 6240 attacagtgg gaataactaa aagtgagagg ttcgaatcct ccctaacccc gggtaggggc 6300 cca 6303 //