ID U23414; SV 1; linear; genomic RNA; STD; VRL; 6376 BP. XX AC U23414; XX DT 18-MAY-1995 (Rel. 43, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 3) XX DE Cassava common mosaic virus Brazilian strain, complete genome. XX KW Potexvirus. XX OS Cassava common mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6376 RX PUBMED; 8601791. RA Calvert L.A., Cuervo M.I., Ospina M.D., Fauquet C.M., Ramirez B.C.; RT "Characterization of cassava common mosaic virus and a defective RNA RT species"; RL J. Gen. Virol. 77(Pt 3):525-530(1996). XX RN [2] RP 1-6376 RA Calvert L.A., Cuervo M.I., Ospina M.D., Fauquet C.M., Ramirez B.C.; RT ; RL Submitted (24-MAR-1995) to the INSDC. RL Lee A. Calvert, Virology Unit, CIAT, A.A. 6713, Cali, Colombia XX DR MD5; 4cfa2c04a456f7f0b296ce13102b6df9. XX FH Key Location/Qualifiers FH FT source 1..6376 FT /organism="Cassava common mosaic virus" FT /host="Manihot esculenta" FT /strain="Brazilian" FT /mol_type="genomic RNA" FT /clone="cDNA clones pCsCMV-28, pCsCMV-X7, pCsCMV-SP2, FT pCsCMV-64" FT /db_xref="taxon:39046" FT CDS 77..4426 FT /codon_start=1 FT /note="ORF 1; putative RNA dependent RNA polymerase" FT /db_xref="GOA:Q65974" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q65974" FT /protein_id="AAC54775.1" FT /translation="MALVRNVFSQITDPSLKAVIQDDSYRTIKAELNQAKIINPYAQTG FT EAADLLETLGVITHPYAIATHTHAAGKALELDLYHSVSHYLPRKSPVTFMFMKPAKLQY FT LRRGPQHRDHFVNSWVEPKDLARYPEQTVVDGIPPIQTSIAFMGDTLHFLTPKFVGTLF FT ARSPKLKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQL FT GWLDVGLIEYFEENAPDGSEYLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIAT FT NTQYITVPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQ FT EYSPDELVLLANYFMLISELSSKASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEF FT AQLLEALLWTNVDLILPVRYVKILSCLGGWDNEMPFKFRTLPGESDLSNDELGPQLSHY FT DTSPKPAPSAIEASEEAAALLLKTRGLVGKRRVARLRSEGDPEVAACLKIKGEPTTTQS FT PSSSGLSVLEKELDQIATQQTKLIVQEEEREDFIKTVLNKRRKACEDKPTLPLSPELEK FT RHEALKSKAESSEASKTEPRKDENYTEMVNKTLIENAKEAGLPWAVWMPKLNALGFEAK FT EKQISPITKSMIMPITDIKTGIPVHRETKAPQELLDLLKALSRMPTLWTPDTLRAKSFT FT SDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRPVPLSVIHGAGGSGKSAALQDLLRDHP FT ELPIQVILPTNELRMDWLSKLPRNRPENFRTFEKAYLQTNAPSIIMDDYGKLPQGYVEA FT FAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLEPSTQIFSQFSRYYINATHRNAKKL FT ANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKKAAFSEAGHKTSTYAGCQGITARK FT LQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPTSSNFWEKLEATPYLKTFLSMVRE FT DKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEFTEELAQKHEREIFNESHGHTNCVQ FT TDNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWTEFVKKKDIGDILWLNYKRAMH FT LPEDPIPFEELWELAAREIQHTYLSKSTQMLKNGERRQSPDFGEKDILIFLKSQWVKKM FT EKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRIRDIYMPEHIMINCERTPTDLSYWA FT LNYWNFDKPSYANDFTAFDQSQDGAMLQFEILKAKHHNIPEWVLEGYLDIKLDSRIFLG FT TLSIMRLTGEYQTFDANTECNIAYTHTRFDIPEGVAQDSAMDATCLEKPSFKLIESELS FT LKLYAGDCKPCLKAQIPGEWAEFCGYLITPKGLIKDPLKLAASFRLAKERGKRELDNCL FT ENYARDMKLAYDLGDDLLELLTPEQAQLHQVTVRDMIKLGASDILNL" FT CDS 4429..5124 FT /codon_start=1 FT /function="required for transport" FT /note="ORF 2; triple gene block protein" FT /db_xref="GOA:Q65975" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q65975" FT /protein_id="AAC54776.1" FT /translation="MDSFIDELTVAGFTRTSLPFSKPLVVHAVAGAGKSTVLRNFCKLE FT PTAVAYTHGKPDPPNLEQTHIRVVQNPVKGHFCLLDEYTAQGVSNIEGWSALLADPLQH FT DSPALRPHFVKYLSHRICPKTATLLQELGIKIQSARQDEAEINFTGLFDGPIIGTVIHL FT DQIAKKLASSHGIHSYCPRELRSFETDVVTVLSTSPITELNDKVGLYIACTRHTTALHV FT RAPPPYPSN" FT CDS 5090..5428 FT /codon_start=1 FT /function="required for transport" FT /note="ORF 3; triple gene block protein" FT /db_xref="GOA:Q65976" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q65976" FT /protein_id="AAC54777.1" FT /translation="MSGHHHLTPPTDYSKAVLAAVIGISSSIFIHTITRSTNPHVGDNI FT HALPHGGYYRDGTKTVYYGGPGPTAVSASAGKFWAFLCIFTISGFLFFSNRHRTNSSCS FT CRPNLGAN" FT CDS 5277..5570 FT /codon_start=1 FT /function="required for transport" FT /note="ORF 4; triple gene block protein" FT /db_xref="GOA:Q65977" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q65977" FT /protein_id="AAC54778.1" FT /translation="MEGPGPQLFPLQPESSGRSSASLPSQAFFSSQIGIGLTLVVAAVL FT TWALISLQSSKGGCLIIIDGAKALLQGDCSYISPEILANLHPYGLSLPKSRN" FT CDS 5573..6262 FT /codon_start=1 FT /product="coat protein" FT /note="ORF 5" FT /db_xref="GOA:Q65978" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q65978" FT /protein_id="AAC54779.1" FT /translation="MATPTSTTPTTATITQAATTPLSALSTAPTDEELSRLDLKPASNL FT VASADALSAIAADWASLKVPTAQLMRHALDLVNFCFDSGSSKYTTVEGSSPTPTIPRAA FT LAGAVRKHTTLRQFCRYYAKIIWNARVKANIPPAGYANAHIKPEQAFAGFDFFDGVMNV FT AALEPSGGLVREPTPQEIIAAETARSLNLFEAQSKGNNLATNATQVTRGRLSSSEPQVQ FT FLTGVDE" XX SQ Sequence 6376 BP; 1943 A; 1632 C; 1375 G; 1426 T; 0 other; caaaacaaaa cagaacaaaa caatctaact aactcatacc ggcctgaatc gagcgtctct 60 tgactagatt cacctcatgg cgttagtaag gaatgtcttc tctcagatta cagatccaag 120 cctaaaagca gtaatacaag atgattcata tcgaaccatc aaagcagaac tcaaccaggc 180 aaagatcata aatccatatg cgcaaacagg cgaagcggca gatttgttgg aaactttggg 240 cgtcatcact cacccatacg ccatagcaac gcacacacat gctgccggaa aagctctgga 300 actagatcta taccattcag tatcacatta tctccccagg aaaagcccgg tcaccttcat 360 gttcatgaaa ccagcaaagc tacaatactt gagaaggggc ccacaacacc gtgaccactt 420 tgttaattct tgggtagaac ccaaagatct cgctagatac ccagaacaga cagtggtaga 480 cggaatccca ccaatccaaa catctattgc tttcatgggg gacaccctcc acttcctcac 540 accaaaattt gttggtacgc tcttcgcgcg atctcccaaa ctcaaaacct tctatgctac 600 aatggtcctt ccacccgagg ctctacacaa gatgaactcc ctataccccc agatatacac 660 actgcagtat aaagaaaaag gtttcattta tactccaggt ggccatgctg gagcttctta 720 ctaccatgaa tactcacaat tgggctggct agatgttggt ctcatagagt atttcgaaga 780 gaatgctcct gatggcagtg aatatttggg aactaagtgg gctgtcactg cacaaagaat 840 agaaactaag ggcgcaaatc atctttttgt tttccagagg ggaaggctcc aaactccaca 900 aatgagatct attgcgacca acactcaata catcactgtg cccgctgtct tcttgcctaa 960 gaaattcaat tctagacaac ctctgaagaa gacgattgca cagcaaatgt ttctctacat 1020 caaatcagtc aaacaagtta ctgagagaga catatacagc aaactgagac agctcatcaa 1080 aacttcagag ctgcaagaat actccccaga tgagctcgta ctactggcaa actacttcat 1140 gctcatctct gaactcagtt ccaaagcctc agcggaagag gttttagcag gatcgctgtt 1200 taagaaactg ttccgcccca taaaatccaa agtcaccgca ttcatccaca aactctttgg 1260 ccaaccagaa ttcgcacaac tacttgaagc tctgttgtgg acaaatgttg acctgatcct 1320 tcctgtgagg tatgtcaaaa tcttgagctg cctgggaggc tgggacaatg aaatgccttt 1380 caaatttaga acccttccag gagaatcaga tctttcaaac gatgagctgg gcccccaact 1440 gtcacattat gacacatctc caaagccggc tcccagcgct atcgaggcca gtgaggaagc 1500 tgcagcgctc ctcctcaaaa ctagaggctt agtgggaaag agaagagtgg ccagactgag 1560 atcagaaggg gatcctgagg tcgctgcttg cctcaagata aagggtgagc caacaacaac 1620 acagagcccc tcctcttcgg gcctctcagt gttggagaaa gagctggacc agattgcaac 1680 acagcaaaca aaattgatcg tccaggagga agaaagagag gacttcatca aaactgtgct 1740 gaataaaaga agaaaagctt gtgaagataa gcctactctg ccacttagtc ctgaactgga 1800 aaagagacac gaggcactca aaagtaaagc tgaaagttca gaggcaagca agacggaacc 1860 caggaaggat gagaactaca cggaaatggt aaacaaaacc ctcattgaaa acgccaaaga 1920 agctggttta ccatgggctg tttggatgcc aaaactgaat gccttgggct ttgaagctaa 1980 ggagaaacaa atatcaccaa tcaccaaatc catgatcatg ccaatcactg acatcaagac 2040 tggaattccg gtgcataggg aaactaaagc tccacaggaa ctcttagact tactcaaagc 2100 tttgagtagg atgcccactc tctggactcc agacaccctc agggcgaagt ccttcacttc 2160 agatattaag aatgggagaa caggaaagtg cttgcaacaa gagagccaat catggaagga 2220 ggcacagacc ctcaaggttg atcacaacat tcggcccgtt ccactctctg tcatacatgg 2280 ggcagggggt tctgggaaaa gtgccgcact tcaggaccta ctccgcgatc acccagaact 2340 accaattcaa gtgatcctcc ccaccaatga gctaaggatg gactggcttt caaaactccc 2400 aaggaataga cccgaaaatt tcaggacatt tgagaaagcc tatctgcaga caaatgcacc 2460 gagtatcatc atggacgact acggaaaact accacaaggg tatgtggaag catttgccgt 2520 tacgcatcct aatgtagaac tcattgtgct aacgggggac aacaagcaga gtgtgcacca 2580 tgaaacaaat gaacaagcta tgattgctca acttgagcct agcacacaga tctttagcca 2640 attttcacgc tattacatca atgcaactca cagaaatgcg aaaaagttgg ctaacatgct 2700 gggggtttac tcagacaaca ataaggagct caagataacc catggcttcc agcccattaa 2760 agacatacat cttctggtac caagtctgat caagaaagca gccttctctg aggcgggaca 2820 caaaacttca acatatgcgg gatgtcaggg catcacagca cgcaaactgc aaattctgct 2880 tgattcaaac accccaatgt gctcacagga ggtgctgtac accgctctat ctagagctgt 2940 ggactccatc cacttcatta acacagcccc cacaagctca aatttctggg aaaaactgga 3000 agctaccccg tacctcaaga cattcctgtc catggttcga gaagacaaaa ttctagagtg 3060 gagaccaaaa gagcctgaac ctgcaaagga ggagccccca aagacgcact ttccggtgga 3120 gaatggcaac acaatcctcg aggagttcac tgaggagcta gctcaaaagc atgaaagaga 3180 aatcttcaat gagagtcacg gtcacacaaa ctgtgtgcaa actgacaaca aaatcattca 3240 aacacttagt catcaacagg ctaaggacga ggctcttctc tgggaaacca tcaaagctag 3300 gctcgtgata agtcacaaac aacacaattg gacagagttc gtgaagaaga aagacattgg 3360 ggacatcctc tggctgaact acaaaagagc tatgcatttg ccagaagatc ccatcccatt 3420 tgaagagttg tgggaactag ctgcccggga aatccaacac acatatctga gcaagtccac 3480 tcaaatgctc aaaaatggag agaggaggca atcacctgat tttggggaga aggacatcct 3540 gatattcctt aaaagtcaat gggtcaagaa aatggagaaa ctgggagctc caaagattaa 3600 gccaggacag actatagcgt ccttccaaca atccgctgtc atgctatatg gcacaatggc 3660 aagatacatg aggaggattc gagatatcta catgccggag cacataatga ttaactgtga 3720 gagaactccc actgacctct catactgggc attaaattac tggaacttcg acaaaccgtc 3780 ctacgccaat gacttcacag catttgatca aagccaagac ggagcaatgc ttcagtttga 3840 aattttaaaa gcaaagcacc acaacattcc tgaatgggtg cttgaagggt accttgacat 3900 taaattggac tcaaggatat tcctgggcac actgagcatt atgagattga caggagaata 3960 ccaaactttt gatgcaaaca ctgaatgcaa catagcatac acgcatacta gatttgacat 4020 acctgaagga gtagcccaag acagcgctat ggacgccaca tgcttggaaa aaccctcttt 4080 taaacttatt gagtccgaac tctcactcaa attgtatgcg ggggattgca agccctgcct 4140 taaagcacaa attccgggag agtgggctga attctgcggg tacctcatta cacccaaggg 4200 cttgatcaaa gatccactaa agctggcggc ctcctttcgg cttgccaagg agagaggaaa 4260 gagagagcta gacaactgcc tggaaaatta tgccagagac atgaaactag cttatgattt 4320 gggagatgat cttttggaac tgctaactcc tgaacaggca caacttcatc aagtaacggt 4380 tcgtgacatg attaagttgg gtgcctcaga tattttgaat ctctaaccat ggactctttc 4440 attgatgaac taactgtagc tggtttcact aggacatctc ttcccttctc caagcctttg 4500 gtggtacatg ctgttgcagg agctggcaaa agtacggtgt tgagaaattt ctgcaagttg 4560 gagcccactg ctgtggctta tacacacgga aagccggacc ctccaaatct tgagcaaaca 4620 cacataagag tggtgcagaa cccggttaaa ggacatttct gcttacttga cgagtacacg 4680 gcacagggag tgtctaacat agaaggctgg tcagctctgc ttgcagaccc tctacagcac 4740 gacagccctg ccctcaggcc tcattttgta aaatatcttt cacaccggat ctgcccaaaa 4800 accgcgactt tgctccagga actaggaatc aaaatccaat ctgccaggca agacgaggcg 4860 gaaataaatt tcactggact ctttgatggc cccatcattg gcactgtaat tcacctggat 4920 caaatcgcca agaagctcgc atcctctcac gggatccatt cctactgccc cagggagttg 4980 cgaagctttg agacggacgt tgtcactgtg ctgtccacca gccccatcac agagctaaac 5040 gacaaagtgg gtctctacat tgcttgcaca agacacacaa cagcccttca tgtcagggca 5100 ccaccacctt acccctccaa ctgattacag caaagcagtc ttggccgccg tcattggaat 5160 ctcatcctcc atattcatcc acaccatcac aagatctacc aaccctcacg ttggagacaa 5220 cattcacgcc cttccacacg gaggatatta cagggacggg accaagactg tttactatgg 5280 agggcccggg cccacagctg tttccgcttc agccggaaag ttctgggcgt tcctctgcat 5340 ctttaccatc tcaggctttc ttttcttctc aaataggcat aggactaact ctagttgtag 5400 ctgccgtcct aacttgggcg ctaattagtt tacagtctag taagggcggt tgtctaataa 5460 tcattgacgg agcgaaagct ttgctccagg gtgattgttc atacatcagc ccagagattt 5520 tggcaaacct ccatccatac gggttaagtt tgcctaagtc tcgaaattag cgatggccac 5580 ccctacttca accactccta caactgcaac catcacccaa gctgcaacca ccccactctc 5640 tgcactctcc acagctccaa cggatgaaga gctgagtcgt cttgacttga agccagcctc 5700 caatttggtt gcctcagctg atgcactctc agcaattgct gcagactggg ccagtctgaa 5760 ggtacccact gctcaactca tgaggcatgc tctggatctg gtcaacttct gctttgacag 5820 cgggagttca aaatacacga ctgtggaagg ctcttcacca actccaacca ttccacgcgc 5880 cgcacttgcc ggagcagtac gtaagcatac aaccttacgc cagttctgcc ggtattatgc 5940 aaaaatcatt tggaatgcta gagtcaaagc caacatacct cctgccggct acgcaaatgc 6000 tcacatcaaa cctgagcagg ctttcgctgg ttttgacttc ttcgacggag ttatgaatgt 6060 ggccgctctt gaaccttccg gtggactagt tagggagccg acaccacaag aaatcattgc 6120 agcagagacg gcacgatccc tgaacttgtt tgaggcacaa tcgaaaggga acaatctagc 6180 caccaatgca acccaggtca cacgtgggcg attgagcagc tctgaaccac aagtgcagtt 6240 tctcacagga gtggatgagt aggatccaca cataaataaa cagcgtcaac gtcgcctctg 6300 ctccgggcag gttccaacgt ttatcatgca gtagcgtaac ttaagtacta ggcacccgcg 6360 gtcagtttgg cggttt 6376 //