ID   U23058; SV 1; circular; genomic RNA; STD; VRL; 359 BP.
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AC   U23058;
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DT   19-APR-1995 (Rel. 43, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 5)
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DE   Potato spindle tuber viroid (PSTVd) strain RG 1, complete genome.
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KW   .
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OS   Potato spindle tuber viroid
OC   Viruses; Riboviria; Pospiviroidae; Pospiviroid.
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RN   [1]
RP   1-359
RA   Gruner R., Fels A., Qu F., Zimmat R., Steger G., Riesner D.;
RT   "Interdependence of Pathogenicity and Replicability with Potato Spindle
RT   Tuber Viroid (PSTVd)";
RL   Virology 0:0(0).
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RN   [2]
RX   DOI; 10.1038/273203a0.
RX   PUBMED; 643081.
RA   Gross H.J., Domdey H., Lossow C., Jank P., Raba M., Alberty H.,
RA   Saenger H.L.;
RT   "Nucleotide sequence and secondary structure of potato spindle tuber
RT   viroid";
RL   Nature 273(5659):203-208(1978).
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RN   [3]
RP   1-359
RA   Gruner R., Fels A., Qu F., Zimmat R., Steger G., Riesner D.;
RT   ;
RL   Submitted (20-MAR-1995) to the INSDC.
RL   Gerhard Steger, Institut fuer Physikalische Biologie, Heinrich-Heine
RL   Universitaet, Universitaetsstr. 1, 40225 Duesseldorf, Germany
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DR   MD5; 05ce79e56b26f9ba74dccdfc8107b7db.
DR   EuropePMC; PMC2168794; 17715233.
DR   EuropePMC; PMC5367258; 28027000.
DR   EuropePMC; PMC55696; 11376158.
DR   EuropePMC; PMC5614642; 28910391.
DR   EuropePMC; PMC6380281; 30734641.
DR   RFAM; RF00362; Pospi_RY.
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CC   NCBI gi: 755584
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FH   Key             Location/Qualifiers
FH
FT   source          1..359
FT                   /organism="Potato spindle tuber viroid"
FT                   /strain="RG 1"
FT                   /mol_type="genomic RNA"
FT                   /note="On tomato (Lycopersicon esculentum cv. Rutgers) the
FT                   PSTVd strain RG 1 shows symptoms which are more 'lethal'
FT                   than those produced by the 'lethal' PSTVd strain KF440-2.
FT                   Strain RG 1 outcompetes other PSTVd strains if RG 1 is
FT                   present in a ratio above 1:100 (RG 1:less pathogenic
FT                   strain) in the inoculation mixture"
FT                   /db_xref="taxon:12892"
FT   misc_difference 45..46
FT                   /replace="agc"
FT                   /note="sequence is 'AC'; sequence is 'AGC' in PSTVd
FT                   intermediate"
FT                   /citation=[2]
FT   misc_difference 47..48
FT                   /replace="a"
FT                   /note="sequence is 'AA'; sequence is 'A' in PSTVd
FT                   intermediate"
FT                   /citation=[2]
FT   stem_loop       join(79..87,102..110)
FT                   /note="hairpin I"
FT   stem_loop       join(127..135,160..168)
FT                   /note="hairpin III"
FT   stem_loop       join(227..236,319..328)
FT                   /note="hairpin II"
FT   misc_difference 316..318
FT                   /replace="uuc"
FT                   /note="sequence is 'UCC'; sequence is 'UUC' in PSTVd
FT                   intermediate"
FT                   /citation=[2]
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SQ   Sequence 359 BP; 74 A; 109 C; 100 G; 76 T; 0 other;
     cggaactaaa ctcgtggttc ctgtggttca cacctgacct cctgacaaga aaagaaaaaa        60
     gaaggcggct cggaggagcg cttcagggat ccccggggaa acctggagcg aactggcaaa       120
     aaaggacggt ggggagtgcc cagcggccga caggagtaat tcccgccgaa acagggtttt       180
     cacccttcct ttcttcgggt gtccttcctc gcgcccgcag gaccacccct cgcccccttt       240
     gcgctgtcgc ttcggctact acccggtgga aacaactgaa gctcccgaga accgcttttt       300
     ctctatctta cttgctccgg ggcgagggtg tttagccctt ggaaccgcag ttggttcct        359
//