ID U20976; SV 1; linear; genomic RNA; STD; VRL; 4029 BP. XX AC U20976; U07227; XX DT 10-JUL-1995 (Rel. 44, Created) DT 28-JAN-2002 (Rel. 70, Last updated, Version 9) XX DE Cowpea mottle virus polyprotein genes, complete cds. XX KW . XX OS Cowpea mottle virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Gammacarmovirus. XX RN [1] RP 1-4029 RX PUBMED; 7595392. RA You X.J., Kim J.W., Stuart G.W., Bozarth R.F.; RT "The nucleotide sequence of cowpea mottle virus and its assignment to the RT genus Carmovirus"; RL J. Gen. Virol. 76(Pt 11):2841-2845(1995). XX RN [2] RP 1-4029 RA Stuart G.W.; RT ; RL Submitted (13-FEB-1995) to the INSDC. RL Gary W. Stuart, Life Sciences, Indiana State University, Terre Haute, IN RL 47809, USA XX DR MD5; f6ce4f27f2d0ead046a7cadfd7f38978. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC4663711; 26645042. XX CC On Dec 19, 1995 this sequence version replaced gi:1039368. XX FH Key Location/Qualifiers FH FT source 1..4029 FT /organism="Cowpea mottle virus" FT /host="Vigna unguiculata" FT /mol_type="genomic RNA" FT /db_xref="taxon:12627" FT CDS 35..715 FT /codon_start=1 FT /note="ORF1; Method: conceptual translation supplied by FT author" FT /db_xref="UniProtKB/TrEMBL:Q66123" FT /protein_id="AAC54602.1" FT /translation="MLIQFGTMPPVEVQGPPRVTPWSSPSAIGKFLVGVCGGLGDAWAD FT TVTRNRTTHINAFERFGEFPIEWAINSTGDEVFEPERPTREVGKGKRVINRHAKGYFLK FT EAVTACRLQFNGVPMSTNANLLGVRKFLAGFCQEHGLTNQQSLRLVNAATPLVMTANQE FT DVEYMKLFNCVQLNEKRAEYLDAQVVHTPIRQLVARPLSGEKWSQWIAHLGGFRPATGF FT RVSN" FT CDS 776..2263 FT /codon_start=1 FT /product="RNA replicase" FT /note="putative; Method: conceptual translation supplied by FT author" FT /db_xref="GOA:Q89801" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q89801" FT /protein_id="AAC54603.1" FT /translation="MLITPRTGSHKVRKMGHVNFMGNGKLFGVHNASLVNLRRGLLERV FT FYVEREGKLVPPPEPIPGIFSRLAGFKSKLKKIVGTHSRISDDAFVALYHGRRNTIYQN FT AVDSLRIGGVQRKDSYLSTFIKAEKIPIYRKPDPAPRVIQPRNPRYNVEVGRYLRPFEH FT HLYRGIDEIMGGPTVIKGYDVNQIGNIMEKASGQFVRPVAVGFDMSRFDQHVSFDALQF FT EHGVYLQHFGGDRFLAKLLSWQLNNKGFANLPEGKVKYTRRGCRMSGDMNTAMGNCLLA FT CAITWDLMKGIKYRLLNNGDDCVVITESKNVDFVCKQLERFRDYGFTCIAEEPVYELEK FT LEFCNLHPLYDGSSWTVMRKPSVSLAKDTYCVAGWNNTKDAASWLNAIGQCGAAITGGI FT PIQQAYYQCLIRNFPRGGWLQKHHHTMDSGLYWLALKKGRSDPVPVAPEARHSFYLTTG FT VTPDAQIAVEEYYNNLHLALEFEPEVSPTSLSTTSAD" FT CDS 2287..2496 FT /codon_start=1 FT /product="movement protein" FT /note="putative" FT /db_xref="GOA:Q89922" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q89922" FT /protein_id="AAC54604.1" FT /translation="MDQTTEVRGRSRSRQRSGSSDSRKPKNNKQVQVASEAVQRRNDKP FT LRGHHGGDFVIVAHTVTLNINFNI" FT CDS 2411..2677 FT /codon_start=1 FT /product="movement protein" FT /note="putative; Method: conceptual translation supplied by FT author" FT /db_xref="GOA:Q89595" FT /db_xref="UniProtKB/TrEMBL:Q89595" FT /protein_id="AAC54605.1" FT /translation="MINHFAAITGVILLLWLIRSHSILTSIYEQNTPRVITYANLLLLL FT IAYCYFCSTQSVSYVVSHSEPVVNSKVVYISVGTSPPSLQVSE" FT CDS 2674..3777 FT /codon_start=1 FT /product="capsid" FT /note="Method: conceptual translation supplied by author" FT /db_xref="GOA:Q89761" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q89761" FT /protein_id="AAC54606.1" FT /translation="MNGNALTITQLAKKAATQGRASLSKNQKKRLDNANTNPIKSVTRT FT ARISTRKVPAATSTTITNGVPNYAVRQNKPVIQHVELWGTLMSNTTESPAYITRTLNPS FT DPATFNWVQPLSTGYDMYRLVRCEIIYTPRCAVTTTGSVVLAYDPDASDVNPDNVTDLL FT NMAGAESGSAYSPLSLVPNIKQIDRYIRDNSTSDPKLVDAGKILVASYGQQTSTAPFAL FT GEIRFAYTLQLIVPQPHSTGVQRLGSAPPVGRACIRTLTSVVNTTSRLADYTLTLKTAG FT SYMISAVDASSHTKHKANQLWKVSSGRSYWSRATNVDIRSALKSGATITFEAATDSNAE FT VYVVRDSGINDTIVVPSLHVPVNPKSL" FT CDS 2678..3454 FT /codon_start=1 FT /note="ORF6; Method: conceptual translation supplied by FT author" FT /db_xref="GOA:Q89875" FT /db_xref="UniProtKB/TrEMBL:Q89875" FT /protein_id="AAC54607.1" FT /translation="METHSPSPSSLRKPPHRGVPHYRRIKRSGWTMQTQTPSSPSHEPH FT GSPQGRSLQQPAPPSQTGCLTMRFVRTSLLSSMLSYGVLLCQILLSPLLISPGHSTQVT FT QQLSTGSNPSLQGMICTDSFVVRSYTHLGVPLRRRDQWCWLMIRTLVMSILIMSPIFSI FT WQVLNLVLPIALYRLSPISSRLIATFVTTALATPSLWMLGRYLLLAMASKRALHHLHSG FT KSGSPTLSNSLSRNLIPLGCSGWGVPPQSVGPAFAR" XX SQ Sequence 4029 BP; 1021 A; 1021 C; 1048 G; 938 T; 1 other; nggtatcgtt agccagatat ccacttctct cagcatgttg atccaattcg gaacaatgcc 60 acctgtagaa gttcaggggc ccccgagggt taccccttgg tcgagcccta gcgccatcgg 120 caaattcctc gtcggcgtgt gtggaggcct aggtgatgcc tgggccgaca ctgtcacacg 180 gaaccggact acgcacatca acgctttcga gcggtttggt gaattcccaa tagaatgggc 240 aatcaatagt accggggatg aggtttttga accggaaaga cccaccagag aggtgggcaa 300 gggcaagcgg gtcatcaata ggcacgctaa agggtacttc ctcaaagagg ccgtcactgc 360 atgtcggctt cagttcaacg gagtgcccat gtccacgaac gccaatctgc tgggtgttcg 420 gaagttcctt gcaggttttt gccaggaaca tgggttgacc aaccaacaat ctctgaggtt 480 ggtcaatgct gctacacccc tcgtgatgac ggccaaccaa gaggacgtcg agtatatgaa 540 gctgttcaac tgcgtgcagc ttaatgagaa gagggctgag tatcttgatg ctcaggtagt 600 gcacaccccg attcgacaac tggtcgctcg ccccttgtcc ggcgagaagt ggtcacagtg 660 gatagctcat ctgggtgggt tcagacctgc cacgggcttc cgcgtgtcca actaggggtg 720 cctaaggcgt gtgccagggt ttaatactag tatagttcgt ggcgaacacc ctgacatgct 780 gatcacgcct aggacaggaa gccacaaagt ccgcaaaatg gggcatgtaa atttcatggg 840 gaacggcaag ctcttcgggg tccacaatgc aagtttagtc aaccttcgaa gagggttgct 900 tgagcgggtg ttctatgtgg agcgcgaggg caagttagtg cccccccctg aacccattcc 960 gggcatattt agtaggttag cggggttcaa aagcaaactg aagaagattg tagggactca 1020 ttccaggatc agcgacgacg ctttcgttgc tttgtatcat ggcaggagga acacaatcta 1080 tcagaatgcc gtggactcct tacgtatagg tggagtgcag aggaaagatt catatttgag 1140 cactttcatc aaagctgaga aaatacccat ctaccgcaag cctgaccctg ctcccagggt 1200 gatacaaccg cgtaatccaa ggtacaatgt ggaggtgggg aggtatttac ggccctttga 1260 gcatcatctt taccgaggca tagatgagat tatgggggga ccgactgtga ttaaaggcta 1320 cgacgtgaac cagataggaa atatcatgga gaaagcgtcg ggacaattcg tccgacccgt 1380 agccgtgggc tttgatatgt cacgatttga ccaacatgtg tcctttgacg ccctccagtt 1440 tgaacatgga gtatatttac aacattttgg aggcgaccgg ttcctggcca agttattgtc 1500 atggcaattg aacaacaaag ggtttgccaa cttgccagaa gggaaagtca aatacacccg 1560 ccgagggtgc aggatgagtg gggacatgaa cacagctatg ggcaattgcc tgctggcttg 1620 tgctattacg tgggacctaa tgaaggggat caagtaccgc ttgcttaaca acggagatga 1680 ctgtgtggtt attaccgagt ccaagaacgt tgatttcgta tgcaagcaat tggaacgatt 1740 ccgcgactat gggtttacgt gcatagctga ggaaccagtg tatgagttgg aaaagctgga 1800 gttctgtaat ctacatccac tgtatgatgg ctcttcctgg acggtgatgc ggaaaccaag 1860 cgtttcattg gctaaggaca cctattgtgt ggcaggatgg aacaacacca aggatgcagc 1920 cagttggctc aatgccattg gtcaatgtgg tgcagccatc acaggcggta tacccataca 1980 gcaagcgtat tatcagtgtt taatccgcaa cttcccccgg ggtggatggt tacaaaaaca 2040 ccaccacacc atggatagcg ggttgtattg gcttgctctc aaaaagggac gaagcgatcc 2100 ggttccagtg gctcctgagg cacgccatag tttttactta actactggcg tcactccgga 2160 tgcccaaata gcggtggaag agtactacaa taacctccac cttgcgctcg agtttgaacc 2220 ggaggtatcg ccaacctcac tctcgaccac ctcagcggac tgatttaacg tttgccaagc 2280 tcatttatgg atcaaacaac ggaagttcgg ggtagaagca gaagccggca gcgatcaggg 2340 tccagcgact ctcggaagcc aaagaacaat aagcaggtgc aggtagcctc ggaggccgtt 2400 cagcgtcgaa atgataaacc acttcgcggc catcacgggg gtgattttgt tattgtggct 2460 catacggtca cactcaatat taacttcaat atatgagcag aacaccccca gggtaattac 2520 ctacgccaat ctcttgcttt tgttgatcgc atattgctat ttctgctcaa cccaaagtgt 2580 tagctacgtt gtctctcact cagaacctgt agtaaatagt aaagttgttt acatttctgt 2640 tggaacttct cctccctctc ttcaagtgtc ggaatgaatg gaaacgcact caccatcacc 2700 cagctcgcta agaaagccgc cacacagggg cgtgcctcac tatcgaagaa tcaaaagaag 2760 cggctggaca atgcaaacac aaaccccatc aagtccgtca cacgaaccgc acggatctcc 2820 acaaggaagg tccctgcagc aaccagcacc accatcacaa acggggtgcc taactatgcg 2880 gttcgtcaga acaagcctgt tatccagcat gttgagttat ggggtactct tatgtcaaat 2940 actactgagt cccctgctta tatcaccagg acactcaacc caagtgaccc agcaactttc 3000 aactgggtcc aacccctctc tacagggtat gatatgtacc gactcgttcg ttgtgagatc 3060 atatacacac ctcggtgtgc cgttacgacg acgggatcag tggtgctggc ttatgatccg 3120 gacgctagtg atgtcaatcc tgataatgtc accgatcttc tcaatatggc aggtgctgaa 3180 tctggttctg cctatagccc tctatcgctt gtccccaata tcaagcagat tgatcgctac 3240 attcgtgaca acagcactag cgaccccaag cttgtggatg ctgggaagat acttgttgct 3300 agctatggcc agcaaacgag cactgcacca tttgcactcg gggaaatccg gttcgcctac 3360 actctccaac tcattgtccc gcaacctcat tccactgggg tgcagcggtt ggggagtgcc 3420 cccccagtcg gtagggcctg cattcgcacg ttaaccagcg tggtcaacac tacttccagg 3480 ttagctgact acacgctaac actgaagaca gctggttcgt acatgatttc tgcggttgat 3540 gcttcctcgc atacaaagca taaagcaaac caactttgga aggtttcgag tggaaggagt 3600 tactggagcc gggcaaccaa tgttgatatt cgctcggccc tcaaatccgg ggccaccatc 3660 accttcgagg ctgctactga tagtaacgcg gaggtgtatg tcgtgcgtga cagtggcata 3720 aacgacacta ttgtcgtccc tagcctgcat gtgccggtaa acccaaaatc tctgtgataa 3780 acttctggcc ctccatgggg tgcgcgtccg caactttgcg cagtaccacg gacatccaga 3840 agtgccttgc ggggcgcgtc actgaggcca aaaatagagt gtagcaactc cctctgttgg 3900 ggagccaagt aggacctact aacaggctgt ctgagcctac ctagcgtact gggacagaaa 3960 tccttcgggt ggggtgtcct ggaacataat cagataatga taggggtggt agcatgccac 4020 ccccccccc 4029 //