ID U20220; SV 1; linear; genomic RNA; STD; VRL; 3361 BP. XX AC U20220; XX DT 25-JAN-1996 (Rel. 46, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 2) XX DE Cucumber mosaic virus 1a protein gene, complete cds. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3361 RX PUBMED; 7561763. RA McGarvey P., Tousignant M., Geletka L., Cellini F., Kaper J.M.; RT "The complete sequence of a cucumber mosaic virus from Ixora that is RT deficient in the replication of satellite RNAs"; RL J. Gen. Virol. 76(Pt 9):2257-2270(1995). XX RN [2] RP 1-3361 RA McGarvey P.B.; RT ; RL Submitted (23-JAN-1995) to the INSDC. RL Peter B. McGarvey, IBAMM, Thomas Jefferson University, 1020 Locust St., RL Philadelphia, PA 19107, USA XX DR MD5; 460292d5e928bfbde306b3cc7183994a. DR EuropePMC; PMC110906; 11044076. DR EuropePMC; PMC136033; 11884564. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3361 FT /organism="Cucumber mosaic virus" FT /chromosome="RNA 1" FT /host="Lycopersicon esculentum" FT /strain="Ixora" FT /mol_type="genomic RNA" FT /clone="pGemIx19" FT /db_xref="taxon:12305" FT CDS 96..3077 FT /codon_start=1 FT /product="1a protein" FT /function="putative RNA helicase and methyltransferase FT activities" FT /db_xref="GOA:Q66121" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q66121" FT /protein_id="AAC54620.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAAECDVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRSAFSETEDVTPLSGKLNSTVFSRVRKFKTMVAFDFINESTMSYVH FT DWENIRSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRYLTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGLAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKVLAAQKAEKLAEKLAQPVIEVSDRPEAPSPTPDDPADVCGKEQEVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGKWMRPVPEGIVYSVGFNEHGLGPKSDGELYIVNSECVVCNNES FT LSNVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMVVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPRGTHSKYTKW FT VSQSKVKRSVTSRAISSVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEHCGILNGDLIAEC FT IARA" XX SQ Sequence 3361 BP; 843 A; 736 C; 815 G; 967 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcctc tgtaaaacta ccctttgaaa 60 aacctctctt tctcaatctt ttctctgaaa ttcctatggc gacgtcctcg ttcaacatca 120 atgaattggt agcctcccac ggcgataaag gactactcgc gaccgcccta gttgataaga 180 cagctcatga gcagctcgag gagcaattac aacatcaacg taggggccgt aaggtctaca 240 tccggaatgt tttgggtgta aaggattccg aggtcatccg gaatcggtat ggaggaaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcttc aggtctgcgg caggacctcg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacataac gtacactgct 480 gttccccttg tttgggtatc cgcgataaaa tgcgccacgc ggaacgtttg atgaacatgc 540 gcaagattat cttgaacgat ccacaacagt tcgatggtcg acagccggac ttttgcactc 600 acccggctgc agaatgcgat gtacaagccc acttcgctat atctattcat ggaggttatg 660 atatgggctt tagaggactt tgtgaggcga tgaacgctca cggaaccact attttgaagg 720 gaacgatgat gttcgatggt gcgatgatgt ttgacgacca gggtgtaata cctgaactta 780 actgtcagtg gagaaagatt aggagtgctt tctctgaaac tgaagacgtc acgccgttgt 840 ctggtaagct taattccaca gtattttccc gcgtgcgtaa attcaagact atggtagctt 900 ttgattttat caatgagtct actatgtctt atgttcatga ttgggagaat ataagatctt 960 tccttacaga ccagacctac tcataccgag ggatgacata tggtatcgag cgttgtgtta 1020 tccacgccgg cattatgacg tacaagatca tcggtgtacc tgggatgtgt ccacccgaac 1080 tcattcgaca ttgcatttgg ttcccctcta taaaggatta tgttggctta aagattcccg 1140 cgtcacagga cttggttgaa tggaaaacag tgcggtattt aacgtcaaca ttacgtgaga 1200 cggaagagat tgctatgagg tgctacaatg ataagaaagc gtggatggag caatttaagg 1260 ttatcttagg tgttctatcc gcgaaatcat ctaccattgt tattaatggt atgtccatgc 1320 aatctggcga gcgtatagat attaacgatt atcattacat cggcctcgct attctcctcc 1380 acacaaaaat gaagtatgaa caattgggaa aaatgtatga tatgtggaat gcttcgagta 1440 tctcgaagtg gtttgcagcg ttgactcgtc cgttgcgtgt gtttttctct agcgttgttc 1500 atgcactgtt cccgactttg agaccgcgcg aggaaaagga attcctgatt aagctctcca 1560 cttttgtgac ttttaatgaa gagtgctcat ttgatggtgg agaggagtgg gacgtgatat 1620 catctgctgc atacgttgct acacaggctg ttaccgatgg gaaagttttg gctgcgcaga 1680 aagccgagaa gcttgctgag aagcttgcac aacccgtgat tgaggtatcg gacagacctg 1740 aggcgccatc tccaacgcct gatgatccag ctgatgtttg tggaaaggag caagaggttt 1800 cggagcttga ctctttatca gctcaaacac gttcccccat cactagagtt gctgaaaggg 1860 ctactgctat gttagagtat gccgcttatg agaaacagtt acatgacacc acagtgtcta 1920 acttgaaacg tatttggaac atggcgggtg gtgacgacaa gagaaactcc ctcgagggta 1980 acttgaagtt tgtctttgac acgtatttta ccgttgatcc catggtgaat attcatttct 2040 ccacgggtaa gtggatgcgt cctgtgcctg aaggaattgt ttactctgtc ggttttaatg 2100 aacacggatt aggtccgaag tctgatggag agctttacat tgtcaacagc gagtgtgtag 2160 tgtgcaataa tgagtctctc tctaatgtca ctcgttctct tcaagctcca actgggacta 2220 ttagtcaagt tgatggagtc gctggttgtg ggaaaaccac ggcaataaaa tccatttttg 2280 agccatccac tgacatggtc gttaccgcga acaagaaatc cgcccaagat gttcgtatgg 2340 cactgttcaa atcgtcggat tccaaagaag cctgcacctt cgttcgaact gccgattctg 2400 tcctacttaa tgaatgtccg actgttagta gggttttggt tgatgaggtc gtgctgcttc 2460 actttggtca attgtgtgct gtcatgtcta agctgaaggc tgtgcgagcc atatgtttcg 2520 gggattctga acagattgct ttttcttctc gcgatgcttc gtttgacatg cgtttctcta 2580 agattattcc tgatgaaact agtgatgcgg atactacttt ccgtagccca caagatgtcg 2640 taccgcttgt gcgtctaatg gctacgaagg ctcttccgag aggaactcat tcgaaataca 2700 ctaaatgggt ttctcaatct aaagtgaaaa gatctgttac gtctcgtgct atctccagtg 2760 tgacactggt tgatctggat tcctctaggt tctatatcac gatgactcag gctgacaagg 2820 cttcactgat ttcaagagcg aaggagatga acttaccaaa gactttctgg aacgaaagga 2880 ttaaaactgt gcatgagtct caaggtattt ctgaagacca cgttactttg gtgagattga 2940 agagtacaaa gtgtgacctg tttaaacagt tttcatattg tcttgttgcc ttgacaagac 3000 ataaggtcac cttccgctac gagcattgtg gtatattaaa cggcgattta atcgccgaat 3060 gtattgctcg tgcttaacgg ttccctcctt cgggcgggat ctgagttggc ggtaatctac 3120 aaaccgtctg aagtcactaa acgttatgcg ttaacggtga acgggttgtc catccagctt 3180 acggctaaaa tggtcagtcg tggagaaatc cacgccagca gacttacaag tctctgaggt 3240 gcctttgaaa ccatctccta ggtttcttcg gaaggacttc ggtccgtgta cttctagcac 3300 aagatgctag tttcagggta cgggcacccc cccatttatg ggggcctcct taaggagacc 3360 a 3361 //