ID   U20219; SV 1; linear; genomic RNA; STD; VRL; 2216 BP.
XX
AC   U20219;
XX
DT   25-JAN-1996 (Rel. 46, Created)
DT   04-MAR-2000 (Rel. 63, Last updated, Version 2)
XX
DE   Cucumber mosaic virus 3a protein and capsid protein genes, complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2216
RX   PUBMED; 7561763.
RA   McGarvey P., Tousignant M., Geletka L., Cellini F., Kaper J.M.;
RT   "The complete sequence of a cucumber mosaic virus from Ixora that is
RT   deficient in the replication of satellite RNAs";
RL   J. Gen. Virol. 76(Pt 9):2257-2270(1995).
XX
RN   [2]
RP   1-2216
RA   McGarvey P.B.;
RT   ;
RL   Submitted (23-JAN-1995) to the INSDC.
RL   Peter B. McGarvey, IBAMM, Thomas Jefferson University, 1020 Locust St.,
RL   Philadelphia, PA 19107, USA
XX
DR   MD5; 58308da57ac22dc43c8b404f4808401d.
DR   EuropePMC; PMC110906; 11044076.
DR   EuropePMC; PMC112760; 10400773.
DR   EuropePMC; PMC136033; 11884564.
DR   EuropePMC; PMC3550734; 23637513.
DR   EuropePMC; PMC3550809; 23730005.
DR   EuropePMC; PMC416521; 15163757.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2216
FT                   /organism="Cucumber mosaic virus"
FT                   /chromosome="RNA 3"
FT                   /host="Lycopersicon esculentum"
FT                   /strain="Ixora"
FT                   /mol_type="genomic RNA"
FT                   /clone="pNotIx63,pGemM2-5"
FT                   /db_xref="taxon:12305"
FT   CDS             122..961
FT                   /codon_start=1
FT                   /product="3a protein"
FT                   /function="putative movement protein"
FT                   /db_xref="GOA:Q66119"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q66119"
FT                   /protein_id="AAC54618.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDELQKLLFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDAGELSSKGYMSVTQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDRQCVTLHNHDLPALVSFQPTYDCPMESVGNRKRCFAVVIE
FT                   RHGYIEYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYVLTDAKINQNARSESEEIIVESPPIVIGSSSASRSEAFRPQVVNGL"
FT   CDS             1258..1914
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:Q66120"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q66120"
FT                   /protein_id="AAC54619.1"
FT                   /translation="MDKSESASAGRNRRRRPRRGSRSASSSSDANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVAEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVTAISAMFADGASPVLVYQYAASGIQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSRVLPV"
XX
SQ   Sequence 2216 BP; 514 A; 532 C; 532 G; 638 T; 0 other;
     gtaatcttac cacttgtgtg tgtgcgtgtg tgtgtgtgtc gcgtcgtgtc gggtcgtgtc        60
     gtccgcacat ttgagtcgtg ctgtccgcac attttctttc agtgtgttag attcccgagg       120
     catggctttc caaggtacca gtaggacttt aactcaacag tcctcagcgg ctacgtctga       180
     cgaacttcaa aagttattat ttagccctga agccattaag aaaatggcta ctgagtgtga       240
     cctaggccgg catcactgga tgcgcgctga taacgctatt tcagtccggc ccctcgttcc       300
     cgaagtaacc cacggtcgta ttgcttcttt ctttaagtct ggatatgatg ctggtgaatt       360
     gagttctaaa ggatacatga gtgtcaccca ggtattgtgt gctgttactc gaacagtttc       420
     cactgatgcc gaaggatctt tgagaattta cctagctgat ctaggcgaca aggagttatc       480
     tcctatagat agacaatgcg tcacattaca taatcatgac cttcccgctt tagtgtcttt       540
     ccagccgacg tacgattgtc ctatggaaag tgttgggaac cgtaagcggt gttttgctgt       600
     tgttatcgaa aggcatggtt atatcgagta taccggtacc acagctagcg tgtgtagtaa       660
     ttggcaagca cgattttctt ctaagaacaa taactacact catatcgcag ctgggaagac       720
     tctagtgctg ccattcaaca gattagctga gcaaacgaaa ccgtcagccg tcgctcgcct       780
     gttgaagtcg caactgaaca acatagaatc ttcgcaatac gttttaacgg atgcgaagat       840
     caatcagaat gcgcgcagtg agtccgagga aattattgtt gagagccctc ctatcgtaat       900
     cgggagttct tccgcgtccc gctccgaagc cttcagaccg caggtggtta acggtcttta       960
     gtgtcttcgt tgcgtattag agtataagta tatgtgagtc tgtacataat actataccta      1020
     tagtgtcctg tgtgagttga tacagtagac aactgtgacg cgatgtcgtg ttgagaagga      1080
     agcacatctg gttctagtaa acccacacat atcttttgag gtaaaattcc tctcggtccc      1140
     tgttgggctc cttactttat catagatgct tctccacgag attacgttat cgtctaccta      1200
     tccctaagaa gtaattgtgc tgtgttttct ctttgtgtgg tagaattgag tcgagttatg      1260
     gacaaatctg aatcagccag tgctggtcgt aaccgtcgac gtcgtccgcg tcgtggttcc      1320
     cgctccgcct cctcctcctc ggatgctaac tttagagtcc tgtcgcaaca gctttcgcga      1380
     ctcaataaga cgttagcagc tggtcgtcca actattaacc acccaacctt tgtgggtagt      1440
     gagcgttgta aacctgggta cacgttcact tcaattaccc tgaagccacc gaagatagac      1500
     cgcgggtctt attatggcaa aaggttgtta cttcctgatt cagtcgctga gttcgataag      1560
     aagcttgttt cgcgcattca aattcgagtt aatcctttgc cgaaatttga ttctaccgtg      1620
     tgggtgacag tccgtaaagt tcctgcctcc tcggacctat ccgttaccgc catctctgct      1680
     atgttcgcgg acggagcctc accggtactg gtttatcagt acgccgcatc tggaattcaa      1740
     gccaacaata aattgttgta cgatctttca gcgatgcgcg ctgatattgg cgacatgcga      1800
     aagtacgccg ttctcgtgta ttcaaaagac gatgcgctcg agacggatga gctggtactc      1860
     catgtcgaca ttgagcacca acgcattccc acgtctaggg tgctcccagt ttgaactcgt      1920
     gtttccagga ccctccctcc gacctttgtg gcgggagctg agttggcagt gtcgctataa      1980
     actgtctgaa gtcactaaac gctttgcggt gaacgggttg tccatccagc ttacggctaa      2040
     aatggtcagt cgtggagaaa tctacgccag tagacttaca agtctctgag gtgcccttga      2100
     aaccatctcc taggtttctt cggaaggact tcggtccgtg tacttctagc acaagatgct      2160
     agctttaggg tacgggcatc ccccccatta ttatgggggt cctttaaagg agacca          2216
//