ID U20218; SV 1; linear; genomic RNA; STD; VRL; 3060 BP. XX AC U20218; XX DT 25-JAN-1996 (Rel. 46, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 2) XX DE Cucumber mosaic virus 2a protein and 2b protein genes, complete cds. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3060 RX PUBMED; 7561763. RA McGarvey P., Tousignant M., Geletka L., Cellini F., Kaper J.M.; RT "The complete sequence of a cucumber mosaic virus from Ixora that is RT deficient in the replication of satellite RNAs"; RL J. Gen. Virol. 76(Pt 9):2257-2270(1995). XX RN [2] RP 1-3060 RA McGarvey P.B.; RT ; RL Submitted (23-JAN-1995) to the INSDC. RL Peter B. McGarvey, IBAMM, Thomas Jefferson University, 1020 Locust St., RL Philadelphia, PA 19107, USA XX DR MD5; 9ae8be84f253d7e7b7de105fef66ecb0. DR EuropePMC; PMC110906; 11044076. DR EuropePMC; PMC136033; 11884564. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3060 FT /organism="Cucumber mosaic virus" FT /chromosome="RNA 2" FT /host="Lycopersicon esculentum" FT /strain="Ixora" FT /mol_type="genomic RNA" FT /clone="pNotIX1" FT /db_xref="taxon:12305" FT CDS 97..2673 FT /codon_start=1 FT /product="2a protein" FT /function="putative polymerase" FT /db_xref="GOA:Q66117" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q66117" FT /protein_id="AAC54616.1" FT /translation="MAFPAPAFSLANLLNGTYGVDTPEEVERVRSEQREEAAAACRNYK FT PLPAVDVGASVTEDAHSLRTPDGAPSEEVSVEFVTYGAEDYLEKSDDELFVAFETMVKP FT MCIGQLWCPAFNKCSFISSIAMARALLLVPNTPNRTMKCFEDLVAAIYTKSDFYYDDEC FT EADDVQINISSRDVPGYSFEPWSRTSGFEPPPICEACNMIMYQCPCFDFNALKKSCAER FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYKQYPTPTVAIPPSLNRATDRVDIN FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLPRLSKAVAERFFIAYINGNSLATSN FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP FT ATITYHKKGITSQFSPLFTALFERFQRCLRERVILPVGKISSLEMSGFDVKNKYCLEID FT LSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFPGDDSLGFSVLPPVGDPSKFTTLFNMEA FT KVMEPAVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD FT RLKFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYKELYYSDRRQC FT ELINSFSCVELRIERSSFIKQRKKKDGIERRRNDKRRTPTSPHGGGEETETKVSQEEST FT GTMLQKSQRESAFKSQTIPFPTVLSSRRFGIDRDVPPRECGGIVRV" FT CDS 2432..2836 FT /codon_start=1 FT /product="2b protein" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:Q66118" FT /protein_id="AAC54617.1" FT /translation="MELNEGAMTNVELQLARMVEAKRQRRRSHRKNRRERCYKSPSERA FT HSNLRLFRFLPFYQVDGSELIEMYRHVNVAELSESEASCFALPAEDDHDLDDTDWFAGN FT EWRKERSEPLLPFSLQFEAGAELAVLLQTV" XX SQ Sequence 3060 BP; 763 A; 675 C; 719 G; 903 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcctc tgtaaaattc cctagacttt 60 tagtttcttt ctaaacttct agtttctgtc atttctatgg ctttccctgc ccccgctttc 120 tcactggcca atcttttgaa tggtacttac ggtgtagaca ctcccgagga agtggaacgt 180 gtgcgatctg agcaacgcga agaggctgct gcggcttgtc gtaattacaa gcccttaccc 240 gccgtggatg tcggcgcgag tgtcacagag gatgcgcatt ccctccgaac tccagacgga 300 gctccctctg aagaggtgtc tgttgagttt gttacttatg gtgctgaaga ttaccttgaa 360 aaatctgatg atgagctctt tgtcgctttt gagacgatgg tcaaacccat gtgtatcgga 420 cagttatggt gccctgcgtt taataaatgt tcctttattt ccagcatcgc tatggctaga 480 gctttgcttt tggtacctaa cacacccaac cgaaccatga agtgttttga agacctagtt 540 gcggctattt acactaaatc tgatttttac tacgatgatg agtgtgaagc cgatgacgtt 600 cagataaata tctcgtctcg cgatgtaccc ggttattctt tcgaaccgtg gtcccgaacg 660 tctggatttg aaccaccgcc catctgcgag gcgtgtaaca tgatcatgta ccagtgccca 720 tgttttgatt ttaatgcttt aaagaaatca tgcgctgaga ggactttcgc tgatgattat 780 gtcatcgagg gtttagatgg tgttgttgac aatgcaactt tgttgtctaa tttaggcccg 840 ttcttggtgc ctgtgaaatg tcaatacaag caatatccaa cacccaccgt cgcgattcct 900 ccgagtttaa atcgtgccac tgatcgtgtt gatatcaatt tagttcaatc catttgtgat 960 tccactctgc ccacgcatag caattatgac gactcttttc accaagtgtt cgtcgaaagt 1020 gcagattatt ctattgatct ggatcatgtc agacttcgac aatccgatct cattgcgaag 1080 attccagatt cagggcatat gataccggtt ctgaataccg ggagtggtca caagagagta 1140 ggtacaacga aggaggttct tacagcaatc aagaaacgta atgctgacgt tccggagctg 1200 ggtgattccg ttaacctgcc caggttgagt aaggctgtgg ctgagagatt cttcatcgcg 1260 tatattaatg gcaactcttt agccaccagc aactttgtca atgtcgttag taacttccat 1320 gattacatgg aaaaatggaa gtcttcaggc ctctcgtatg acgatctccc ggatcttcat 1380 gctgagaatt tgcagtttta tgatcacatg ataaaatctg atgtgaagcc tgtcgttagc 1440 gacacattga acattgacag accggttcca gctaccataa cgtatcataa gaaaggtata 1500 acctcccagt tctcaccgtt atttacagct ctatttgagc gtttccagag atgccttcga 1560 gaacgtgtta ttcttcctgt tggaaagatt tcatcccttg agatgtcggg atttgatgtt 1620 aagaacaaat attgtctcga gatcgatttg tccaagttcg ataaatctca gggtgaattt 1680 catttgatga ttcaggaaca tattttgaat ggtctagggt gcccggctcc gataacgaag 1740 tggtggtgtg atttccaccg attctcttat attagagacc gtagagctgg tgttggtatg 1800 cctatcagtt tccagagacg aactggtgac gcattcacct atttcggtaa cactattgtc 1860 accatggctg aatttgcatg gtgttacgac accgaccaat tcgaaaagct tctattccca 1920 ggcgatgact ctctaggatt ttctgtgctt cctcctgttg gtgatccgag taaattcacg 1980 actcttttca acatggaagc taaggtgatg gagccagcag tgccatatat ttgttcgaag 2040 ttcttactct ctgacgagtt cggtaatact ttttccgttc cagatccatt gcgcgaggtt 2100 cagcggttag gaacaaagaa aatcccctat tctgacaatg atgaattcct gtttgctcac 2160 ttcatgagct ttgttgatcg attgaagttt ctggaccgaa tgactcagtc ttgcatcgat 2220 caactttcac ttttcttcga gttgaaatac aggaagtctg gggcggaggc tgccttaatg 2280 ttaggcgcct ttaagaaata taccgctaat ttccagtcct acaaagaact ctattattca 2340 gatcgtcgtc agtgcgaatt gatcaattcg tttagttgtg tagagttgag gattgagcgt 2400 tcaagtttca ttaagcagcg aaagaagaaa gatggaattg aacgaaggcg caatgacaaa 2460 cgtcgaactc caactagccc gcatggtgga ggcgaagaga cagagacgaa ggtctcacag 2520 gaagaatcga cgggaacgat gttacaaaag tcccagcgag agagcgcatt caaatctcag 2580 actattccgt ttcctaccgt tctatcaagt agacggttcg gaattgatag agatgtaccg 2640 ccacgtgaat gtggcggaat tgtccgagtc tgaggcctct tgtttcgcgt tgccagcgga 2700 agatgaccat gatctcgacg atacggattg gttcgctggt aacgagtggc ggaaggagcg 2760 ttctgaaccc ctccttcctt tctccctcca gtttgaggcg ggagctgagt tggcagtatt 2820 gctacaaact gtctgaagtc actaaacgtt ttacggtgaa cgggttgtcc atccagctaa 2880 cggctaaaat ggtcagtcgt ggagaaatct acgccggaga tttacaagtc tctgaggtgc 2940 ctttgaaacc gtctcctagg tttcttcgga aggacttcgg tccgtgtact tctagcacaa 3000 gatgctagtt tcagggtacg ggcatccccc cacttagtgg gggcctttaa aaggagacca 3060 //