ID U19263; SV 1; linear; genomic DNA; STD; FUN; 6660 BP. XX AC U19263; XX DT 17-FEB-1995 (Rel. 42, Created) DT 14-FEB-2020 (Rel. 143, Last updated, Version 13) XX DE Saccharomyces paradoxus retrotransposon Ty5-6p associated with autonomously DE replicating sequence, complete sequence. XX KW . XX OS Saccharomyces paradoxus OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; OC Saccharomycetales; Saccharomycetaceae; Saccharomyces. XX RN [1] RP 1-6660 RX DOI; 10.1073/pnas.92.3.920. RX PUBMED; 7846079. RA Zou S., Wright D.A., Voytas D.F.; RT "The Saccharomyces Ty5 retrotransposon family is associated with origins of RT DNA replication at the telomeres and the silent mating locus HMR"; RL Proc. Natl. Acad. Sci. U.S.A. 92(3):920-924(1995). XX RN [2] RP 1-6660 RX PUBMED; 8598292. RA Zou S., Ke N., Kim J.M., Voytas D.F.; RT "The Saccharomyces retrotransposon Ty5 integrates preferentially into RT regions of silent chromatin at the telomeres and mating loci"; RL Genes Dev. 10(5):634-645(1996). XX RN [3] RP 1-6660 RA Zou S.; RT ; RL Submitted (29-DEC-1994) to the INSDC. RL Zoology & Genetics, Iowa State University, 2278 Molecular Biology Building, RL Ames, IA 50011, USA XX RN [4] RC Sequence update by submitter RP 1-6660 RA Zou S.; RT ; RL Submitted (11-FEB-1998) to the INSDC. RL Zoology & Genetics, Iowa State University, 2278 Molecular Biology Building, RL Ames, IA 50011, USA XX DR MD5; 77062617109603ee8f4f2634e08e8644. DR EuropePMC; PMC1383729; 12045146. DR StrainInfo; 198488; 0. XX CC On Feb 11, 1998 this sequence version replaced gi:1353242. XX FH Key Location/Qualifiers FH FT source 1..6660 FT /organism="Saccharomyces paradoxus" FT /strain="NRRL Y-17217" FT /mol_type="genomic DNA" FT /note="contains ICTV exemplar Saccharomyces cerevisiae Ty5 FT virus" FT /db_xref="taxon:27291" FT /type_material="type material of Saccharomyces paradoxus" FT misc_feature 753..763 FT /note="autonomously replicating consensus sequence" FT mobile_element 1228..6603 FT /mobile_element_type="retrotransposon:Ty5-6p" FT repeat_region 1228..1478 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="5' LTR for Ty5-6p" FT CDS 1441..6321 FT /codon_start=1 FT /product="unknown" FT /note="ORF" FT /db_xref="GOA:O42838" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR013103" FT /db_xref="InterPro:IPR025724" FT /db_xref="InterPro:IPR035179" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR039537" FT /db_xref="UniProtKB/TrEMBL:O42838" FT /protein_id="AAC02631.1" FT /translation="MTYKLDRNSLRQQVMSPESNASETIINLSNPNNYKQWLYGIETAA FT EYANEYMNEFVHTGDIQSMKRDYNLSANDESFVKTVFNSFLVKLYKKTIVGEAACEMNW FT ICDDSLGRVSAYDIFSHFEENYNEVTIGSRLTLIEDLPNISSKPVDEIASFLKTLFTML FT EDNSEEQDKKKRRDTNIALLLMTFLPELKESFHEKFGDSKALQLSQVIRFCKLKASSNS FT LSSVSDALVAQDRRSYQKKGNKGCMICGADHRLSNCSLLKRRIPEARIFKLYPNDKTNR FT SSSASVAIPDYETQGQTAGQITPKSWLCMLSSTVPATKSSDWICDTGCTSHMCHDRSMF FT SSFTRSSKKDFVRGVGGSIPIMGSGTVNIGTVQLNDVSYVPDLPVNLISIWKLCAKSNS FT SVTFTKEGVTVKSPDDVISTAGKLNNYLYIFDDLTPVTTFSSQNYFCSKTLDSSKMITS FT AAFHTVADKMLSQHISPTALPVKWHARMGHPGADIYNSLARTLRFPKFKTAEYTICPTC FT SLAKGIIKKGKVSLKKYTQPLQMVQADLCGGFRYQEFQSNKYFLTIRDAYSRYYSVIHL FT KSKADAPIKFMEWINETEQYFSSRGGFKVGSVRTDNGTEFVNKNLHAFFKSKGIEHQLT FT IPYHSYQNGAVERAHRTIEERTRCLLIGGRVPPSLWSEAVSCAVYLINRSPVVSKNNSI FT PYCRWFNIPAKDFGIAHLRIFGCTAYATLQPSLRDGKLAPTVISGVMVGYDSNHRGYRI FT YHPETGRIFVSSQVRFDEHMFPLADTEAVHVSHDFATSAIGGVSKYPETGSTVSAPKND FT GSDLANLPITVPKNVNQPAHKPNTSNISSSDDDEDISMEIEMEKPIPECNQDNLPNSGC FT PPTRIQHSNFESLPTVSTEDETNSSMEKTPERVPAALTYREIPKSSDSEYIPTCRNRTR FT RVKRTNKKPTRSREIEIYDISRPNVISSDNLPEVRSAKQRKTVSNTNDTVARTNRLPTV FT LRTLDSNNIDTLHVASTGEEVSIERLSSMALQEAKNNSARTNQANSLTDWFPVGAMPIP FT DQRYLSVHDGTYISDSQDVGDTDLTPAVTRLVTEENSIESPPSLDSSPPNTSFNAALTA FT IIHSTKKGNPKTYAQAMGRPDFQEWHNACLKELSAFKDHNTYKLVSLPKQRRALGSRWV FT FTIKDSGTYKARLVAQGHTQKAGIDYQETFAPVIRYDSVRLFLALASCLKLIVYQMDVD FT TAFLNSKMNEPVYVKQPPGFINESNPDYVWELYGGMYGLKQAPLLWNEHINNTLQKIGF FT RRHEGEHGLYFRSTSDGPIYIALYVDDLLVAAPSPKIYDRVKQKLTKLYSMKDLGKVDK FT FLGLNINQFSNGDITLSLQDYIAKAASESEINICKPTQTPLCDSKPLFETTSPHLKDIT FT PYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY FT RSGSLLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVSSTEAEYI FT TASETVMEIEWIQNLFEHLGQPLISSTLYVDNEPAIKLSKHPVFHTRTKHIALRYHKLR FT SAVAAGIITIEHVITKRQVADIFTKILPAESFKAHRAVMVREPETAK" FT repeat_region 6353..6603 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="3' LTR for Ty5-6p" XX SQ Sequence 6660 BP; 2118 A; 1444 C; 1273 G; 1825 T; 0 other; gatcttgctt ttgcccatta caacggatct tatgtaggat agggaaggtc acaccgaatt 60 tattctgaca aaacttattg atctcctcat ccttctcaaa ctcttgattt ccaaattgac 120 cgcaaggaaa ggcccgatca tcagaccatg tgatttgtat ttttcgtaca agtactctaa 180 ttccttatat tgtggtgtga atgcaccatg agatgctaca ttaactatca gtaccacttt 240 gttacgcaag gagctaaagg ggaatggatt tccatcttca tctatgggcg caaaagaata 300 aaattcttgc atcgaaactt atatagtgtt ccttggttga tgttccttgt gccgaattac 360 gattagagaa actcgctgtg cacaatacca cctacatgac taaattctgt ctgtacacta 420 cttactgtat tatataatca ctgtagatgt gttaactgta agcactctct gtagcaaagg 480 tgagtccgga tttaagcact tatggacgtg gcaaacgagg gatgactcgc ttaccctata 540 aaaataggga acagaagggg aaaaggaact acggagaagt tccacatgaa gacggtagtg 600 gggaatgtcg agggggatac tgtcgtatgt tgaatgtgat aacccaaaag catgatatgg 660 gtaatgtttc aagtacttgt ttcagaattg tttcaagtaa tgttttagac aaggaaaaca 720 tagagcagca aacctccgat ccgacagtac ttaagaaacc atagtttctg tgtacaagag 780 tagtacctat gtaattctta catttacata acatatagaa aggtccaata aacttacaac 840 attatgacat ataagctaga tcgtaattca ctacgtcaac aggttatgag ccctgagagc 900 aatgcttcag agaccataat taatctatct aatcccaaca attataaaca gtggaattac 960 gattagagaa actcgctgtg cacaatacca cctacatgac taaattctgt ctgtacacta 1020 cttactgtat tatataatca ctgtagatgt gttaactgta agcactctct gtagcaaagg 1080 tgagtccgga tttaagcact tatggacgtg gcaaacgagg gatgactcgc ttaccctata 1140 aaaataggga acagaagggg aaaaggaact acggagaagt tccacatgaa gacggtagtg 1200 gggaatgtcg agggggatac tgtcgtatgt tgaatgtgat aacccaaaag catgatatgg 1260 gtaatgtttc agtactgttt cagaattgtt tcagtaatgt tttagacaag gaaaacatag 1320 agcagcaaac ctccgatccg acagtactta agaaaccata gtttctgtgt acaagagtag 1380 tacctatgta attcttacat ttacataaca tatagaaagg tccaataaac ttacaacatt 1440 atgacatata agctagatcg taattcacta cgtcaacagg ttatgagccc tgagagcaat 1500 gcttcagaga ccataattaa tctatctaat cccaacaatt ataaacagtg gctgtacggt 1560 atcgagaccg ctgctgaata tgctaacgaa tatatgaacg aattcgttca taccggagat 1620 atccaatcaa tgaaaaggga ttacaatctc agcgcgaatg atgaaagctt tgtcaaaacc 1680 gtatttaaca gtttcctggt aaagctctac aagaaaacta tcgtgggtga agctgcatgt 1740 gaaatgaact ggatatgtga tgattcactt ggaagggtct ctgcttatga tattttctcg 1800 cacttcgaag aaaactataa tgaagtcact attggatcca ggcttactct tatagaggac 1860 ttaccaaata tatcctccaa gcctgtagat gaaatcgctt cctttttgaa aaccctattc 1920 acaatgcttg aagacaatag cgaagaacag gacaaaaaga aaagacgcga taccaatatc 1980 gcgttgctat taatgacctt cttacccgag ttaaaggaat cattccacga gaaattcggt 2040 gactctaaag ctcttcagct gtcacaagtc attagattct gtaaattaaa ggcgtcatcg 2100 aattcattat cttcagtctc agatgcattg gttgcacaag acagaagaag ctatcaaaag 2160 aaaggaaata agggatgtat gatttgtggg gctgatcatc gcttaagcaa ctgttctctg 2220 cttaaaagaa gaataccaga agccagaatc tttaaattat atcctaatga caagacgaat 2280 agatcttcat ctgctagtgt tgcgattcct gactatgaaa cgcaaggcca aacagcagga 2340 cagataacac caaagtcctg gctctgtatg ttatcttcga ccgtcccagc taccaaatcc 2400 tcagattgga tttgtgacac aggatgtact tcacacatgt gccacgaccg ttctatgttc 2460 tcatcattta ctagatcctc taagaaagac tttgtcagag gagtcggcgg ttccataccc 2520 atcatgggct ccgggactgt aaacatcggc actgttcaat taaatgacgt atcctacgtc 2580 cctgatttac cagtcaacct aatatccatt tggaaactat gtgctaaatc caactcttct 2640 gttacgttca caaaagaggg tgtcactgtg aaatcacctg atgacgtgat ttctacggct 2700 gggaagttaa acaattatct gtacattttc gatgatctta cgcccgtaac taccttctct 2760 tcgcaaaatt acttctgctc taaaacattg gattcatcta aaatgataac ttccgcagcg 2820 tttcataccg ttgcagataa aatgttgtcg caacacattt ctcccactgc tctcccggta 2880 aaatggcatg ctcgtatggg ccatcccgga gcagatattt acaattcctt ggctagaact 2940 ctgcgttttc caaaatttaa gacggctgaa tacactattt gtcctacctg ctcactagca 3000 aaaggaatca tcaaaaaggg taaagtctcg ctcaaaaaat atacccaacc tcttcaaatg 3060 gtacaggctg atctctgtgg tgggtttcgc taccaagagt ttcagtcaaa taaatatttt 3120 cttactatcc gtgatgccta tagtcgctac tactctgtaa tacatttaaa atccaaagca 3180 gacgctccga taaaattcat ggaatggatc aacgaaaccg aacaatactt tagctcccgg 3240 ggtggattca aagtcggatc tgttcgtaca gacaatggta cagaattcgt aaataaaaat 3300 cttcatgcgt tttttaaatc taaaggaata gagcatcagt taactattcc atatcatagt 3360 tatcaaaatg gtgctgttga acgtgcacat cgtaccatcg aagaacgcac tcgttgtctc 3420 cttatcgggg ggcgtgttcc tccgtccttg tggtctgaag ctgtttcttg cgcagtctat 3480 ttaatcaata ggtcccctgt agtgtccaaa aataacagta tcccatactg ccggtggttc 3540 aacatccccg caaaagattt cggtatcgca catcttcgaa tttttggatg tacagcatac 3600 gcaaccttac aacctagtct tcgagacggc aaacttgccc caactgtcat atctggtgtt 3660 atggttggct atgactctaa ccatcgagga tacaggattt atcatcccga aactggccgc 3720 atctttgtga gcagtcaagt tcgatttgac gaacacatgt ttcctcttgc tgatacagag 3780 gcagttcacg tctctcacga ctttgccact tccgctattg ggggggtgtc caaatatcct 3840 gaaacagggt caaccgtctc tgctccaaag aacgacggat ctgacttggc aaatttgcca 3900 ataactgttc ccaaaaatgt aaatcaacca gcacataaac ctaataccag taacatctct 3960 tcctctgatg atgatgagga tatttcaatg gaaatcgaaa tggaaaaacc tatccctgag 4020 tgtaaccaag acaacttacc aaactccgga tgtccaccaa caaggataca acattctaac 4080 tttgaatcct taccaaccgt gtctaccgaa gacgaaacta attcttctat ggagaaaact 4140 cctgaaagag ttccagcggc actaacttat cgagaaattc caaaatcatc cgattcagaa 4200 tatattccga catgccgaaa tagaactaga cgtgttaaaa gaactaataa gaaaccaacg 4260 cgatcccgcg aaatagaaat atatgatata tcacgtccaa acgtaatatc gagtgacaac 4320 ttacctgaag ttagaagtgc caagcaaaga aagacggtgt ccaatacaaa tgatactgta 4380 gcaaggacaa atagacttcc aaccgtgcta cgaactctag actcaaacaa cattgacacg 4440 ctgcatgttg ccagtactgg tgaagaagtg tccatcgaaa gactttcaag catggctctt 4500 caggaagcga agaacaattc cgccagaact aatcaagcta attctcttac tgattggttt 4560 ccagtaggcg caatgccgat acctgaccag aggtatctat ccgttcacga tggaacatat 4620 atcagcgact cacaagatgt gggtgatact gacctcactc ctgctgtaac caggctagtt 4680 actgaagaga attcaatcga atctcctcca tcgttggatt catcgcctcc aaatacctca 4740 tttaacgcgg ctctaactgc tattatccat agcacaaaaa aaggaaaccc gaaaacctat 4800 gcccaagcaa tgggaaggcc tgactttcaa gaatggcaca acgcatgcct caaggaactt 4860 tccgcgttca aagatcacaa tacgtacaaa ttggtgtctc ttccaaagca aagaagagct 4920 cttggatcgc gctgggtatt cacaataaaa gactccggga cgtacaaagc tcgccttgtc 4980 gcccaaggac atactcaaaa ggctggtatt gactatcaag aaacttttgc accagtcatt 5040 cgatatgact ctgttagatt atttctggcc cttgctagct gcctcaaact aatagtatat 5100 cagatggacg ttgacaccgc gtttctaaac tcaaaaatga atgagccggt atacgtaaaa 5160 caaccacccg gatttattaa tgaaagtaat cccgactatg tatgggaact atacggcggt 5220 atgtatggac tcaagcaagc cccattacta tggaacgaac atatcaacaa tactcttcaa 5280 aagattggtt ttcgtcgaca tgaaggcgaa catggcttat actttcgttc cacatctgat 5340 ggtcccatct acattgccct atacgtagac gacttacttg ttgctgctcc ctctccgaaa 5400 atatatgaca gggttaagca gaaactaacg aagttatact caatgaagga tctaggtaaa 5460 gttgacaaat tcctcggtct taacattaat caattttcaa atggagacat cactctctca 5520 cttcaagact atattgctaa agctgcatct gaaagcgaaa taaacatatg taagcctaca 5580 cagactccgc tctgtgactc aaagcctctt ttcgaaacaa cttccccgca cctaaaggac 5640 atcactcctt atcagagcat agttggacag cttctctttt gtgcaaatac tggtcgtcct 5700 gacatatctt atccggtctc actactctcc aggtttcttc gcgaacctcg cgcaatccat 5760 ttggagtctg ctcgacgagt tctacggtac ctatatacca ccagaagtat gtgtctcaag 5820 tatcgttctg gatctctgtt ggcactaact gtatattgtg atgcatctca tggagcaatt 5880 cacgatctcc cacactctac tggggggtac gtgactctac ttgctggtgc tccagttacg 5940 tggtcatcaa agaaactcaa gggtgtgatt cctgtatcat ctactgaggc agaatacatt 6000 actgcaagtg aaactgtcat ggagatagaa tggattcaaa acttgtttga acacttaggc 6060 cagccactta tctcatcaac attatacgta gataatgaac ctgctataaa actatctaaa 6120 catcctgtat ttcacacgag aacaaaacac attgccttga gatatcacaa gctaagaagt 6180 gcagtggcag caggcataat taccatagag catgttatta caaagagaca agttgctgac 6240 atatttacaa aaatccttcc agcagaatca ttcaaagcac atagggctgt catggtgagg 6300 gaaccagaaa ctgcaaaata accactctca tgcgtattca gttatggggg gatgttgaat 6360 gtgataaccc aaaagcatga tatgggtaat gtttcagtac tgtttcagaa ttgtttcagt 6420 aatgttttag acaaggaaaa catagagcag caaacctccg atccgacagt acttaagaaa 6480 ccatagtttc tgtgtacaag agtagtacct atgtaattct tacatttaca taacatatag 6540 aaaggtccaa taaacttaca acattatgac atataagcta gatcgtaatt cactacgtca 6600 acatcgtaca cttaaaatat atgtatgtat ctgcactatt tagtcttgtt ttattgggtg 6660 //