ID   U16731; SV 1; circular; genomic DNA; STD; VRL; 1022 BP.
XX
AC   U16731;
XX
DT   17-NOV-1994 (Rel. 41, Created)
DT   21-FEB-2014 (Rel. 119, Last updated, Version 5)
XX
DE   Subterranean clover stunt C2 alphasatellite, complete sequence.
XX
KW   .
XX
OS   Subterranean clover stunt C2 alphasatellite
OC   Viruses; Alphasatellitidae; Nanoalphasatellitinae;
OC   unclassified Nanoalphasatellitinae.
XX
RN   [1]
RP   1-1022
RX   DOI; 10.1006/viro.1995.1094.
RX   PUBMED; 7886939.
RA   Boevink P., Chu P.W., Keese P.;
RT   "Sequence of subterranean clover stunt virus DNA: affinities with the
RT   geminiviruses";
RL   Virology 207(2):354-361(1995).
XX
RN   [2]
RP   1-1022
RA   Boevink P.C.;
RT   ;
RL   Submitted (28-OCT-1994) to the INSDC.
RL   Petra C. Boevink, C.S.I.R.O. Division of Plant Industry, GPO Box 1600,
RL   Canberra ACT 2601, Australia
XX
DR   MD5; 94dbaa15faa91d2372890d0e45803d8b.
DR   EuropePMC; PMC6410307; 30720711.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1022
FT                   /organism="Subterranean clover stunt C2 alphasatellite"
FT                   /chromosome="component 2"
FT                   /host="Trifolium subterraneum L."
FT                   /lab_host="Trifolium subterraneum cv. Mt. Barker"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:1458458"
FT   stem_loop       join(1011..1022,1..19)
FT                   /note="region of sequence and predicted structural
FT                   similarity with the conserved stem-loop sequence in the
FT                   intergenic region of the geminiviruses, which is the origin
FT                   of replication"
FT   gene            82..924
FT                   /gene="SCSV2"
FT   CDS             82..924
FT                   /codon_start=1
FT                   /gene="SCSV2"
FT                   /product="possible replication asociated protein"
FT                   /db_xref="GOA:Q87009"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q87009"
FT                   /protein_id="AAA68018.1"
FT                   /translation="MARRYCFTLNYATEIERETFLSLFSQDELNYFVVGDETATTGQKH
FT                   LQGFVSFKNKIRLGGLKKKFGNRAHWEIARGSDSQNRDYCCKETLISEIGIPVMKGSNK
FT                   RKTMEIYEEDPEEMQLKDPDTALRCKAKKLKEEYCSCYDFQKLRPWQIELHAALMAEPD
FT                   DRSIIWVYGSDGGEGKTSFAKELIRYGWFYTAGGKTQDVLYMYAQDPERNIAFDVPRCS
FT                   SEMMNYQAMEMLKNRVFASTKYRPVDLCIRKLVHLIVFANVAPDPTRISEDRLVIINC"
XX
SQ   Sequence 1022 BP; 307 A; 185 C; 245 G; 285 T; 0 other;
     tagtattacc cgaccttgcc acacctcctt ggaacacttt ctctctctag aaagtgtgag        60
     actttctctc tctaagctta tatggctaga aggtactgtt ttacattaaa ttacgctact       120
     gagatagaga gagaaacatt cctctccctc ttctctcaag acgaattaaa ctatttcgtt       180
     gtcggcgacg aaactgcaac tactggacag aaacacctcc agggatttgt atcgttcaag       240
     aacaaaattc gtcttggtgg attgaagaag aaatttggta atcgagctca ctgggaaatt       300
     gcgagaggca gcgattctca gaatcgcgat tattgctgta aagaaaccct aatttctgaa       360
     attgggattc cggtcatgaa gggttcgaac aagcggaaga cgatggagat ttatgaagag       420
     gatcccgaag aaatgcaatt gaaggatcca gatactgctc ttcgatgtaa ggcgaagaaa       480
     ttgaaagagg aatattgttc ctgttatgat tttcagaaac tccgtccatg gcaaattgag       540
     cttcacgcgg ctttaatggc ggaaccagat gatcggagta tcatctgggt ctatggttca       600
     gacggaggag aaggaaagac gagcttcgcg aaggaattaa tcaggtatgg atggttttat       660
     acagccggag ggaagaccca ggacgtatta tatatgtatg ctcaagaccc agagaggaat       720
     attgcgtttg atgttcccag gtgttcttcg gagatgatga actatcaggc gatggagatg       780
     ttgaagaaca gagtttttgc aagtacaaaa tataggcctg tagatctttg tattaggaag       840
     ttagttcatt taattgtgtt tgccaacgtg gcacctgacc ccacgcgcat aagtgaggac       900
     agacttgtaa ttatcaattg ttgaataaaa gaatatatat tattgtttta atttaattcc       960
     gcgaagcggt agccggtcat aacactgttg cccttggaac actatatata gcaaggtcgg      1020
     ct                                                                     1022
//