ID U15441; SV 1; linear; genomic RNA; STD; VRL; 7193 BP. XX AC U15441; U05242; XX DT 17-FEB-1995 (Rel. 42, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 7) XX DE Lettuce infectious yellows virus RNA 2 heat-shock protein, coat protein, DE and duplicated coat protein genes, complete cds. XX KW . XX OS Lettuce infectious yellows virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 4214-5004 RX PUBMED; 8021583. RA Klaassen V.A., Boeshore M., Dolja V.V., Falk B.W.; RT "Partial characterization of the lettuce infectious yellows virus genomic RT RNAs, identification of the coat protein gene and comparison of its amino RT acid sequence with those of other filamentous RNA plant viruses"; RL J. Gen. Virol. 75(Pt 7):1525-1533(1994). XX RN [2] RP 1-7193 RX DOI; 10.1006/viro.1995.1133. RX PUBMED; 11831736. RA Klaassen V.A., Boeshore M.L., Koonin E.V., Tian T., Falk B.W.; RT "Genome structure and phylogenetic analysis of lettuce infectious yellows RT virus, a whitefly-transmitted, bipartite closterovirus"; RL Virology 208(1):99-110(1995). XX RN [3] RP 1-7193 RA Klaassen V.A.; RT ; RL Submitted (03-OCT-1994) to the INSDC. RL Vicki A. Klaassen, Plant Pathology, University of California at Davis, 570 RL Hutchison Hall, Davis, CA 95616, USA XX DR MD5; 4170fede75e5117c4271c401a76300e9. DR EuropePMC; PMC2786829; 19793810. DR EuropePMC; PMC5977209; 29695039. DR UniProtKB/Swiss-Prot; P0C790; P9_LIYV9. XX CC On Feb 1, 1995 this sequence version replaced gi:450858. XX FH Key Location/Qualifiers FH FT source 1..7193 FT /organism="Lettuce infectious yellows virus" FT /chromosome="RNA 2" FT /lab_host="Nicotiana clevelandii" FT /isolate="92" FT /mol_type="genomic RNA" FT /db_xref="taxon:31713" FT CDS 693..2357 FT /codon_start=1 FT /product="heat-shock protein" FT /db_xref="GOA:Q83047" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/Swiss-Prot:Q83047" FT /protein_id="AAA61800.1" FT /translation="MRDCKVGLDFGTTFSTVSTLVNNSMYVLRLGDSAYIPTCIAITPG FT GEAIIGGAAEVLSGDDTPHCFFYDLKRWVGVDDNTFKFAMNKIRPKYVAELVEGEVYLT FT GINKGFSIKLSVKQLIKAYIETIVRLLASSYSLRVIDLNQSVPADYKNAQRLAARSVLK FT ALSFPCRRIINEPSAAAVYCVSRYPNYNYFLVYDFGGGTFDVSLIGKYKSYVTVIDTEG FT DSFLGGRDIDKSIEDYLVGKYNIKKVIPATYLALIKEECNNTNKSIFTILFDDGSVQVV FT EFSKSELEKCVRPFVERSIKLINDVVVRNKLTSGVIYMVGGSSLLQPVQDMVRSYASTK FT GLTLVADQDMRSAVSYGCSVLHKLEDNKEIVYIDCNSHPLSDISFNCDPEPIIRKPMSI FT PYTHTVKMRHDRPLKTIVNIYEGSNLFMPENDWLISSNINTTDFAKVGEEYSKVYEYDI FT DGIITLKIRNEVTGKMFTLPNSFTKSDNIKPITFKLTQLSNTDDLATLTSLLGYHDKNF FT ERFYGLFNVPTILIKEIDKLGGFKTLYRRLKSMNANF" FT CDS 2449..3993 FT /codon_start=1 FT /product="unknown" FT /db_xref="GOA:Q83048" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/Swiss-Prot:Q83048" FT /protein_id="AAA61801.1" FT /translation="MLNDRIAVTCFQTLLKKSNVKHEMEQTNNYIVNNLADINRNTFPA FT LAGSVRIDFNSDYYISGGQIVVSPKDSNAYVKLLIVYLKYCYINYSAKTKYPPQSLLAV FT LDYDSFKAKWVKYLDKSLTDYLDDNKTEGCSFTEQQVVEKYPQVDSLVAKILYRVCNSL FT GKLLDLKDFENKNISGFEINTAQDSPTVADDNESNDFFRECVNDQRYYSSLSGSKLGKA FT KLEANAYIFKILLKSASGEFDIDRLSRNPLAISKFMNLYTNHVTDSETFKSKFEALKSI FT KTPFASFIKKAFGIRLNFEDSKIFYALPKERQSDVLSDDMMVESIVRDAASFTVVSDNN FT YLPERVDRFVTQLLLELFPKTKASFPNKIMFGFLHYFALSTTNSKRFNDTQESTIEIEG FT ETLKISLKFITSYLRNAIQSQHPDYADSNIVRLWCNKRSNLALGYFKSRNIQLYLYSKY FT PRLLNYMRFDYFKGLDMGKLTDEERLSIQTLRCITEDRSEGTLATHNDLNSWILRP" FT CDS 4221..4970 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q83049" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/Swiss-Prot:Q83049" FT /protein_id="AAA61802.1" FT /translation="MDTDGDNDVFGSGNDTRNNDDKKKEEMKQNISDNSQIISTRDHEA FT DIIGSISKEDLSKIVVRVDRHDALSANDVQSFREAMINFMRDKDPNRNQPSDKLIIAME FT VGVYQMVINLGTSAKLGNANNLEFTIAYDQETRTYKVADFVNYMQSRMRNSPNVVRQYA FT RAMEKTINNIRSAGIINSNGVLAAKHGVLASYRNSYSDFAVGFGNDTTDAQLTSLMLAR FT KQALCKGEGGSVEHYNTMQLANLKHPC" FT CDS 4964..6322 FT /codon_start=1 FT /product="duplicated coat protein" FT /db_xref="GOA:Q83050" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/Swiss-Prot:Q83050" FT /protein_id="AAA61803.1" FT /translation="MLEAECDEVELTSRDVGDYLMFKTRITDNFTGDLTLNINTSNLIK FT FKTCSFFICYGDDKDRYELGWTSTSTSRSIFQHYKDGKYIRDFRIQDPFPILSGSTFPV FT VISKIIANRVAFRMSRRLNNVIVDKLKNNIIEFLFVVYLDVDTGKIKPNTILKNLDLSS FT LFIVFSNNGNNKINLPYEIELQTKDRGIVYTKMGNPISYNLFNKFEDLLDIETKGVDKP FT EDKPKPVFDDKGKQPTDTVPPVDNGKPDISKPGEKQGDIDIASKFNNIVMAKLKAQSSS FT DPLTKKQCDQLMLSLIKWFEKFGITKDNARLLIFQFGISFSTSKENLNNITNNIVVEND FT KGGFVKILKIDYLNKLYGSIPESHTHNLERVLLRHYAQEILILLRSKVLEWPRKLARNK FT GIFEQYAYMACDFFDTAELELTEAETTALTTVKSWTMNHYKKKRQIVNSSQLE" FT CDS 6319..7002 FT /codon_start=1 FT /product="unknown" FT /db_xref="GOA:Q83051" FT /db_xref="InterPro:IPR009985" FT /db_xref="UniProtKB/Swiss-Prot:Q83051" FT /protein_id="AAA61804.1" FT /translation="MNNFPEIFDDESTCDYDKEIDHQELSDTFWCLMDFISSKHGKSVA FT DINSGMNTLINIRKSLNGSGKVVSITDSYNKTYFHSQRGLTNVDSRINIDILKIDFISI FT IDDLQIIFRGLIYKDKGFLDSADLLDLDKKTTTRKFQEYFNILKIKIIEKIGMTKTFHF FT NIDFRNTISPLDKQRKCSISSSHKKTNRLNDLNNYITYLNDNIVLTFRWKGVGFGGLSL FT NDIKI" XX SQ Sequence 7193 BP; 2544 A; 1066 C; 1367 G; 2216 T; 0 other; ggtaatcaca attaccattg ggcgaaggcc aggtgtgccg taaacctaaa atatgattgt 60 gttacggatc ctactctttt gagtagttac attatgttat gttaagatcc ttgcgtctac 120 tcttggagaa tttcgatggc acttgagtga cgtaagttac tttttctccc taaaatccaa 180 aatcccaaaa atccaaattt tagttaatag cagtagctgt cgcaaaccgt accctaccct 240 aattaaaact agactatgct gcgaatacta agagcggatt aaatctgctc gcttagagaa 300 ctctcaggtc ttctctagta taggtcatgt cgatattatt attttttctt atgtccatat 360 tagtatggtt tatttttacc attttaaagt tattatttgt aaatactgat agtgaagtaa 420 atataccgaa taaaagtaga ttttagaagt ttccataatt tgtaataagt attttatcaa 480 taaaaagtag agtgataagt ctgttaataa aattttatta atgtgcaggt atattgtaaa 540 accaaaaata aaaacagttt ctttaagtta gaataaaagt ttttctaaaa tttaaaaatt 600 tatgtttatt ttttatttgt cgatatcaag ttcattgact gcatttgtgt taatagaata 660 aactttattt gttgttaagt ttcaaattca aaatgagaga ttgtaaggta ggcttagatt 720 tcggtactac ttttagtact gttagtactc ttgtgaataa cagtatgtat gtgttgagat 780 taggtgattc ggcttacata ccaacgtgta ttgctatcac acctggaggt gaggccatca 840 taggaggtgc tgcagaagta ctttcgggag atgatacacc tcactgcttt ttctatgatt 900 tgaagaggtg ggttggtgtt gatgacaata cattcaaatt tgctatgaat aaaattagac 960 ccaaatacgt agcagagttg gttgaaggtg aggtttattt aaccggcatc aataaaggat 1020 tttctataaa gctgtctgtt aagcaattaa taaaggctta tatagaaact attgttaggt 1080 tgttagccag ctcatattct ttgagagtca tagatttaaa tcagtctgtt ccggccgatt 1140 ataagaatgc tcagagatta gctgcaagat cggtgttgaa agcgttatca tttccttgtc 1200 gtaggattat aaatgaacca tcagcagcag cagtctactg tgtgtcaagg tatcctaatt 1260 ataactattt cttagtttat gattttggag gaggtacctt tgatgtgtcg ctcataggta 1320 aatataagtc ttatgtcact gttatagata ccgaaggaga ctcgttctta ggcggtagag 1380 atatagacaa gagtatagaa gactatctag tgggcaaata taatataaag aaagtcattc 1440 cagctactta tttagcttta ataaaagaag agtgtaataa taccaataag agtattttta 1500 cgatactgtt tgatgacgga tctgttcaag ttgtggaatt ctctaagagt gaattagaga 1560 aatgcgttcg tccatttgtc gaaagatcga tcaaacttat aaatgatgtg gtggtacgaa 1620 acaagttgac atcgggagtc atttatatgg ttggaggttc atctctatta caaccagtac 1680 aagatatggt gaggtcttac gcgtcgacta agggattaac cttagttgca gatcaagata 1740 tgagaagcgc agtgtcttac ggttgttcgg ttttgcataa gttggaagac aataaggaga 1800 tcgtttatat agattgcaat tcgcatccgt tatcggacat ctcgttcaat tgtgatccag 1860 aacccatcat acgaaaaccg atgtcaatac cttacactca caccgttaag atgcgacatg 1920 accgtccttt aaaaacgata gtgaatatat atgaaggatc aaatctcttc atgcctgaaa 1980 atgattggtt gatatcttcc aatatcaata caacagattt tgctaaagta ggagaagagt 2040 atagtaaggt ctacgaatat gatattgacg gtatcataac cctaaaaata aggaatgaag 2100 tcactgggaa aatgttcaca ttaccgaact cgttcactaa gagtgataac ataaaaccca 2160 tcacttttaa attaactcaa ttgtcaaaca ctgatgactt agcgacgttg acgtctctcc 2220 taggttatca cgacaaaaac tttgagaggt tttacgggtt atttaatgtt ccaacaatat 2280 tgatcaagga aatagacaaa ttgggcggat ttaaaacttt gtatcgtcgt ctcaaaagta 2340 tgaatgctaa tttttaaagg aggttgtttt cgttagagtc aatttaattt aaagtgagaa 2400 gatcagttaa aagaaactcg acaaacataa caccaaaagt cagttaaaat gttgaatgac 2460 agaattgctg taacatgctt tcaaacgcta ctgaaaaagt cgaatgttaa gcatgaaatg 2520 gagcaaacca acaattatat agttaacaat cttgctgaca taaatcgtaa tacgttccca 2580 gcactagcgg ggtcggttag gattgatttc aactcagatt attatattag tggtgggcaa 2640 atagtagtct ctcccaaaga cagtaatgcc tatgtgaaac ttttgatcgt ctatttgaag 2700 tattgctaca taaattactc agcaaaaaca aaatatccac ctcagagttt attggcagtg 2760 ttagattacg attctttcaa ggcaaaatgg gtgaaatatc tagataaaag tttaactgat 2820 tatttagatg ataacaagac cgaaggttgt tcatttacag aacaacaggt agtagaaaaa 2880 tatcctcaag ttgactcgtt ggtcgcaaag atattgtatc gtgtttgcaa ttcgttaggt 2940 aaactgttgg atttgaaaga cttcgaaaac aaaaacattt ccgggtttga gataaacaca 3000 gctcaagatt cacctacagt agctgatgac aatgaatcaa acgatttctt cagggaatgt 3060 gtgaacgatc aacgttatta ttcatcatta tcaggtagta agttgggtaa ggctaaactg 3120 gaagctaacg catatatctt caaaatatta cttaaatcag ctagtggaga atttgacata 3180 gatagactgt caagaaatcc tttagcgatt agtaaattta tgaatttata tacaaatcat 3240 gttacagaca gtgagacctt caaaagtaaa ttcgaagctc ttaaaagcat caaaactcca 3300 tttgctagtt tcataaagaa agcatttggt ataagattga actttgagga tagtaaaatc 3360 ttttacgctc tccctaaaga aagacaatca gatgtgttga gcgatgacat gatggtagaa 3420 agtatagtga gagatgcagc aagtttcaca gtagtttctg acaacaatta cttacctgaa 3480 agagtagata gattcgtaac acaattacta ttagaattat ttccaaagac taaagcaagt 3540 tttccaaata aaataatgtt tggttttctt cattattttg ctttgtctac tactaattct 3600 aagaggttta atgatactca agagtctact atagagatag aaggtgagac attaaagata 3660 tcattaaaat ttattacttc atatttgaga aatgccattc aatctcaaca tccagattac 3720 gccgatagta atatagtgag actttggtgt aataaacgta gcaacttggc tttgggttat 3780 tttaagtcta gaaacattca attgtattta tattcaaaat atcctaggtt gcttaattat 3840 atgaggtttg attatttcaa agggttagat atgggtaaac taactgatga agagagatta 3900 tctatacaaa ctctccggtg catcacggaa gataggagtg agggtacatt ggctactcac 3960 aatgatttaa attcatggat actaagacct taatagacaa gtataacata gaaaacttca 4020 ctaattacat taacttcatc attagaaatc atcaggcagg gaaaggtaac ttgaggtttc 4080 tagtcaattt attaaaaact acaggagggt caaatttgaa ggagttagac atcaatccag 4140 tcgagatcga aaacttcaac attgacattt acctagattt ccttgagttc tgtttagatt 4200 caaaatttat attttaagat atggatacag atggagataa tgatgtgttt ggatcgggaa 4260 acgataccag gaataatgat gataagaaga aagaggaaat gaaacaaaac atttctgaca 4320 attctcaaat catatcaacc agggatcatg aagctgacat cattggaagt atatcgaaag 4380 aggatttgtc caaaatcgtt gtacgcgtcg acaggcacga tgctctgagt gctaatgatg 4440 ttcaaagttt tagagaagct atgataaact tcatgcgaga caaagacccc aacagaaatc 4500 aacctagtga caaattgatt attgctatgg aagttggagt ttatcaaatg gtcataaatt 4560 tgggcacttc ggctaaattg ggtaatgcta acaatttaga atttacgata gcttacgacc 4620 aggaaactag gacatataag gtcgcagatt ttgtgaatta tatgcagtct agaatgagga 4680 acagtccaaa tgttgttagg caatatgcaa gagcaatgga aaagacaatt aacaacataa 4740 ggagtgctgg aatcataaac agcaatggag ttttggcagc gaaacatggt gtgttggcat 4800 cttacagaaa ctcttacagc gactttgctg ttggttttgg taacgacacc actgatgctc 4860 aactcacttc gctaatgtta gctagaaaac aagcattatg caaaggtgaa ggtggttcag 4920 tcgagcatta caatactatg cagttagcta accttaaaca tccatgttag aggcggaatg 4980 tgatgaagta gaactaacct ccagagatgt cggagattat ttgatgttca aaacgagaat 5040 aaccgataat ttcactggag atttaacctt gaatataaac acctcgaact taatcaaatt 5100 caaaacttgt agtttcttta tatgttatgg agacgacaag gataggtatg aattgggttg 5160 gacttcaaca tctacatcta gaagtatttt tcaacattat aaggatggta aatacattcg 5220 agattttaga atacaagatc catttccaat tctatcaggt tcaacatttc cagtagtgat 5280 ttctaaaata atagcgaata gagttgcctt tcgtatgagt agaagattaa ataatgttat 5340 tgttgataag cttaagaata acattataga gtttctattt gtagtatatt tagatgtgga 5400 tactgggaag attaaaccaa acacaatact caaaaattta gatttgtcca gtctttttat 5460 cgttttcagt aacaacggaa acaataaaat caatctacca tatgagatag agctacagac 5520 taaagataga ggcattgttt acacaaaaat gggtaatcct atatcttaca acctcttcaa 5580 taagtttgaa gatttattag acatagaaac caaaggtgtc gataaacccg aagacaaacc 5640 caaacctgtg tttgacgaca aaggcaagca acccacggat acggttcctc ctgttgacaa 5700 tggcaagccc gacataagca aacctggtga gaaacaggga gacatagata ttgctagcaa 5760 gtttaataat atagtcatgg caaaattgaa agctcaatct tcatcagatc cattgacgaa 5820 aaagcaatgt gatcaattga tgttgagtct aatcaaatgg tttgaaaaat ttggaatcac 5880 aaaagacaat gcccgattgc tgatatttca atttggtata tctttttcga cttcaaaaga 5940 aaatcttaac aatatcacta acaatattgt tgtagagaat gacaaaggtg ggtttgtaaa 6000 aattttaaaa atagattact tgaacaaact gtacggttcg attcctgagt cgcatactca 6060 caatttagaa agagttctac taagacatta tgctcaagaa atcttaatat tactaagaag 6120 caaagtgtta gaatggccta ggaaattagc aagaaataag ggcattttcg aacaatatgc 6180 ctacatggcc tgtgactttt tcgacaccgc agaattagaa ttgacggagg ctgagaccac 6240 agctttgacg acggtaaagt cttggactat gaaccattat aagaagaaaa gacagatagt 6300 taatagttca caattagaat gaataatttt cctgaaattt ttgatgatga atccacatgc 6360 gactatgata aagagataga tcaccaagaa ctatcagata ccttttggtg tttgatggat 6420 ttcatctctt ctaaacatgg gaaaagtgtc gctgatataa attcagggat gaatactttg 6480 attaacatta gaaagagcct caatggaagt ggtaaagttg tgtcgataac tgatagttac 6540 aataaaactt atttccacag tcaaagagga ttgaccaatg ttgactcaag gataaacata 6600 gatatattga agatagattt cattagtatt attgacgatc ttcaaataat atttagaggt 6660 ttaatttaca aagataaagg ttttctagat agtgcggact tgttagattt agataagaaa 6720 acaactacta gaaaatttca agaatatttc aatattctaa aaataaaaat catagagaaa 6780 attggaatga caaaaacatt ccatttcaat atagatttta gaaacacgat ctctccttta 6840 gataagcaaa ggaaatgttc aatttcaagt tctcataaga aaaccaacag attgaacgat 6900 ctcaataatt atataacata tctaaatgat aatattgtgt tgacatttag atggaaagga 6960 gtaggattcg gaggactatc attaaatgat ataaaaattt aaaacacaag cgggtaagtt 7020 ggataaggta atatccgcaa ggtcgaatag ggtttgtatt aatcagacta tttgtaaatc 7080 cttaaaagag acatgaacga taattcaatt tgatcagaga gtggtgattg aattattcga 7140 tgataaatgg tttaaaacca tttatcattc tagtgtatct cgtatactag acc 7193 //