ID U15440; SV 1; linear; genomic RNA; STD; VRL; 8118 BP. XX AC U15440; XX DT 17-FEB-1995 (Rel. 42, Created) DT 19-JUN-2004 (Rel. 80, Last updated, Version 4) XX DE Lettuce infectious yellows virus RNA 1 methyltransferase and RNA-dependent DE RNA polymerase genes, complete cds. XX KW . XX OS Lettuce infectious yellows virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-8118 RA Klaassen V.A.; RT ; RL Submitted (03-OCT-1994) to the INSDC. RL Vicki A. Klaassen, Plant Pathology, University of California at Davis, 570 RL Hutchison Hall, Davis, CA 95616, USA XX RN [2] RP 1-8118 RX DOI; 10.1006/viro.1995.1133. RX PUBMED; 11831736. RA Klaassen V.A., Boeshore M.L., Koonin E.V., Tian T., Falk B.W.; RT "Genome structure and phylogenetic analysis of lettuce infectious yellows RT virus, a whitefly-transmitted, bipartite closterovirus"; RL Virology 208(1):99-110(1995). XX DR MD5; a0280c4ea9face9fd8bc39a2715e4f4b. DR EuropePMC; PMC2786829; 19793810. XX FH Key Location/Qualifiers FH FT source 1..8118 FT /organism="Lettuce infectious yellows virus" FT /segment="RNA 1" FT /lab_host="Nicotiana clevelandii" FT /isolate="92" FT /mol_type="genomic RNA" FT /db_xref="taxon:31713" FT CDS 98..5719 FT /codon_start=1 FT /product="methyltransferase" FT /note="helicase" FT /db_xref="GOA:Q83044" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q83044" FT /protein_id="AAA61797.1" FT /translation="MALEVESAFSLSYLLKENKQTSNNLFSLIQVPYTKMTHAKGKKTH FT LLRCILGSPFETLTKSSIRRSLKNLREVCNLPYCNFKKIPKNISYKYQNPFLKLYEINN FT NFINCKVGATGNTNSTYDWRNLSTIGNGWSVTSYHNDSVSRLHVSMVNNIPNSNTKKLS FT WWVTRVRSKNPWKRPYKVIYQRDFRDDGIKPYVSEFILYAPKNRADLEMQSILLSSVEC FT FQDIKYALNYWTNLKFKEICNSALKRFTQTNIIITPVKPRVVSVNKAREVSSSVEVKLQ FT RYEREGEVFVVSKAGKEDTRVLNDDNAIRNLFNATLNGGKYKLHPEAKSATGKRFKYYK FT DGFCWLDVFADANRRIPEWVKPHCLLTGSVLMSCGLWDFAKRKMVSVSHGLLHYDRKLE FT RSSARAGVRDFVGASNEAVQREDFRDLDLRVEEFAERVLETANLRSDNRLIDNILTRAS FT DYINKKSKESKELDINVCLSMDEKKMITNLFPDIQMSFNQKSYSNHGVFNAMRACENFY FT FSRKFKNSDYIDAGGDVVSTLRSKNHNVHICSPRLDLKDAARHIQRATVIDGLKGYGET FT ISFCTNKTEDCAVNRDIIIAVEVYDMTLRDMAKAMLSHGSRKFEFSCIIPPEIFTKECN FT VELYEGRLKVTRIGDNVEYYYGSNGETFSHSCQTLKDILSVQVFQFGGRVFKKTLEHSR FT GQLHFFSICICEKIEPGSVKLKTYYQRSELDKVTLRIPVKDSFGVVTHYIIKEDREFVS FT SMIEYVANTGIKIDDKMVEWTYSQYRAKKTVTIKSGKVTQKETRIRKELIPGFIAIIMS FT EGIRAREKTHYLAKMLYTSHYKPSIVNIIFRLIMHFLGGTKRFIYESLVDCLKFLTNSD FT YIDTIVNTESRIEDLDKWFVFEQNVTITTDAEDQPSILEQSVKTFLSKYSEDVYERGDR FT SEFELEEFSSEQDLVDQLLNSGGGSKEDEWFYSYIFSIVRTKCTLSLAWRWTNRIFNFI FT TSCRAKGKDFVKYIYEIIKIIINKPWEALCHYLVQGYKTVLKIPMTCVDSVNYLKRKSL FT EKILSYFSHERADDEYIFPGYDSDFSEESGDYGDENTELDSRSRCTVIKSKVEMLFRNI FT KGHIEKFLQRCGIIDQYNKIYHWFKSILTDVDCFNSVLNFITHTGCDALLAVLTGHFSI FT ASCALKFMTDVVIEKNLSEKHHTTTKLIAGNLTQCIYKLDFIHPIWIPIRWGVKEISKI FT HIKKKLLNWRSTKEVTNESICKDLVHKSYIKYFDIKKAVWLLWFSLLIIFLHPTLGFFI FT LFSIYPAIEIKRYYNNVVCFNNIKMSYPHVIDRLGGTYNFAKLKKAVREKFSENKSQGV FT KISEIPAEKDEDVMPPLEEVETPKRSVGRPSSKQDDIEDECNIKEDPTESLNFSNIEAT FT SNRYDTLRVGNSKLCKFLRFYPKSKCYANIQTGDLIRDSIEEFYHLERSKLDIEISKMQ FT RVVEIMNDTGRMLDNVRRMIDDRSMYVTLDGVSWYRLGCKDKNPAKEDFKAIFDHNFNI FT MEGNAKVKEFAVSSDEWRGMYSNERCRAIEQLFNDNNEMVRRPDVNGLKFYNKPPGAGK FT TTTIAKLMSKDLKNKVKCLALSYTKVGRLELIDKLKKDGIEKPEKYVKTYDSFLMNNDN FT ILEIVNLYCDEVFMMHAGHFLTLLTKIAYQNGYCYGDVNQIPFINRDPYTPAYLSREFF FT RKQDLNYDTYTYRCPLDTCYLLSNLKDEMGNIIYAGGVKNVNEVYPTIRSLNLFGINVV FT GEVPVEYNAKYLTFTQDEKLNLQRHIDSQGGCRNAVSTVNEAQGCTFSEVNLVRLVQFD FT NPVMSDINQFVVAISRHTTTFKYFTPHSRLNDRVSNAISSLQSVSDFVLKDYHFRQCL" FT CDS 5808..7238 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q83045" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q83045" FT /protein_id="AAA61798.1" FT /translation="MDIISPGVAFYNYLHRTLIFEYSDYYLPPCEDLRITLSKSKPYHP FT GAYVVSKILGKGERNRPNTWKQVIQSLSHRNFNAPIINHKLDVKRSAQILYDSVVKSLR FT QDRLTEWYEPILPDLFKIGKWLDDRDGSKYRMLNRRLDFASLADKFKTLNLMVKGETKP FT KMDLSTYDSYNAPANIVYYQQIVNLYFSPIFLECFARLTYCLSDKIVLYSGMNTDVLAE FT LIESKLPLGLNAYHTLEIDFSKFDKSQGTCFKLYEEMMYKMFGFSPELYDRDFKYTEYF FT CRAKATCGVDLELGTQRRTGSPNTWLSNTLVTLGMMLSSYDIDDIDLLLVSGDDSLIFS FT RKHLPNKTQEINKNFGMEAKYIEKSSPYFCSKFIVELNGKLKVIPDPIRFFEKLSIPIR FT QEDFVNGSVVKERFISFKDLMKEYDNDVAVIRIDEAVCYRYSIPVGCSYAALCYIHCCM FT SNFVSFRRIYDNCEIVWI" FT CDS 7075..7899 FT /codon_start=1 FT /product="unknown" FT /db_xref="GOA:Q83046" FT /db_xref="UniProtKB/Swiss-Prot:Q83046" FT /protein_id="AAA61799.1" FT /translation="MIMMSPLYALTKQCVIDTAYRLAVPTQHCAIYTVACRILFLSVGF FT MTIVKLCGFKMDTSSFIASIEKDNLMDCLISLVEMRDRLRLCNDFPILNYGVNILELLI FT GKRLNKINNLKNCYVIRELITINISKEWVGKQALKVGLHCFLNLSQAESRHVKYLLSDK FT ESLNKMNFSRYYVPKVVTDLYLDLIGVLYVNTGYNIDLVEKFIFDKLEFLVYDGEEGFK FT SPQVEYNDICTVYNLKPIIKYNRWHTDGSIVIECGDVIGKGINKTKKKICNK" XX SQ Sequence 8118 BP; 2807 A; 1296 C; 1677 G; 2338 T; 0 other; ggtaaagtta tacatttacc gttggacaag gtaagattac cgacatccta atagaattgt 60 ataacttttg ctctttcaat cttcttggag aatttcgatg gcactcgaag ttgaaagcgc 120 tttttcttta tcttatttgc taaaagaaaa caaacaaacc tcaaataatc tcttttcgct 180 gatacaagta ccctacacga aaatgaccca tgcgaaagga aagaagacac atcttcttag 240 atgtatttta ggatctccgt ttgagacttt aaccaagtct agcatccgta ggtccctgaa 300 aaacctaaga gaagtctgta atttacctta ttgcaatttt aagaaaatac caaaaaatat 360 aagttataag tatcaaaacc ctttccttaa attatatgaa ataaacaata attttattaa 420 ttgtaaagtg ggcgccactg gtaacacgaa ttcaacgtac gattggcgta atttgtccac 480 tattggtaat ggttggagtg tgacgtcata tcataatgat tctgtcagta ggttacatgt 540 aagtatggta aataacattc ctaattccaa cacgaagaag ctcagttggt gggttactcg 600 agttaggagt aaaaatcctt ggaaacgtcc ctacaaggtt atttaccaaa gggattttcg 660 agatgacggg attaaaccct atgtcagtga atttatttta tatgccccta aaaatagagc 720 tgacttggaa atgcaatcca tactactgtc ttcagtagaa tgtttccagg acattaagta 780 tgccctcaat tactggacca atttaaaatt taaagagatc tgcaatagtg cgcttaaaag 840 gttcactcaa accaatatca ttatcacccc tgtaaaaccc agggttgtga gtgtaaacaa 900 agcgcgagag gtttcgagta gtgtagaagt gaagttgcag agatatgagc gagagggtga 960 agtattcgtt gtgtccaagg caggtaaaga agatacgcga gtcttgaatg acgacaacgc 1020 cattaggaat ctgttcaacg ccactctcaa tggtggtaaa tacaagcttc atccagaagc 1080 aaaatctgca actggaaaaa gattcaagta ttataaagac ggattttgtt ggctcgacgt 1140 ctttgctgat gccaacagaa gaataccaga gtgggtaaaa ccacattgtc ttctcacggg 1200 atcagttttg atgtcgtgtg gcttgtggga ttttgcaaaa agaaagatgg ttagtgtgtc 1260 gcacggattg cttcattatg ataggaagtt agaaagatct tcagctagag cgggggtgag 1320 ggactttgtt ggtgcctcaa atgaagccgt gcagagggaa gacttcagag atttagatct 1380 acgggttgaa gagttcgccg agagagtgct agagacggcc aatttgagat ctgataacag 1440 attgatagac aatatattga ccagggcatc agattacatt aataaaaaga gtaaagagtc 1500 taaggagtta gatattaacg tttgtctgtc catggatgag aagaagatga tcaccaattt 1560 atttccggac attcaaatga gttttaacca aaaatcttac tcaaaccatg gtgtcttcaa 1620 tgcaatgagg gcttgcgaaa atttttactt ctcaaggaag tttaaaaatt cagactatat 1680 agacgcaggt ggtgatgtgg tatccacttt acgttctaaa aaccacaatg tccacatctg 1740 ttcgcccagg ttagatttga aagatgctgc tagacacatc caaagggcca cagttattga 1800 cgggctgaaa ggatatggtg aaaccatatc attctgcacc aacaaaacgg aagactgcgc 1860 ggtgaacaga gatataatca ttgcagttga ggtttatgac atgactttaa gggacatggc 1920 aaaagctatg ttgtctcatg gaagtaggaa atttgagttt agttgtatca taccacctga 1980 gatattcact aaggagtgta atgtcgaatt gtatgaaggc agactcaaag tgacgaggat 2040 tggagataat gtagaatatt attacgggag caacggagag acgttcagtc atagttgtca 2100 gactctaaaa gacattctat cagttcaagt cttccaattc ggcggccgtg tgtttaagaa 2160 aaccttggag cactctagag gacaattaca cttcttctcc atatgcattt gcgaaaaaat 2220 tgaacctggg agtgtaaaat tgaaaacgta ttaccagaga agtgaattag ataaagtcac 2280 cctgagaata ccagttaaag acagctttgg ggtggtaaca cattatatca taaaagaaga 2340 tagagaattt gtcagttcta tgatagagta tgttgcgaat acaggcataa aaatagatga 2400 taaaatggtg gaatggacct attctcagta tagggctaag aaaactgtga ctataaaatc 2460 cggaaaggta actcaaaaag agaccaggat tagaaaagaa ctaattccag ggtttatagc 2520 cataatcatg tcagagggga tcagggcaag agaaaagact cattatcttg ctaaaatgtt 2580 gtacaccagt cattataaac cttcgatagt taatatcatc tttaggttga taatgcattt 2640 tttaggtggc actaaacgat ttatatacga gtcgttggta gactgtttaa aatttttgac 2700 aaacagtgac tacatcgata caatagtcaa caccgagagt cgtatagaag acttagataa 2760 gtggtttgta tttgaacaaa acgtcacgat aaccacggac gcagaagatc aaccttctat 2820 attagaacaa agtgtgaaaa cattcttgag caagtatagt gaagatgtat atgaaagggg 2880 tgatcgtagt gagttcgaat tagaagaatt ttcaagcgaa caagatctgg ttgatcagtt 2940 gttgaactct ggaggtgggt ctaaggaaga cgaatggttc tattcatata ttttttcaat 3000 agtcagaacc aagtgcactc tgagtttagc ctggagatgg acaaatagaa tattcaattt 3060 cataacatct tgtagagcta aggggaaaga ttttgtaaaa tatatttatg agatcataaa 3120 aattataatc aacaaaccct gggaagcgtt atgtcactat ttagtccagg gatataaaac 3180 tgtattaaaa atacccatga cttgtgtcga tagtgtaaat tatttgaaga ggaagagtct 3240 agagaaaata ctgtcgtatt tttctcatga gagagctgat gatgagtaca ttttccccgg 3300 atatgatagt gattttagtg aagagtccgg tgattatgga gatgaaaata ctgaattaga 3360 cagtcgcagt cgttgtacag tcattaaatc aaaagtagaa atgttgttta gaaatatcaa 3420 aggtcacatc gaaaaattcc ttcaaagatg tgggataata gatcaataca ataagatcta 3480 tcattggttc aaatctattt taacagacgt agattgtttt aattcagtat taaattttat 3540 aacacacact ggctgtgatg cattattagc agtcctcaca ggtcatttct caatagctag 3600 ttgtgcgtta aaatttatga ccgatgtggt gattgaaaag aatctcagtg aaaaacacca 3660 caccacaact aaattaatag caggcaattt gacgcaatgc atatacaaat tggatttcat 3720 tcatccaatt tggatcccta ttagatgggg cgtcaaagaa atatcaaaaa ttcacatcaa 3780 aaagaaactt ctaaattggc gatcaaccaa agaagtcacc aacgagagta tttgtaaaga 3840 tttagtgcat aagtcttaca tcaaatactt tgatataaag aaagcagttt ggttgttatg 3900 gtttagtctt ctaatcatat ttttgcatcc aacgttgggt ttctttatat tgtttagcat 3960 ttatcctgcg attgagataa agaggtacta caacaacgta gtctgcttta acaacattaa 4020 aatgagttat ccacatgtta ttgacagatt aggaggtacc tacaatttcg ccaaattaaa 4080 gaaagccgtt agggagaaat tttctgagaa caagtctcaa ggggtaaaaa tttcagaaat 4140 accagcagag aaggatgaag atgtcatgcc accactagaa gaagtagaaa cacctaagag 4200 atcagtagga agaccttctt cgaagcaaga tgatattgaa gatgaatgta atattaaaga 4260 agaccctact gagagtttaa atttttcaaa cattgaagcc acatcaaaca ggtatgacac 4320 tcttcgtgta gggaacagca aattgtgcaa attcctaaga ttttacccca agtctaaatg 4380 ttatgctaac atacagactg gagatttgat tagggatagc atagaggaat tttaccattt 4440 agaaagaagt aaactggata ttgagatcag taaaatgcaa agggtagtag agatcatgaa 4500 tgatactggt cgtatgttgg ataatgtcag acgtatgatc gacgacagat ccatgtacgt 4560 taccttagat ggagtaagct ggtataggtt aggatgtaaa gataagaatc ccgccaaaga 4620 ggactttaaa gccattttcg accacaattt caacatcatg gaagggaatg cgaaggttaa 4680 agaatttgct gtatcatctg atgaatggag gggtatgtac agcaatgaaa gatgtagagc 4740 tatagaacaa ctcttcaatg ataataatga aatggtaaga agacccgatg tgaatggtct 4800 aaaattttat aataaaccac caggggcagg gaagacgact acaatagcca aattaatgag 4860 caaagattta aaaaataagg tcaaatgtct ggctctatcc tacaccaaag ttgggcgttt 4920 agagttgata gataaattga agaaagatgg aatcgaaaag cctgagaagt acgttaagac 4980 atacgacagt ttcttgatga acaacgacaa tatcttagaa attgtcaatt tatactgcga 5040 tgaggtcttc atgatgcatg cgggtcactt cttaactcta ttaaccaaga tagcatacca 5100 aaatgggtat tgttatggag atgtcaatca aattcccttc attaataggg acccatacac 5160 acctgcttac ttatcaagag aattctttag gaaacaagat ctaaactatg acacttatac 5220 gtacaggtgc ccattagata cctgttactt gttgtcgaat ttaaaagatg agatgggtaa 5280 catcatttac gctggtggag tcaaaaatgt gaatgaggtt tatccaacca tcaggtcact 5340 aaatttgttc ggtatcaatg ttgtgggtga agtcccagtc gaatataatg ccaaatattt 5400 aacttttaca caagatgaga agttgaacct acagaggcat atagattcgc aaggaggttg 5460 cagaaacgcg gtcagcactg taaatgaagc gcagggatgc actttcagtg aagtaaacct 5520 ggtcaggttg gttcaatttg ataaccctgt tatgagcgac ataaatcaat ttgtcgtagc 5580 aatttccagg catacaacaa cattcaaata cttcacacct cactctcgat taaatgatag 5640 agtgtccaac gccatatcat cactacaatc tgttagtgat tttgttttga aagactatca 5700 ttttagacag tgcctttgac gtgtatacgc tgaacttaac gcacagggac tttaagttac 5760 cactgtgtcg accaccagct gcgagatatg agagcataat agacctgatg gacataatat 5820 caccaggggt ggccttttac aattatttac acaggacgtt gatttttgaa tactcagatt 5880 actacttacc tccatgtgaa gatttgagaa taactttgag caagtccaaa ccataccacc 5940 ctggagctta tgttgtctcg aaaattctcg ggaagggaga aagaaacaga ccgaacactt 6000 ggaaacaagt tattcagtca ctatctcaca ggaattttaa tgcgccaatt atcaatcaca 6060 agttagatgt taaaagaagc gcacaaatac tatatgactc ggtggtgaaa tcgttaagac 6120 aagacaggtt gactgagtgg tatgaaccta ttttacctga ccttttcaaa atcggtaagt 6180 ggttggatga tagagatggt agcaaatatc gtatgttgaa ccgtagacta gactttgcca 6240 gtttagcaga caagttcaaa actctcaacc tcatggttaa gggtgagacc aagcccaaga 6300 tggatcttag cacatacgac agttacaatg ctccagctaa tatagtctat taccagcaga 6360 tagtcaattt gtatttttca cccatctttt tagagtgttt cgcaaggttg acttactgtt 6420 taagtgataa aatcgttcta tacagcggca tgaacacaga cgttctagct gagttaattg 6480 aaagcaaact accattaggt cttaacgcat atcacacgct tgagatagat ttcagcaaat 6540 ttgataagtc tcaaggcaca tgcttcaaat tatatgaaga aatgatgtat aagatgtttg 6600 gattttctcc tgagttgtac gatcgagact tcaaatacac ggagtacttc tgtagagcga 6660 aagcaacttg tggagtggat ctcgagttag gaacacagcg cagaactgga tctccaaaca 6720 cttggttgtc taacactcta gttactttag gtatgatgtt atcatcttac gacattgatg 6780 atatagacct actccttgtt agcggggatg acagtttaat tttttccagg aaacatctac 6840 cgaataaaac ccaagagata aacaaaaact ttgggatgga ggccaagtat atagagaaat 6900 catctccata cttctgctcc aaattcatag ttgagttaaa tggtaagttg aaagtcatac 6960 ctgatccaat acgattcttt gaaaaattgt caattccaat tagacaagaa gatttcgtaa 7020 acggaagcgt agtcaaagaa cggttcatat cattcaaaga tttgatgaaa gaatatgata 7080 atgatgtcgc cgttatacgc attgacgaag cagtgtgtta tagatacagc ataccggttg 7140 gctgttccta cgcagcattg tgctatatac actgttgcat gtcgaatttt gtttctttcc 7200 gtaggattta tgacaattgt gaaattgtgt ggatttaaga tggacacttc aagttttatc 7260 gcctcgattg aaaaagacaa tttgatggat tgcttgatca gtttagttga gatgagagat 7320 cgtcttaggt tgtgcaacga tttcccaata ttgaattatg gagttaacat tttagaatta 7380 ctaataggca aaaggttgaa taaaattaat aatttaaaga attgttatgt aattagagaa 7440 ctaataacaa taaatataag taaggagtgg gttggaaagc aagctctaaa agttggctta 7500 cattgcttct taaatctatc tcaagccgaa agcagacatg tcaagtatct tttgagcgac 7560 aaagagtcct taaataagat gaacttctct agatactatg tccccaaagt ggtaacagat 7620 ttgtatttag atttgattgg ggtgttatac gtgaatacag gatacaacat agatttagta 7680 gaaaaattta ttttcgataa attagaattt ctagtttatg atggagagga gggtttcaaa 7740 agtccacagg ttgaatacaa tgacatatgt acggtctaca atttgaaacc aataataaaa 7800 tacaatcgtt ggcacacaga tggttctata gttatagagt gtggtgacgt aataggaaaa 7860 ggtattaata aaacaaagaa aaaaatttgc aataaatgat gccaaagcgg agttcgtaaa 7920 gaacttcaaa gcaaaaaata aaaataacga atagggtgtt ttgatagtag ttccccccta 7980 tggtctataa gtgttagtat taataagtct tataataaaa ccaaaaatat attaatatta 8040 tatctatgtc atgtagttaa cataaatata atgtcttcct aaaatccttg gaagactgta 8100 tatatagaat aaaggtcg 8118 //