ID U15016; SV 1; linear; genomic DNA; STD; VRL; 2739 BP. XX AC U15016; XX DT 01-OCT-1994 (Rel. 41, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 8) XX DE Tomato leaf curl New Delhi virus-Mild coat protein AV1, AV2, AV3, DE replication-associated protein AC1, AC2, AC3, AC4 and AC5 genes, complete DE cds. XX KW . XX OS Tomato leaf curl New Delhi virus - Mild OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RX PUBMED; 7844539. RA Padidam M., Beachy R.N., Fauquet C.M.; RT "Tomato leaf curl geminivirus from India has a bipartite genome and coat RT protein is not essential for infectivity"; RL J. Gen. Virol. 76(Pt 1):25-35(1995). XX RN [2] RP 1-2739 RA Padidam M.; RT ; RL Submitted (21-SEP-1994) to the INSDC. RL Malla Padidam, Division of Plant Biology, The Scripps Research Institute, RL 10666 North Torrey Pines Road, La Jolla, CA 93027, USA XX DR MD5; 30f866567d51a5d4c96bf7e696dacc1f. DR EuropePMC; PMC110531; 9811744. DR EuropePMC; PMC112605; 10364296. DR EuropePMC; PMC2170441; 17963488. DR EuropePMC; PMC3125359; 21676270. DR EuropePMC; PMC3550763; 23637479. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus - Mild" FT /host="Lycopersicon esculentum" FT /isolate="New Delhi" FT /mol_type="genomic DNA" FT /clone="pMPA2" FT /note="DNA component that causes mild symptoms" FT /db_xref="taxon:223350" FT CDS 48..434 FT /codon_start=1 FT /product="AV3" FT /db_xref="UniProtKB/TrEMBL:Q88543" FT /protein_id="AAA92815.1" FT /translation="MKFTLHGLFSAWGPINRLAHQVWIHKHVGSIVGRISRKRSWSKVH FT ASCKISPRDRKELFPRHSRVRSCPRSHSCSPSKELWRSDQQISSFQRPHRRYADVSTST FT APMELVQLSPLPASQKQRPGPTGR" FT CDS 127..465 FT /codon_start=1 FT /product="AV2" FT /db_xref="GOA:Q88544" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q88544" FT /protein_id="AAA92816.1" FT /translation="MWDPLLDEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT CDS 287..1057 FT /codon_start=1 FT /product="AV1" FT /function="coat protein" FT /db_xref="GOA:Q88545" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q88545" FT /protein_id="AAA92817.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(317..802) FT /codon_start=1 FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:Q88546" FT /protein_id="AAA92818.1" FT /translation="MHVLHRCCARFIVKHVKNFPKILWGSCRTTVTDQKKHDTVSMVFC FT LDVFIHPYLSQHIDRFHTKSLPYAMCESSSTGNITNAHDFTNMRDIVPGFKGLHLARAF FT TAPWHVRTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSIGAVEVETSAYLRCGR" FT CDS complement(1054..1464) FT /codon_start=1 FT /product="AC3" FT /db_xref="GOA:Q88547" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q88547" FT /protein_id="AAA92819.1" FT /translation="MITDSLTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLRYLDMLGVIGI FT YNVIRAVYHVLDNVMEQTIDVQTSYDIKLDIY" FT CDS complement(1184..1603) FT /codon_start=1 FT /product="AC2" FT /db_xref="GOA:Q88548" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q88548" FT /protein_id="AAA92820.1" FT /translation="MQSSSHSRSHSIPVAKTSLPQKKKKSILRRRVDLPCGCTYYISIN FT CHDYGFTHRGVHHCGSSREWRIYLGNSKSPVFQNFEARQQALPNTARHHQDSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT CDS complement(1506..2591) FT /codon_start=1 FT /product="AC1" FT /function="replication-associated protein" FT /db_xref="GOA:Q88549" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q88549" FT /protein_id="AAA92821.1" FT /translation="MAPPRRFRIDAKNYFLTYPKCSLTKEEALSQLQTLETPTAKKFIK FT ICRELHDDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGVFQIDGRSARGGQQTATDAYAKAINTGNKEDALKVLKELAPKDYVLQFH FT NLISNLDRIFQPRSEVYVSPFSISSFDRVPPELVDWASVNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPPSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPTEEEEEHSQEAS" FT CDS complement(2258..2434) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q88550" FT /protein_id="AAA92822.1" FT /translation="MGLRISMFSSNSKGNSSAKITDSSTWFPQVGQHISIRTFRELNQR FT QMSKHTSTKTETF" XX SQ Sequence 2739 BP; 746 A; 592 C; 622 G; 779 T; 0 other; taatattacc gaatggccgc gcaaattttt aggtgggccc tcaaccaatg aaattcacgc 60 tacatggcct atttagtgcg tggggaccaa taaatagact tgctcaccaa gtttggatcc 120 acaaacatgt gggatccatt gttggacgaa tttccagaaa gcgttcatgg tctaaggtgc 180 atgctagctg taaaatatct ccaagagata gaaaagaact attccccaga cacagtcggg 240 tacgatcttg tccgagatct cattcttgtt ctccgagcaa agaactatgg cgaagcgacc 300 agcagatatc atcatttcaa cgcccgcatc gaaggtacgc cgacgtctca acttcgacag 360 cccctatgga gctcgtgcag ttgtccccat tgcccgcgtc acaaaagcaa aggcctggac 420 caacaggccg atgaacagaa aacccagaat gtacagaatg tatagaagtc ctgacgtgcc 480 aaggggctgt gaaggccctt gcaaggtgca gtcctttgaa tccaggcacg atgtctctca 540 tattggtaaa gtcatgtgcg ttagtgatgt tacccgtgga actggactca cacatcgcgt 600 agggaagcga ttttgtgtga aatctgtcta tgtgctggga aagatatgga tggatgaaaa 660 catcaagaca aaaaaccata ctaacagtgt catgtttttt ttggtccgtg accgtcgtcc 720 tacaggatcc ccacaggatt ttggggaagt ttttaacatg tttgacaatg aaccgagcac 780 agcaacggtg aagaacatgc atcgtgatcg ttatcaagtc ttacggaagt ggcatgcgac 840 tgtgacggga ggaacatatg catctaggga gcaagcatta gttaggaagt ttgttagggt 900 taataattat gtagtttata atcaacaaga ggccggcaag tatgagaatc atactgaaaa 960 tgccttaatg ttgtatatgg cctgtactca cgcatcaaat cctgtatatg ctactttgaa 1020 aatccggatc tatttctatg attcggtaac aaattaataa atatcaagct ttatatcata 1080 tgaagtctgt acatcaatag tttgttccat tacattatcc aaaacatgat aaactgctct 1140 tattacatta taaattccta ttacaccaag catatccagg tacctaagga cctgggtttt 1200 gaagactctc aagaaaatcc caatctgagg gcgtaagccc gtccagattt tgaaagttag 1260 aaaacacttg tgaagtccca gggctttccg caggttgtgg ttgaattgta tttgaatctt 1320 gatgatgtcg tgctgtgtta ggaagggcct gctgtcgtgc ttcaaaattt tgaaatacag 1380 gggatttcga atttcccagg tatatacgcc actctctgct cgatccgcag tgatgtactc 1440 ccctgtgagt gaatccgtaa tcatggcagt tgatcgatat ataatatgta cacccacacg 1500 ggagatcaac tcgcctcctg agaatgctct tcttcttctt ctgtgggagc gatgttttcg 1560 cgaccggaat agagtggctc ctcgagtgtg atgaagactg cattcttgat tgcccactgt 1620 ttcagtgctg catttttctc ttcgtccaga tattccttat agctgctggg tggaccttta 1680 ttgcacagga agatagtggg aattccacct ttaatcatga ctggctttcc gtacttggtg 1740 ttgctttgcc agtcacgctg ggcccccatg aattctttaa agtgctttag atagtgggga 1800 tcaacgtcat caatgacgtt gtaccaggca tcattgctat acacctttgg gctcagatca 1860 agatgtccac acaagtaatt gtggggtcct aagcatcgag cccacattgt tttgcccgtt 1920 ctactatccc cctcaatgac tatgcttatg ggcctaaaag gccgcgcagc ggcacacaca 1980 acattgacac tggcccaatc gacaagttct ggaggaactc ggtcgaagga tgaaattgaa 2040 aatggagaaa cgtaaacctc agaacgaggt tggaaaatgc gatccaaatt gctaattaga 2100 ttatgaaact gcagaacata atcctttggg gctaattcct ttaatacttt caatgcatct 2160 tccttattcc ccgtgttaat cgccttagca tatgcatcgg tggctgtctg ctgaccacca 2220 cgagcagatc gtccatcgat ctggaaaaca ccccattcta gaacgtctcc gtctttgtcg 2280 atgtatgctt tgacatctga cgctgattta gctccctgaa tgttcggatg gaaatgtgct 2340 gaccgacttg gggaaaccaa gtcgaagaat ctgttatttt tgcactggaa tttcccttcg 2400 aattggatga gaacatggat atgcggagac ccatcatcgt gcagctctct acagatcttg 2460 atgaatttct tcgcagttgg ggtttctagg gtttgcaatt gggaaagtgc ctcttcttta 2520 gttagagagc actttgggta tgtgaggaaa tagtttttgg catctattct gaaacgacgt 2580 ggcggagcca taaaacttgt cgttttgatt cggcgtccct caacttcctc tatgtaattg 2640 gcgtctggcg tcccatatat aggtaggacg ctaaatggca aaattgtaat ttggaaaaga 2700 aaattacttt aattcaaaat cctcatagcg gccattcgt 2739 //