ID U13918; SV 1; linear; mRNA; STD; VRL; 3168 BP. XX AC U13918; XX DT 21-SEP-1994 (Rel. 41, Created) DT 13-FEB-2008 (Rel. 94, Last updated, Version 10) XX DE Barley stripe mosaic virus Type RNA gamma segment, complete sequence. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RP 1-2790 RX DOI; 10.1016/0042-6822(87)90211-X. RX PUBMED; 3590624. RA Gustafson G., Hunter B., Hanau R., Armour S.L., Jackson A.O.; RT "Nucleotide sequence and genetic organization of barley stripe mosaic virus RT RNA gamma"; RL Virology 158(2):394-406(1987). XX RN [2] RX DOI; 10.1016/0378-1119(88)90175-8. RX PUBMED; 3246352. RA Petty I.T., Hunter B.G., Jackson A.O.; RT "A novel strategy for one-step cloning of full-length cDNA and its RT application to the genome of barley stripe mosaic virus"; RL Gene 74(2):423-432(1988). XX RN [3] RX DOI; 10.1016/0042-6822(89)90601-6. RX PUBMED; 2763456. RA Petty I.T., Hunter B.G., Wei N., Jackson A.O.; RT "Infectious barley stripe mosaic virus RNA transcribed in vitro from RT full-length genomic cDNA clones"; RL Virology 171(2):342-349(1989). XX RN [4] RP 1-3168 RX PUBMED; 8664501. RA Edwards M.C.; RT "Mapping of the seed transmission determinants of barley stripe mosaic RT virus"; RL Mol. Plant Microbe Interact. 8(6):906-915(1995). XX RN [5] RP 1-3168 RA Edwards M.C.; RT ; RL Submitted (22-AUG-1994) to the INSDC. RL Edwards M.C., U.S. Dept. of Agriculture, Agricultural Research Service, RL Northern Crop Science Laboratory, 1307 18th Street North, Fargo, ND RL 58105-5677, USA XX DR MD5; 928d819d68a054af58b251498ee0ada7. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX FH Key Location/Qualifiers FH FT source 1..3168 FT /organism="Barley stripe mosaic virus" FT /chromosome="RNA gamma" FT /host="Hordeum vulgare" FT /lab_host="Hordeum vulgare" FT /strain="Type" FT /mol_type="mRNA" FT /clone="pTypegamma16" FT /note="this sequence is derived from a single, full-length FT cDNA clone from which infectious transcripts can be made" FT /db_xref="taxon:12327" FT misc_difference 52 FT /replace="a" FT /note="conflict" FT /citation=[1] FT misc_difference 67 FT /replace="a" FT /note="conflict" FT /citation=[1] FT misc_difference 68 FT /replace="c" FT /note="conflict" FT /citation=[1] FT repeat_region 72..443 FT /rpt_type=TANDEM FT /note="A similar tandem repeat is known to occur in RNA FT gamma of some other BSMV strains." FT /citation=[4] FT /experiment="experimental evidence, no additional details FT recorded" FT misc_difference 185 FT /replace="a" FT /note="conflict" FT /citation=[1] FT misc_difference 198 FT /replace="t" FT /note="conflict" FT /citation=[1] FT misc_difference 441..446 FT /replace="" FT /note="conflict" FT /citation=[1] FT misc_difference 557 FT /replace="a" FT /note="conflict" FT /citation=[1] FT misc_difference 570 FT /replace="t" FT /note="conflict" FT /citation=[1] FT misc_difference 1015 FT /replace="t" FT /note="conflict" FT /citation=[1] FT misc_difference 1158 FT /replace="a" FT /note="conflict" FT /citation=[1] FT misc_difference 1231 FT /replace="g" FT /note="conflict" FT /citation=[1] FT misc_difference 1369 FT /replace="g" FT /note="conflict" FT /citation=[1] FT misc_difference 1393 FT /replace="c" FT /note="conflict" FT /citation=[1] FT misc_difference 1396 FT /replace="a" FT /note="conflict" FT /citation=[1] FT misc_difference 1456 FT /replace="a" FT /note="conflict" FT /citation=[1] FT misc_difference 1465 FT /replace="a" FT /note="conflict" FT /citation=[1] FT misc_difference 1684 FT /replace="c" FT /note="conflict" FT /citation=[1] FT misc_difference 2077 FT /replace="t" FT /note="conflict" FT /citation=[1] FT misc_difference 2173 FT /replace="a" FT /note="conflict" FT /citation=[1] FT misc_difference 2416 FT /replace="g" FT /note="conflict" FT /citation=[1] FT misc_difference 2490 FT /replace="c" FT /note="conflict" FT /citation=[1] FT misc_difference 2613 FT /replace="g" FT /note="conflict" FT /citation=[1] FT misc_difference 2640 FT /replace="c" FT /note="conflict" FT /citation=[1] FT misc_difference 2716 FT /replace="g" FT /note="conflict" FT /citation=[1] FT misc_difference 2717 FT /replace="t" FT /note="conflict" FT /citation=[1] FT misc_difference 2839 FT /replace="a" FT /note="conflict" FT /citation=[1] FT misc_difference 2930^2931 FT /replace="aa" FT /note="conflict" FT /citation=[1] XX SQ Sequence 3168 BP; 890 A; 589 C; 748 G; 941 T; 0 other; gtatagcttg agcattaccg tcgtgtaatt gcaacacttg gcttgccaaa tgacgctaaa 60 gcgttcttga aacaaacaac aattcggcat ggatgttgtg aagaaattcg ccgtcatgtc 120 agtgactgta gtagcaggtc ccgtccttac gctttcatca cctgtggtgg tgacgtttgg 180 aacaggctta attgccgcat ctttggtgaa acggttgcta caggaacaac cccgtgtaat 240 tgctcacgat cacgaacatt acccaggtgg ttctgagagc agttctagct cttgtgctac 300 cgcgcctatt ttacgtaatc tttcgcgaga tcagtgcgat tcagagaata ttggatgcag 360 ttctagcgcc tgttctccgt ctgaaattgt gaaagttaca aggcaggtag tggaagttga 420 acgtggtctt taccgggaca tttacaaaca acaattcggc atggatgttg tgaagaaatt 480 cgccgtcatg tcagtgactg tagtagcagg tcccgtcctt acgctttcat cacctgtggt 540 ggtgacgttt ggaacaggct taattgccgc atctttggtg aaacggttgc tacaggaaca 600 accccgtgta attgctcacg atcacgaaca ttacccaggt ggttctgaga gcagttctag 660 ctcttgtgct accgcgccta ttttacgtaa tctttcgcga gatcagtgcg attcagagaa 720 tattggatgc agttctagcg cctgttctcc gtctgaaatt gtgaaagtta caaggcaggt 780 agtggaagtt gaacgtggtc tttaccggga catttttcag gacaacgaaa tcccatcagt 840 catggaagag aaactgcaga aactccttta ctctgagggt gagaagattc gaagacgttg 900 ccaatttgaa gcatcaacga tgcactcacg caaagtaaag gttccggagg taggtactat 960 cccagatatc caaacttggt tcgatgctac gtttcctggt aactccgtta ggttctctga 1020 tttcgacggt tatactgttg ctacggagga cattaacatg gatgttcagg attgtagact 1080 taagttcggg aagacttttc gaccttatga atttaaggaa tcactgaaac cagtactgag 1140 gacagcaatg ccagaaaggc gacagggtag tttgattgaa agtgtgctgg cctttcgtaa 1200 aagaaatttg gctgcgccca gattacaagg agctttgaat gaatggcaca caattgagaa 1260 tgtgctgaag aaggcgttaa aggtattctt ctttgaagat ttaattgatc gaacggatca 1320 ttgcacttac gagtcagcgc tcagatggtg ggataaacaa tcagtgacag ctcgagcgca 1380 gctcgtggcg gatcagcgga ggttatgtga tgttgacttc acgacttata acttcatgat 1440 aaaaaatgat gtaaagccga agttggatct aacacctcaa gttgaatatg cagctttgca 1500 gactgttgtg tatcctgata agatagtcaa tgctttcttt ggtccgatca taaaggagat 1560 taatgaacgg atcatcagag cgcttagacc tcatgtggtc tttaattctc gtatgactgc 1620 tgatgaactg aatgaaacag ttgccttttt gacacctcac aagtacagag ccttagagat 1680 tgatttttca aaatttgata aatcaaagac tgggcttcat atcaaagctg tcattggact 1740 ctataagctc tttggtctag atggcctgtt aaaagtactc tgggaaaaat cgcaatatca 1800 gacttacgtg aaagatagaa acttcggtct cgaggcatat ctattatatc agcaaaagtc 1860 aggaaattgt gacacttacg gttcgaacac ctggtctgcc gccttggcgt tgttagattg 1920 tcttcctttg gaagatgcac atttctgtgt atttggtggt gatgattcat tgatattgtt 1980 tgatcaggga tacataattt ccgacccatg ccggcaactt gccggtactt ggaatcttga 2040 atgtaaagtg ttcgacttca agtaccccgc attttgcggt aaatttctgc tgtgcataga 2100 tggaaaatat cagtttgttc cagatgcggc aaaatttatc acaaaattag gtagaactga 2160 tgtgagagat gtggaagttt tgagtgagat ttatatctct atcaatgaca attacaaatc 2220 ttacaaagac tttaaggtgc ttgatgcttt ggataaggct ttagtggaca gatatcgatc 2280 cccttatagt gctatttctg ctttggtttc tttatgttat catatctttg actttaataa 2340 gtttaagttg ctgtttaatt gtgaagggaa atttgtggat aagaagctga gaaaggactt 2400 cgagtggtga actctaggtc ctgatgttta aatctactgt atttaccttc gcatgatggc 2460 tactttctct tgtgtgtgtt gtggtacctt aactacaagt acttactgtg gtaagagatg 2520 tgagcgaaag catgtatatt ctgaaacaag aaataagaga ttggaacttt acaagaagta 2580 tctattggaa ccgcaaaaat gcgccctgaa tgaaatcgtt ggacacagtt gtggaatgct 2640 atgctccatt gcggaagagg cttgtgatca actgccaatc gtgagtaggt tctgtggcca 2700 aaagcatgcg gatctacatg attcacttct gaaacgttct gaacaggagt tacttcttga 2760 atttctccag aagaagatgc aggagctgaa actttctcat atcgtaaaaa tggctaagct 2820 tgaaagtgag gttaacgcga tacgtaagtc cgtagcttct tcttttgaag attctgttgg 2880 atgtgatgat tcttcttccg tttctaagtt gtaaaaaaaa aaaaaaaaaa tgtttgatca 2940 gatcattcaa atctgatggt gcccatcaac catatgatgg gagtgtttgc aagtccacta 3000 taatcgaact tgaaaacgat gcctgaattg gaaaccatga atcttaacgg attctggaga 3060 gaaaatttag gaattggtat gtaagctaca acttccggta gctgcgtcac actttaagag 3120 tgtgcatact gagccgaagc tcagcttcgg tcccccaagg gaagacca 3168 //