ID U13916; SV 1; linear; mRNA; STD; VRL; 3164 BP. XX AC U13916; XX DT 21-SEP-1994 (Rel. 41, Created) DT 13-FEB-2008 (Rel. 94, Last updated, Version 10) XX DE Barley stripe mosaic virus CV17 RNA gamma segment, complete sequence. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RP 1-137 RX DOI; 10.1016/0042-6822(92)90722-2. RX PUBMED; 1604824. RA Edwards M.C., Petty I.T., Jackson A.O.; RT "RNA recombination in the genome of barley stripe mosaic virus"; RL Virology 189(1):389-392(1992). XX RN [2] RP 1-3164 RX PUBMED; 8664501. RA Edwards M.C.; RT "Mapping of the seed transmission determinants of barley stripe mosaic RT virus"; RL Mol. Plant Microbe Interact. 8(6):906-915(1995). XX RN [3] RP 1-3164 RA Edwards M.C.; RT ; RL Submitted (22-AUG-1994) to the INSDC. RL Edwards M.C., U.S. Dept. of Agriculture, Agricultural Research Service, RL Northern Crop Science Laboratory, 1307 18th Street North, Fargo, ND RL 58105-5677, USA XX DR MD5; e6adaafa8a5d9f1326e3b09955628593. DR EuropePMC; PMC3915304; 24499968. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX FH Key Location/Qualifiers FH FT source 1..3164 FT /organism="Barley stripe mosaic virus" FT /chromosome="RNA gamma" FT /host="Hordeum vulgare" FT /lab_host="Hordeum vulgare" FT /strain="CV17" FT /mol_type="mRNA" FT /clone="pCV17gamma2" FT /note="this sequence is derived from a single, full-length FT cDNA clone from which infectious transcripts can be made" FT /db_xref="taxon:12327" FT misc_recomb 1..70 FT /note="may be derived from RNA alpha of BSMV strain CV17 FT via a past recombination event." FT /citation=[2] FT /citation=[1] FT /experiment="experimental evidence, no additional details FT recorded" FT repeat_region 73..441 FT /rpt_type=TANDEM FT /note="A similar tandem repeat is known to occur in RNA FT gamma of some other BSMV strains (eg. Type strain)." FT /citation=[2] FT /experiment="experimental evidence, no additional details FT recorded" XX SQ Sequence 3164 BP; 885 A; 579 C; 740 G; 960 T; 0 other; gtatgtaagt tgcctttgag cgtaaaatgt cttatatgcc cataatcgta atcgattctt 60 tttgatcttt aaacaacaat tcggcatgga tgttgtgaag aaattcgccg tcatgtcagt 120 gactgtagta gcaggtcccg tccttacgct ttcatcacct gtggtggtga cgtttggaac 180 aggcttaatt gccgtatctt tggtgaaacg gttgctacag gaacaacccc gtgtaattgc 240 ttacgatcac gaacattacc caggtggttc tgagagcagt tctagctctt gtgctaccgc 300 gcctatttta cgtaatcttt cgcaagatca gtgcgattca gagaatattg gatgcagttc 360 tagcgcctgt tctccgtctg aaattgtgaa agttacaagg caggtagtgg aagttgaacg 420 tggtctttac cgggacattt taccacaatt cggcatggat gttgtgaaga aattcgccgt 480 catgtcagtg actgtagtag caggtcccgt ccttacgctt tcatcacctg tggtggtgac 540 gtttggaaca ggcttaattg ccgtatcttt ggtgaaacgg ttgctacagg aacaaccccg 600 tgtaattgct tacgatcacg aacattaccc aggtggttct gagagcagtt ctagctcttg 660 tgctaccgcg cctattttac gtaatctttc gcaagatcag tgcgattcag agaatattgg 720 atgcagttct agcgcctgtt ctccgtctga aattgtgaaa gttacaaggc aggtagtgga 780 agttgaacgt ggtctttacc gggacatttt tcaggacaac gaaatcccat cagtcatgga 840 agagaaactg cagaaactcc tttactctga gggtgagaag attcgaagac gttgccaatt 900 tgaagcatca acgatgcact cacgcaaagt aaaggttccg gaggtaggta ctatcccaga 960 tatccaaact tggttcgatg ctacgtttcc tggtaactcc gttaggtttt ctgatttcga 1020 cggttatact gtcgctacgg aggacattaa catggatgtt caggattgta gacttaagtt 1080 cgggaagatt tttcgacctt atgaatttaa ggaatcactg aaaccagtgc tgaggacagc 1140 aatgcctgag aagcgacagg gtagtttgat tgaaagtgtg ctggcctttc gtaaaagaaa 1200 tttggctgcg cccagattgc aaggggcttt gaatgaatgg cacacaattg agaatgtgct 1260 aaagaaggcg ttaaaggtat tcttctttga agatttaatt gatcgaacgg atcattgcac 1320 ttacgagtca gcactcagat ggtgggataa acaatcagtg acggctcgag cgcagctcgt 1380 ggcggaccaa cggaggttat gtgatgttga cttcacgact tataacttca tgataaaaaa 1440 tgatgtaaag ccgaagttag atctaacacc tcaagttgaa tatgcagctt tgcagactgt 1500 tgtgtatcct gataagatag tcaatgcttt ctttggtccg atcataaagg agattaatga 1560 acggatcatc agagcgctta gacctcatgt ggtctttaat tctcgtatga ctgctgatga 1620 actgaatgaa acagctgcct ttttgacacc tcacaagtac agagccttag agattgattt 1680 ttcaaaattt gataaatcaa agactgggct tcatatcaaa gctgtcattg gactctataa 1740 gctctttggc ctggatggcc tgttaaaagt actctgggaa aaatcgcaat atcagactta 1800 cgtgaaagat agaaacttcg gtctcgaagc atatctatta tatcagcaaa agtcaggaaa 1860 ttgtgacact tacggttcga acacctggtc tgccgccttg gcgttgttag attgtcttcc 1920 tttggaagat gcacatttct gtgtatttgg tggtgatgat tcattgatat tgtttgatca 1980 gggatacata atttccgacc catgccgaca acttgccggt acttggaatc ttgaatgtaa 2040 agtgttcgac tttaagtacc ccgcgttttg tggtaaattt ctgctgtgca tagatggaaa 2100 atatcagttt gttccagatg cggcaaaatt tatcacaaaa ttaggtagaa ctgatgtgag 2160 agatgtagaa gttttgagtg agatttatat ctctatcaat gacaattaca aatcttacaa 2220 agactttaag gtacttgatg ctttggataa ggctttagtg gatagatatc gatcccctta 2280 tagtgctatt tctgctttgg tttctttatg ttatcatatc tttgacttta ataagtttaa 2340 gttgctgttt aattgtgaag ggaaatttgt ggataagaag ctgagaaagg acttcgagtg 2400 gtgaactcta ggtcctgatg tttaaatcta ctgtatttac cttcgcatga tggctacttt 2460 ctcttgtgcg tgttgtggta ccttaactac aagtacttac tgtggtaaga gatgtgagcg 2520 aaagcatgta tattctgaaa caagaaataa gagattggaa ctttacaaga agtatctatt 2580 ggaaccgcaa aaatgcgccc tgaatggaat cgttggacac agttgtggaa tgctatgctc 2640 cattgcggaa gaggcttgtg atcaactgcc aatcgtgagt aggttctgtg gccaaaagca 2700 tgcggatctg tatgattcac ttctaaaacg ttctgaacag gagttatttc ttgaatttct 2760 ccagaagaag atgcaggagc tgaaactttc tcatatcgta aaaatggcta agcttgaaag 2820 tgaggttaac gcgatacgta agtccgtagc ttcttctttt gaagattctg ttggatgtga 2880 tgattcttct tccgtttctg agttttaaaa aaaaaaaaaa aaaaatgttt gatcagatca 2940 ttcaaatctg atggtgccca tcaaccatat gatgggagtg tttacaagtc cactataatc 3000 gaacttgaaa aaccttgcct gaattggaaa ccatgaatct taacggattc tggagagaaa 3060 atttaggaat tggtatgtaa gctacaactt ccggtagctg cgtcacactt taggagtgtg 3120 catactgagc cgaagctcag cttcggtccc ccaagggaag acca 3164 //