ID U12626; SV 1; linear; genomic DNA; STD; PLN; 4828 BP. XX AC U12626; XX DT 07-SEP-1994 (Rel. 40, Created) DT 14-FEB-2020 (Rel. 143, Last updated, Version 6) XX DE Zea mays copia-like retrotransposon Hopscotch polyprotein (gag/pol) genes, DE complete cds. XX KW . XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea. XX RN [1] RP 1-4828 RA White S.E., Habera L., Wessler S.R.; RT "Hopscotch, a retrotransposon insertion in the wxK mutant allele of maize"; RL Unpublished. XX RN [2] RP 1-4828 RX DOI; 10.1073/pnas.91.25.11792. RX PUBMED; 7991537. RA White S.E., Habera L.F., Wessler S.R.; RT "Retrotransposons in the flanking regions of normal plant genes: a role for RT copia-like elements in the evolution of gene structure and expression"; RL Proc. Natl. Acad. Sci. U.S.A. 91(25):11792-11796(1994). XX RN [3] RP 1-4828 RA White S.E.; RT ; RL Submitted (25-JUL-1994) to the INSDC. RL Shawn E. White, Department of Botany, University of Georgia, Athens, GA RL 30602, USA XX DR MD5; fbbd7ca1f2ba438dd095eb33d9f2aee3. XX FH Key Location/Qualifiers FH FT source 1..4828 FT /organism="Zea mays" FT /mol_type="genomic DNA" FT /note="contains ICTV exemplar Zea mays Hopscotch virus" FT /db_xref="taxon:4577" FT mobile_element 1..4828 FT /mobile_element_type="transposon:retrotransposon Hopscotch" FT repeat_region 1..231 FT /rpt_type=LONG_TERMINAL_REPEAT FT gene 284..4603 FT /gene="gag/pol" FT CDS 284..4603 FT /codon_start=1 FT /gene="gag/pol" FT /product="copia-like retrotransposon Hopscotch polyprotein" FT /db_xref="GOA:V9GZT4" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR013103" FT /db_xref="InterPro:IPR025724" FT /db_xref="InterPro:IPR036397" FT /db_xref="UniProtKB/TrEMBL:V9GZT4" FT /protein_id="AAA57005.1" FT /translation="MAMQSSLSTSAIPTSFAIPVSEKLTKGNYLLWKAQVLPAIRAAQL FT DDILTGVEICPPKTISDASDRTVTVANPAYGRWIARDQAVLGYLLSSLSREVLSSVVNC FT STSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASSVAEYFAKMRGFADELGAAGKP FT LDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYTQLLSYENRMHLQTGSSSLMQ FT SSANARSPGRGMSWGRSGGRGFSRGRGRGRGPSRGGFQSFGRGNNYSGATDADTSSRPR FT CQVCSRVGHTALNCWYRFDENYVPDQRSANSAAHQNGSNVPWYTDTGATDHITGDLDRL FT TMHDKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSVLHVPSTHKNLISVHRLT FT NDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLYPLPPHPDLRLKHNFSSTRVPLEHW FT HKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCDACLQAKAHQLPYTISMSQSSAPLML FT IFSDVFGPAIDSFGRYKYYVSFIDDYSKFTWIYLLRHKSDVYKSFCEFQHLVERMFGRK FT IIAFQSDWGGEYEKLNAHFKTIGIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSS FT MPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYN FT QHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDEHVFPFASLNKNAGVKY FT TSEVLLLPHDSCGNNMLTDHANNLPGSSSPLPFLAQHFLQGNSEVPTSNNTAMALPASG FT PNEVSVPPALVPSSLVPAASPAPTGVSANAEPAPEADSLSSGPPVATESVTGVPDADPL FT LQAPGSSVAHQTPDSAPLSAAAPRTRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSE FT ALADPQWRAAMEAEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARL FT VAKGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVY FT MKQPPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYN FT AHSTAIYILVYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGL FT LLCQEKYARDLLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYL FT TLTRPDLSYAINRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLSAFSD FT ADWAGCPDDRKSTGGYALFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQS FT LLHELGIRLTGIPRLWCDNLGATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLI FT STNDQVADGFTKALTIGRLNEFRRQSQPRSVVIEGGY" FT repeat_region 4418..4828 FT /rpt_type=LONG_TERMINAL_REPEAT XX SQ Sequence 4828 BP; 1132 A; 1232 C; 1080 G; 1384 T; 0 other; tattagacag atatattcca gattgtaatc ttgatttctt tccaactaac cggacgtaga 60 tagcacagga tctccttgat ttttggcgct gatatcgctt gtgatacggc agcctctgtt 120 agcctccggt tagagtttgg tacgatgtaa caacctccgc tgctttgtca gcctataaat 180 acatatacgc ggctgctcaa gggcagtaga gaacgcttcc taattccttc atggtataag 240 agccagtgtt tttttttcgt gagagatctc cacagagtct ctcatggcga tgcagtcatc 300 gttgtctacc tccgccatcc ccacctcctt tgccatacct gttagtgaaa agctcacaaa 360 gggcaattat cttctctgga aggcgcaggt cctgccggcc atccgcgccg cccagcttga 420 tgacatcttg actggcgtcg agatctgtcc acccaagacc atatcagatg caagtgacag 480 gactgtcacg gtggccaatc cggcctatgg tcgatggatt gctcgcgatc aagcagtcct 540 tggctatttg ctctcatcgc tttcacgcga ggtgctgagt agcgttgtca attgttccac 600 gtcagcctcg gtatggacaa ctctatccga gatgtattct tcgcactcgc gcgcccgcaa 660 ggtcaatacg cggatcgcgc tggccacaac caagaaaggt gcttcgtcgg tggccgaata 720 ctttgcaaag atgcgtggct ttgctgatga acttggtgct gcgggtaaac cccttgatga 780 cgaggagttc gtgtcttttc tgttgaccgg acttgatgaa gatttcaacc cactagtcac 840 tgctgtggtg gctcgttcag atccaattac tccaggtgat ctgtatacac aactccttag 900 ttacgagaac aggatgcatc tccagactgg ttcatcctcg cttatgcagt cttcggcaaa 960 tgcgcggtct ccgggacgcg gcatgtcttg ggggcgctct ggtggccgtg gcttctctcg 1020 tggccgaggc cgcggcaggg gtccctctcg aggtggtttt cagtcgttcg ggcgaggcaa 1080 caattattct ggcgctacag atgcagatac ctcctcaagg ccacgatgcc aagtgtgctc 1140 aagagttggc catacggccc taaattgctg gtacaggttc gatgagaatt atgtgccgga 1200 tcagcgctcg gcgaattctg ccgctcatca aaatggctcc aatgttcctt ggtacacgga 1260 caccggagcg acagatcata tcacaggaga tctggatcgt ttgacgatgc atgacaagta 1320 caccggcact gatcagatca ttgctgccaa tggtacaggt atgactatta gcaatattgg 1380 taatgctatt gttcccacat catcccgttc attgcattta cgttctgttc ttcatgttcc 1440 atccacccac aagaatctca tatcggttca tagacttacc aatgataacg atgtgtttat 1500 tgaattccat tcatctcatt ttcttattaa ggatcggcaa acgaaggccg tactgctcca 1560 tggcaaatgt agagacggcc tctacccact accgccacat cctgatcttc ggttgaagca 1620 caattttagt tctactcgtg tccctttgga gcattggcac aagcgtcttg gacacccgtc 1680 tcgtgatatt gttcatcgtg tcattagcaa taataatttg ccatgtctta gtaataattc 1740 cacaacttca gtttgtgatg catgtttaca agccaaggca catcagttgc cttatactat 1800 ttccatgagt caatctagtg cacctctcat gcttattttt tcagatgtgt ttggtccagc 1860 aattgattcc tttggtcgct ataaatacta cgtgagtttc atcgatgatt acagtaaatt 1920 cacctggatt taccttcttc gtcacaaatc cgatgtttac aagtcctttt gtgaatttca 1980 gcacttagta gaacggatgt ttggtcgcaa aatcattgcc tttcagtcag attggggcgg 2040 cgagtatgaa aaactcaatg cccacttcaa aactatcggc atccaccacc aagtgtcgtg 2100 tcctcacacc caccagcaga atggtgcagc cgaacgaaag caccgtcaca ttgtcgaggt 2160 tgggcttgcc ctccttgctc aatcatctat gccgctcaag tattgggatc atgctttctt 2220 ggctgctgtt tatttgataa accgcacacc atccaaaact attgcccacg acactccctt 2280 gcacaagttg acaggtgcca ctccggatta ctcctcactt cgtattttcg ggtgtgcatg 2340 ctggccaaac ttgcgcccat ataaccagca taagctccaa tttaggtcta cccggtgtgt 2400 tttcttaggg tatagtaaca tgcataaagg attcaagtgc ctggatattt caaccggccg 2460 aatctatatt tcacgcgacg ttgtttttga tgagcatgtt tttccatttg cctctcttaa 2520 taaaaatgct ggggtcaaat acacatctga agttctcctt ttgccacatg actcttgtgg 2580 gaataatatg cttactgatc atgctaataa tctgcctggt tccagttcac cgctcccctt 2640 tcttgcgcag cattttttgc agggcaattc cgaagttccc acatcaaata atacagccat 2700 ggcgctgccc gcttccggac cgaatgaagt ttccgtgccc cctgcactgg tcccgtcgtc 2760 actagtccct gcagcgtcac ctgcaccaac aggtgtgtcg gccaatgcgg aaccagcacc 2820 tgaggccgac tcactgtcgt ctggtccccc tgtcgcaaca gaaagtgtga caggtgttcc 2880 cgatgcggat ccgctcctgc aggctcccgg atcgtctgtg gctcaccaga ctcctgattc 2940 ggcgccatta tctgctgctg cgccgcgcac ccgcttgcaa cacggaatta gcaagccgaa 3000 acagttcact gatggaactg tccgatatgg taatgctgca gctcgtatta ctgaaccatc 3060 ttccgtctct gaagcccttg ctgatccaca gtggcgagct gctatggagg ctgaatttca 3120 ggcgctacag aagaataaca cttggacatt ggtgcccccg gaccgcactc gaaatctcat 3180 cgactgtaag tgggttttca aagttaaata taatgctgac ggctccattg acaggctcaa 3240 ggctcgtctg gttgctaagg gatttaagca acaatatggc attgattacg atgatacgtt 3300 cagccctgtc gtcaagcact ctactattcg tctcgtgctt tccttagcag tttctcagaa 3360 atggagtctt cgtcagctgg acgtgcaaaa tgctttcctg catggaattc ttgaagaaac 3420 tgtttatatg aaacagcctc caggttttgc tgacacaact catcctaatt atcactgtca 3480 tctgcagaaa tcgttgtatg ggctgaaaca acgtccgcga gcttggtatt cccggttgag 3540 tgagaagctt caaagcttgg gattcgtacc ttctaaagct gatgtttctc tttttattta 3600 caatgcacat tccactgcta tctatatttt ggtgtatgtt gatgacatta tcattacggg 3660 atcctctccg cacgccattg ataatgttct tgccaagctc aaggatgatt ttgccattaa 3720 ggatctaggt gatctccact attttcttgg tattgaagtt cacagaaagg gtgacggtct 3780 ccttctatgt caagaaaaat atgctcgtga tctcttgaaa cgggtcggca tggaatgttg 3840 caaaccagtt catactcctg ttgccacaag tgaaaagctc tcggcgtctg ctggtacctt 3900 gctttctcct gaagagacta caaaatatcg gagtgttgtt ggtgcattgc agtatctaac 3960 actcactcga cctgatctct cttatgcaat caatagagtt tgtcagttcc ttcacgcccc 4020 gaccgacctt cactggacag cagttaaacg tattcttcgc aatatacaac atactattgg 4080 cctcggtctc actatcagac catctctgtc cctaatgcta agtgcattct cagatgcgga 4140 ctgggccggt tgccctgatg acaggaagtc tacaggcggg tatgcgctct tccttggtcc 4200 taatttgatc tcctggaact ctaagaaaca aagcacggtg tcacgatcaa gcacagaagc 4260 tgaatataag gccatggcca atgcgactgc cgaagttatc tggcttcagt cccttctcca 4320 cgagcttggt attcggctca ccggtattcc tcgcctctgg tgcgataatc tgggtgctac 4380 atacttgtct tccaagccaa tttttaatgc tcgcacgaag cacattgaag tcgacttcca 4440 ttttgttcgt gacagagtgc tcagcaagaa gctggatatt cgactgatat ctactaatga 4500 tcaagtggcg gacggtttca caaaagctct cactattgga cggctaaacg agtttagacg 4560 ccaatctcaa cctcgatcgg ttgtgattga ggggggatat tagacagata tattccagat 4620 tgtaatcttg atttctttcc aactaaccgg acgtagatag cacaggatct ccttgatttt 4680 tggcgctgat atcgcttgtg atacggcagc ctctgttagc ctccggttag agtttggtac 4740 gatgtaacaa cctccgctgc tttgtcagcc tataaataca tatacgcggc tgctcaaggg 4800 cagtagagaa cgcttcctaa ttccttca 4828 //