ID U09508; SV 1; linear; genomic RNA; STD; VRL; 3258 BP. XX AC U09508; XX DT 26-MAY-1994 (Rel. 39, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 8) XX DE Potato virus Y necrotic strain polyprotein (NIa, NIb, capsid protein) gene, DE partial cds. XX KW . XX OS Potato virus Y OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-3258 RX PUBMED; 7954114. RA Dhar A.K., Singh R.P., Boucher A.; RT "Molecular cloning and sequencing of the capsid and the nuclear inclusion RT protein genes of a North American PVYN isolate"; RL Can. J. Microbiol. 40(9):798-804(1994). XX RN [2] RP 1-3258 RA Singh R.P.; RT ; RL Submitted (10-MAY-1994) to the INSDC. RL Rudra P. Singh, Fredericton Research Centre, Agriculture and Agri-Food RL Canada, 850 Lincoln Road, Fredericton, New Brunswick, E3B 4Z7, Canada XX DR MD5; 6210529911204c7d0087d36f9a914beb. XX CC On Jun 9, 1994 this sequence version replaced gi:497315. XX FH Key Location/Qualifiers FH FT source 1..3258 FT /organism="Potato virus Y" FT /host="Solanum tubersum L." FT /lab_host="Nicotiana tabacum L." FT /strain="necrotic (N27-92)" FT /mol_type="genomic RNA" FT /clone="NM12" FT /tissue_type="leaf" FT /db_xref="taxon:12216" FT CDS <1..2931 FT /codon_start=1 FT /product="polyprotein" FT /function="coat protein, nuclear inclusion" FT /note="nuclear inclusion proteins NIa and NIb and capsid FT protein" FT /db_xref="GOA:Q85104" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q85104" FT /protein_id="AAB50167.1" FT /translation="MEVRSMHGTFRVKNLHSLSVLPIKGRDIIIIKMPKDFPVFPQKLH FT FRAPIQNERICLVGTNFQEKHASSIITETSTTYNVPGSTFWKHWIETNDGHCGLPVVST FT ADGCLVGIHSLANNVQTTNYYSAFDEDFESKYLRTNEHNEWTKSWVYNPDTVLWGPLKL FT KESTPKGLFKTTKLVQDLIDHDVVVEQAKHSAWMYEALTGNLQAVATMKSQLVTKHVVK FT GECRHFKEFLTVDSEAEAFFRPLMDAYGKSLLNREAYIKDIMKYSKPIDVGIVDCDAFE FT EAINRVIIYLQVHGFQKCNYITDEQEIFKALNMKAAVGAMYGGKKKDYFEHFTEADKEE FT IVMQSCLRLYKGSLGIWNGSLKAELRCKEKILANKTRTFTAAPLDTLLGGKVCVDDFNN FT QFYSKNIECCWTVGMTKFYGGWDKLLRRLPENWVYCDADGSQFDSSLTPYLINAVLIIR FT STYMEDWELGLQMLRNLYTEIIYTPISTPDGTIVKKFRGNNSGQPSTVVDNSLMVVLAM FT HYALIKEGVEFEEIDSTCVFFVNGDDLLIAVNPEKESILDRMSQHFSDLGLNYDFSSRT FT RRKEELWFMFHRGLLIEGMYVPKLEEERIVSILQWDRADLPEHRLEAICAAMIESWGYF FT KLTHQIRRFYSWLLQQQPFSTIAQEGKAPYIASMALKKLYMDRTVDEEELKAFTEMMVA FT LDDEFECDTYEVHHQGNDTIDAGGSTKKDAKQEQGSIQPNLIKEKEKDVNVGTSGTHTV FT PRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDI FT GETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAH FT FSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMK FT AAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM" FT mat_peptide 571..2127 FT /product="NIb" FT mat_peptide 2128..2928 FT /product="capsid protein" XX SQ Sequence 3258 BP; 1016 A; 560 C; 788 G; 894 T; 0 other; atggaagtgc gatcaatgca tggaacattc agagtgaaga atttgcatag cttgagtgtt 60 ttaccgatca aaggcagaga cattatcatc ataaagatgc caaaggactt ccctgttttc 120 ccacaaaaac tgcacttccg agctccaata caaaatgaga ggatttgttt ggttggaact 180 aactttcaag aaaaacatgc gtcgtcaatc atcacagaaa cgagtactac atacaatgtg 240 ccgggcagca ctttttggaa gcattggatt gaaacaaatg atgggcattg tggattacca 300 gtagtgagta cagctgatgg atgtctggtt ggaatacaca gcttggcgaa taatgtgcaa 360 accacgaatt attattcagc ttttgatgag gattttgaaa gcaagtatct ccgaactaat 420 gaacacaatg agtggaccaa atcgtgggta tataacccag atactgtgtt gtggggtcca 480 ttgaagctca aggagagtac ccctaaaggc ttgtttaaga caacaaaact cgtacaggat 540 ttaattgatc atgatgttgt tgtagagcaa gctaaacatt ctgcgtggat gtatgaggct 600 ctaacaggga atttgcaagc tgtggcgaca atgaagagtc agctagtgac aaagcacgtg 660 gtcaaagggg agtgtcggca cttcaaagag ttcttaactg tggattcgga agcagaagct 720 ttcttcaggc ctttgatgga tgcttatggg aagagcttat taaatagaga agcatatata 780 aaggacataa tgaaatactc aaagcctatt gatgttggaa tagtagactg cgatgctttt 840 gaagaggcta tcaatagggt tattatttat ctgcaagtgc atggtttcca gaaatgcaat 900 tacatcaccg atgagcagga aattttcaaa gctctcaata tgaaagctgc tgtcggagct 960 atgtatggag gcaagaagaa agactacttt gagcatttta ctgaggcgga taaagaggaa 1020 attgttatgc aaagttgctt gcgattgtac aagggctcgc ttggcatatg gaatggatca 1080 ttgaaagcag aacttcggtg caaagagaag atacttgcaa ataagacaag gacattcact 1140 gctgcacctt tagatactct actgggtgga aaggtgtgcg ttgatgattt taataatcaa 1200 ttctactcaa agaacattga atgctgctgg actgttggaa tgactaagtt ttatggaggt 1260 tgggacaaat tgcttcggcg tctacctgaa aattgggtgt actgcgatgc tgatggttca 1320 caattcgata gttcactcac cccataccta attaatgctg ttctcatcat cagaagcaca 1380 tacatggaag attgggaatt ggggttgcaa atgttgcgca atttgtacac agaaataatt 1440 tacacaccaa tctcaactcc agatggaaca attgtcaaga agtttagagg taataatagc 1500 ggtcaacctt ctaccgttgt ggataattct ctcatggttg tccttgctat gcattacgct 1560 ctcattaagg agggcgttga gtttgaagaa atcgacagca cgtgtgtatt ctttgttaat 1620 ggtgatgact tattgattgc tgtgaatccg gagaaagaga gcattctcga tagaatgtca 1680 caacatttct cagatcttgg tttgaactat gatttttcat cgagaacaag aaggaaggag 1740 gaattgtggt tcatgttcca cagaggcctg ctaatcgagg gcatgtacgt gccaaagctt 1800 gaagaagaga gaattgtatc cattctgcaa tgggatagag ctgatctgcc agagcacaga 1860 ttagaagcga tttgtgcagc aatgatagaa tcctggggtt attttaagtt aacgcaccaa 1920 atcaggagat tctactcatg gttgttgcaa cagcaacctt tttcaacgat agcgcaggaa 1980 ggaaaagctc catacatagc gagcatggca ttgaagaagc tgtacatgga taggacagta 2040 gatgaggagg aactgaaagc tttcactgaa atgatggttg ccttggatga tgaatttgag 2100 tgcgatactt atgaagtgca ccatcaagga aatgacacaa tcgatgcagg aggaagcact 2160 aagaaagatg caaaacaaga gcaaggtagc attcaaccaa atctcatcaa ggaaaaggaa 2220 aaggacgtga atgttggaac atctggaact cacactgtgc cacgaattaa agctatcacg 2280 tccaaaatga gaatgcccaa gagtaagggt gcaactgtac taaatttgga acacctactc 2340 gagtatgctc cacagcaaat tgacatctca aatactcgag caactcaatc acagtttgat 2400 acatggtatg aagcagtaca acttgcatac gacataggag aaactgaaat gccaactgtg 2460 atgaatgggc ttatggtttg gtgcattgaa aatggaacct cgccaaatat caatggagtt 2520 tgggttatga tggacggaga tgaacaagtc gaatacccac tgaaaccaat cgttgagaat 2580 gcaaaaccaa cacttaggca aatcatggca catttctcag atgttgcaga agcgtatata 2640 gaaatgcgca acaaaaagga accatatatg ccacgatatg gtttagttcg taatctgcgc 2700 gatggaagtt tggctcgcta tgcttttgac ttttatgaag ttacatcacg gacaccagtg 2760 agggctagag aggcacacat tcaaatgaag gccgcagctt taaaatcagc tcaatctcga 2820 cttttcggat tggatggtgg cattagtaca caagaggaaa acacagagag gcacaccacc 2880 gaggatgttt ctccaagtat gcatactcta cttggagtga agaacatgtg attgtagtgt 2940 ctttccggac gatatataga tatttatgtt tgcagtaagt attttggctt ttcctgtact 3000 acttttatcg taattaataa tcgtttgaat attactggct gataggggtg gtatagcgat 3060 tccgtcgttg cagtgacctt agctgtcgtt tctgtattat tatggtttgt ataaaagtgc 3120 cgggttgttg ttgttgtggc tgatctatcg attaggtgat gttgcgattc gtcgtagcag 3180 tgactatgtc tggatttagt tacttgggtg atgctgtgat tctgtcatag cagtggctgt 3240 aaacttcaat caggagac 3258 //