ID U05347; SV 1; linear; unassigned RNA; STD; VRL; 3786 BP. XX AC U05347; XX DT 08-MAR-1994 (Rel. 38, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 3) XX DE Barley stripe mosaic virus CV42 RNA-alpha segment alpha protein gene, DE complete cds. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RP 2040-2459 RX DOI; 10.1006/viro.1994.1271. RX PUBMED; 8178475. RA Weiland J.J., Edwards M.C.; RT "Evidence that the alpha a gene of barley stripe mosaic virus encodes RT determinants of pathogenicity to oat (Avena sativa)"; RL Virology 201(1):116-126(1994). XX RN [2] RP 1-3786 RA Edwards M.C.; RT ; RL Submitted (24-JAN-1994) to the INSDC. RL Michael C. Edwards, U.S. Dept. of Agriculture, Agricultural Research RL Service, Northern Crop Science Laboratory, 1307 18th Street North, Fargo, RL ND 58105-5677, USA XX DR MD5; 7c364f0be8a451c7b6c3fb42e88f4f61. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX FH Key Location/Qualifiers FH FT source 1..3786 FT /organism="Barley stripe mosaic virus" FT /chromosome="RNA-alpha" FT /host="Hordeum vulgare" FT /lab_host="Hordeum vulgare" FT /strain="CV42" FT /mol_type="unassigned RNA" FT /clone="pCV42alpha18" FT /db_xref="taxon:12327" FT CDS 92..3508 FT /codon_start=1 FT /product="alpha protein" FT /db_xref="GOA:Q65713" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q65713" FT /protein_id="AAA19829.1" FT /translation="MASDEIVRNLISREEVMGNLISTASSSVRSPLHDVLCSHVRTIVD FT SVEKKAVSRKHVDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYL FT LDMVPMKETFVYDIGGNWFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYMRGS FT KDKPLRLLSRYQNILREQAARTTAFMAGDVNAGDLDGEVFCENTFQDCVRRVPEGFLKT FT AIAVHSIYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGR FT IKFFFANDPNAGYSHDLKDYLKYVEKAYVDIEDGVFAIELMQMRGDTMFFKITDVTAAM FT YHMKYRGMKRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKN FT KEKDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENS FT IISYFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYADFDLTTFDICD FT PVLYVEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAAKMAQKVTGTVTEC FT EKDLGHLVQPVKEILAQLVMPNVVRALCKPRSPKSPLNISIPRSTPSHSSSDSEQSMTE FT EASLSIAGSVPTWEIASRKDLTFQRIDEDMSRRTGMPPRPKVTSSYNMNARAEFLYYQL FT CSVICERAQILSVIEDFRQNLIFSDKVAVTLNARFYSFKTLKPGWVFKTPSHSEVGHSY FT AVHFDFKTVGIDLEESLAFCRMVPISWDKSGNYIATTPHFPERHGYYVICDNTKLCNNW FT LIYNKLVDVYASVADRPLRFELIDGVPGCGKSTMILNRCDIRREVVVGEGRNATDDLRE FT RFKRKKNLNSKIANHRVRTLDSLLLAEGPCVPQADRLHFDEALKVHYGAIMFCADKLGA FT SEILAQGDRAQLPMICRVEGIELQFQSPDYSKTIINPKLRSYRIPGDVAFYLSAKEFYK FT VKGIPQKVTTFNSVKRSMYARGETTPDRFVSLLDVPVRKDTHYLTFLQAEKESLMSHLI FT PKGVKKESISTIHEAQGGTYENVILVRLQRTPNEIYPGGLRSAPYIVVGTSRHTKTFTY FT CSVTDDKLLLDIADVGGIAHTPIRTFESHIV" FT misc_feature 2215..2454 FT /note="Pathogenicity of BSMV strain CV42 to oat (Avena FT sativa) maps to this region" FT /experiment="experimental evidence, no additional details FT recorded" XX SQ Sequence 3786 BP; 1124 A; 710 C; 882 G; 1070 T; 0 other; gtatgtaagt tgcctttggg tgtaaaagtt cttgcatgca cataatcgta atcgattctt 60 cttgatctct aaacaacact ttcccgttag catggctagc gatgagattg tccgtaatct 120 gatctcccgt gaggaggtga tgggtaattt gattagcaca gcttccagtt cagtaaggtc 180 acccttacat gacgtactgt gctcgcacgt aaggaccatc gtcgattccg tggaaaagaa 240 agcggtcagt cgcaagcatg ttgatgtacg gcgcaacatc tcttctgaag agttgcagat 300 gttgataaat gcatatcctg aatatgccgt ttcatcttca gcttgtgaat ctggtactca 360 tagcatggcg gcttgttttc gatttctgga gacagaatac ctcttagata tggttccaat 420 gaaagagact tttgtctatg acattggcgg caactggttt tctcacatga agtttcgtgc 480 tgatagagaa attcattgtt gctgtccaat cttatccatg agggactctg aaagactgga 540 aacacgcatg atggcaatgc aaaaatatat gcgtggatcg aaagacaaac cgttacgctt 600 gttaagccgt tatcaaaata tcctgcgtga acaagcggcg agaacaactg cctttatggc 660 aggtgatgtg aatgcgggtg atcttgatgg agaggtgttt tgtgagaaca cttttcagga 720 ctgtgtgaga agagtgcccg aaggtttttt gaagacagct atagcagttc atagcattta 780 cgatatcaaa gtggaggaat ttgcgtctgc tttgaaaaga aaaggtataa cacaggctta 840 tgggtgcttc ctgtttcctc ctgccgtatt gataggccag aaggaaggta ttttaccttc 900 cgtggacggt cattatttgg tggagaatgg taggattaag tttttctttg caaatgatcc 960 gaatgccggt tactcgcacg accttaagga ttatctgaag tatgtggaaa aggcctatgt 1020 ggatatagag gatggggtgt ttgctattga gctgatgcaa atgcgaggtg ataccatgtt 1080 ctttaagatc acggacgtca ccgcagcaat gtatcatatg aaatatagag gaatgaaacg 1140 tgatgaaaca ttcaaatgca ttccattgct gaagaactca tctgttgtcg tacctttatt 1200 ttcatgggac aaccgttctt taaagatcac aagtggttta ttaccgcgaa ctttggttga 1260 gcagggtgcg gcatttatca tgaaaaacaa ggaaaaggac ttgaacgttg ccgtgttgaa 1320 aaattacctt tccgctgtga acaattcata tattttcaac ggatctcaag ttagagatgg 1380 tgtgaaaatt gctccggatt taatctccaa attggcagtg actctgtacc tgagagaaaa 1440 agtctatcga caaagagaaa attcaatcat aagttatttt gaacaggaaa tgcttcacga 1500 tcccaacttg aaagccatgt ttggagactt tctgtggttt gttccaaata ctctttcgag 1560 tgtttggaag aacatgcgaa aatcactgat ggaatggttt ggctacgcag attttgactt 1620 gactactttt gatatttgcg atcccgttct ctatgtagag atagtggatc ggtataagat 1680 cattcaaaaa gggcgaattc cacttggcga attctttgat tgtcacgaag aatgcgagaa 1740 ttacgaacta cgtgagaagg agaaaaatga cctagcggcg aaaatggctc agaaggtaac 1800 agggacggtg accgaatgcg agaaggacct tggacatctt gttcaaccgg taaaagagat 1860 actggctcaa ctcgtgatgc ccaacgttgt cagagcgctg tgtaaacctc gtagcccaaa 1920 gtcgcccttg aacattagta tcccacggtc aactccatca cactcaagtt cagattctga 1980 acaatctatg actgaagaag cgagcttatc cattgcgggt agcgtaccaa catgggaaat 2040 tgcatctagg aaagatctaa cctttcagcg aattgacgaa gatatgtctc gacgaactgg 2100 tatgccgcca agaccaaaag taacttctag ttacaacatg aatgccagag ccgagtttct 2160 ttactatcaa ctgtgtagcg tgatttgtga aagggcccag attttgagtg ttatcgaaga 2220 ctttcgtcaa aatttgatat tctcagataa agtggctgtt acactgaatg ctagattcta 2280 cagtttcaag acgttgaaac ctggatgggt gttcaagact ccatcgcata gtgaagtagg 2340 ccacagttat gcagtacatt ttgacttcaa gacagtcgga attgacttgg aagaaagctt 2400 agctttttgc cgaatggtac cgatttcatg ggataaaagc ggcaactaca tcgcgacaac 2460 tcctcatttc cccgagagac acggttacta cgtgatatgt gacaacacta aattgtgtaa 2520 caattggctt atttacaata agttagttga tgtctacgca tcagtggctg acagacctct 2580 gaggttcgag ttgattgacg gagttcctgg ctgtggaaag tctaccatga ttttaaaccg 2640 ctgcgatatc cgacgcgaag ttgttgttgg tgaaggacga aatgcgactg atgacttaag 2700 ggagaggttc aagcgtaaga aaaatttgaa tagtaaaatt gctaatcata gagttcgaac 2760 gcttgacagc ttattacttg ctgaaggacc ttgcgtgccg caagctgata ggcttcattt 2820 tgatgaagct ctaaaagttc attacggcgc tataatgttc tgtgctgata agcttggcgc 2880 ctcagaaatt cttgctcaag gagatagggc tcaattgcca atgatctgtc gtgtagaagg 2940 aattgaactt caatttcagt ctcctgatta ctcgaagacg atcataaatc ccaagctacg 3000 atcataccgt atccctgggg atgttgcctt ctatctgagt gctaaggagt tttacaaagt 3060 taaaggaata cctcaaaagg ttacaacttt taacagtgtg aaacgctcca tgtacgctag 3120 aggtgaaaca actccggaca gattcgtgag tttgcttgat gttccagtga gaaaagacac 3180 ccactatcta accttcttac aagctgagaa ggaaagtttg atgagtcatt tgattccaaa 3240 gggtgtgaag aaagagtcta tttcaacgat tcatgaggca caaggtggta cctatgaaaa 3300 tgtgattttg gtccgtttgc aacggacacc caacgaaatt tatccgggtg gacttaggtc 3360 cgccccttac attgttgttg ggacttcaag gcatacaaaa actttcactt attgtagtgt 3420 tacggacgat aagttgcttt tagatatcgc cgatgtcggt ggtattgcac acacgcctat 3480 tcgtactttt gaatctcata tagtttgaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3540 aaaaaaaatg tttgatcaga tcattcaaat ctgatggtgc ccatcaacca tatgatggga 3600 gtgtttacaa gtccactata atcgaacttg aaaacaatgc ctgaattgga aaccatgaat 3660 cttaacggat tctggagaga aaatttagga attggtatgt aagctacaac ttccggtagc 3720 tgcgtcacac tttaagagtg tgcatactga gccgaagctc agcttcggtc ccccaaggga 3780 agacca 3786 //