ID U03387; SV 1; linear; genomic RNA; STD; VRL; 6311 BP. XX AC U03387; L22518; XX DT 22-JAN-1994 (Rel. 38, Created) DT 02-OCT-2012 (Rel. 114, Last updated, Version 12) XX DE Turnip vein-clearing virus strain OSU, complete genome. XX KW . XX OS Turnip vein-clearing virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 68-3391 RX DOI; 10.1007/BF01379132. RX PUBMED; 7998835. RA Lartey R.T., Lane L.C., Melcher U.; RT "Electron microscopic and molecular characterization of turnip RT vein-clearing virus"; RL Arch. Virol. 138(3-4):287-298(1994). XX RN [2] RC Erratum:[Gene 1997 Apr 1;188(2):295] RP 1-67,3392-6311 RX DOI; 10.1016/0378-1119(95)00674-5. RX PUBMED; 8543186. RA Lartey R.T., Voss T.C., Melcher U.; RT "Completion of a cDNA sequence from a tobamovirus pathogenic to crucifers"; RL Gene 166(2):331-332(1995). XX RN [3] RP 1-6311 RA Melcher U.K.; RT ; RL Submitted (09-NOV-1993) to the INSDC. RL Biochemistry & Molecular Biology, Oklahoma State University, NRC 246, RL Stillwater, OK 74078-0454, USA XX RN [4] RC Sequence update by submitter RP 1-6311 RA Melcher U.K.; RT ; RL Submitted (18-FEB-1998) to the INSDC. RL Biochemistry & Molecular Biology, Oklahoma State University, NRC 246, RL Stillwater, OK 74078-0454, USA XX DR MD5; 07997b39326076f94350412503ab1721. DR EuropePMC; PMC5282660; 28137291. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX CC On Feb 18, 1998 this sequence version replaced gi:619581. XX FH Key Location/Qualifiers FH FT source 1..6311 FT /organism="Turnip vein-clearing virus" FT /host="Brassica rapa" FT /lab_host="Nicotiana tabacum" FT /strain="OSU" FT /mol_type="genomic RNA" FT /note="possibly an isolate of ribgrass mosaic virus" FT /db_xref="taxon:29272" FT CDS 68..4873 FT /codon_start=1 FT /transl_except=(pos:3389..3391,aa:Tyr) FT /product="RNA replicase read-through component" FT /note="contains RNA polymerase; stop codon at 3389..3391 is FT suppressed under certain conditions and expressed as FT tyrosine" FT /db_xref="GOA:Q88920" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q88920" FT /protein_id="AAC02783.1" FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIYSYVNRLKRQQRPVPEYQ FT RAAFNNYAENPHFVHCDKPFQQCELTTAYGTDTYAVALHSIYDIPVEEFGSALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQKSGDNLSFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWH FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITTGRMSRREIMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKKFQKFDRTTNELIWTSLCDALMGVIPSVKETLVRGGFVKVAEQALEI FT KVPELYCTFADRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKNVDPDMAAKVVVAIMKSELTLPFKKPTEEEISESLKPGEGSCAEHKEVLSLQ FT NDAPFPCVKNLVEGSVPAYGMCPKGGGFDKLDVDIADFHLKSVDAVKKGTMMSAVYTGS FT IKVQQMKNYIDYLSASLAATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDDGKPVCDETWFRVAVSSDSLIYSDMGKLKTLTSCSPN FT GEPPEPNAKVILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANQAGVIRA FT DKDNVRTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTKQIPF FT ICRVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYDGAVMCTSAVERSVKAE FT VVRGKGALNPITLPLEGKILTFTQADKFELLEKGYKDVNTVHEVQGETYEKTAIVRLTS FT TPLEIISSASPHVLVALTRHTTCCKYYTVVLDPMVNVISEMEKLSNFLLDMYRVEAGVQ FT YQLQIDAVFRDSNLFVQTPKSGDWRDMQFYYDALLPGNSTILNEFDAVTMNLRDISLNV FT KDCRIDFSKSVQLPKEQPIFLKPKIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTID FT IEDTASLVVEKFWDSYVDKEFSGTNEMTMTRESFSRWLSKQESSTVGQLADFNFVDLPA FT VDEYKHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDSS FT KFLFYTRKTPAQIEDFFSDLDSTQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDE FT WLAEVWKQGHRKTTLKDYTAGVKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVI FT KAAFCGDDSLIYIPKGLDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVY FT YDPLKLISKLGCKHIRDVVHLEELRESLCDVASNLNNCAYFSQLDEAVAEVHKTAVGGS FT FAFCSIIKYLSDKRLFRDLFFV" FT CDS 68..3391 FT /codon_start=1 FT /product="RNA replicase component" FT /note="contains capping methyltransferase and RNA helicase FT domains" FT /db_xref="GOA:Q88920" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q88920" FT /protein_id="AAC02782.1" FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIYSYVNRLKRQQRPVPEYQ FT RAAFNNYAENPHFVHCDKPFQQCELTTAYGTDTYAVALHSIYDIPVEEFGSALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQKSGDNLSFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWH FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITTGRMSRREIMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKKFQKFDRTTNELIWTSLCDALMGVIPSVKETLVRGGFVKVAEQALEI FT KVPELYCTFADRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKNVDPDMAAKVVVAIMKSELTLPFKKPTEEEISESLKPGEGSCAEHKEVLSLQ FT NDAPFPCVKNLVEGSVPAYGMCPKGGGFDKLDVDIADFHLKSVDAVKKGTMMSAVYTGS FT IKVQQMKNYIDYLSASLAATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDDGKPVCDETWFRVAVSSDSLIYSDMGKLKTLTSCSPN FT GEPPEPNAKVILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANQAGVIRA FT DKDNVRTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTKQIPF FT ICRVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYDGAVMCTSAVERSVKAE FT VVRGKGALNPITLPLEGKILTFTQADKFELLEKGYKDVNTVHEVQGETYEKTAIVRLTS FT TPLEIISSASPHVLVALTRHTTCCKYYTVVLDPMVNVISEMEKLSNFLLDMYRVEAGVQ FT " FT CDS 4876..5679 FT /codon_start=1 FT /product="movement protein" FT /function="intercellular transport of infection" FT /db_xref="GOA:Q88921" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/Swiss-Prot:Q88921" FT /protein_id="AAC02784.1" FT /translation="MSIVSYEPKVSDFLNLSKKEEILPKALTRLKTVSISTKDIISVKE FT SETLCDIDLLINVPLDKYRYVGILGAVFTGEWLVPDFVKGGVTISVIDKRLVNSKECVI FT GTYRAAAKSKRFQFKLVPNYFVSTVDAKRKPWQVHVRIQDLKIEAGWQPLALEVVSVAM FT VTNNVVMKGLREKVVAINDPDVEGFEGVVDEFVDSVAAFKAVDNFRKRKKKVEERDVVS FT KYKYRPEKYAGPDSFNLKEENVLQHYKPESVPVLRSGVGRAHTNA" FT CDS 5603..6076 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q88922" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/Swiss-Prot:Q88922" FT /protein_id="AAC02785.1" FT /translation="MSYNITNPNQYQYFAAVWAEPIPMLNQCMSALSQSYQTQAARDTV FT RQQFSNLLSAVVTPSQRFPDTGSRVYVNSAVIKPLYEALMKSFDTRNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLSELSNGHGYMNRAEFEALLPWTTAPAT" XX SQ Sequence 6311 BP; 1810 A; 1195 C; 1586 G; 1720 T; 0 other; gtttagtttt attgcaacaa caacaacaaa ttacaataac aacaaacaaa atacaaacaa 60 caacaacatg gcacaatttc aacaaacaat tgacatgcaa actctccaag ccgctgcggg 120 acgcaacagc ttggtgaatg atttggcatc tcgtcgcgtt tacgataatg cagtcgagga 180 gctgaatgct cgttccagac gtcccaaggt tcatttctcc aaggcagtgt ctacggaaca 240 gacactgatt gcaacaaacg catatccgga gttcgagatt tcctttactc atacgcaatc 300 cgctgtgcac tccttggccg gaggccttcg gtcacttgag ttggagtatc tcatgatgca 360 agttccgttc ggttctctga cgtacgacat cggcggtaac ttttccgcgc accttttcaa 420 agggcgcgat tacgttcact gctgcatgcc taatctggat gtacgtgaca ttgctcgcca 480 tgaaggacac aaggaagcta tttacagtta tgtgaatcgt ttgaaaaggc agcagcgtcc 540 tgtgcctgaa taccagaggg cagctttcaa caactacgct gagaacccgc acttcgtcca 600 ttgcgacaaa cctttccaac agtgtgaatt gacgacagcg tatggcactg acacctacgc 660 tgtagctctc catagcattt atgatatccc tgttgaggag ttcggttctg cgctactcag 720 gaagaatgtg aaaacttgtt tcgcggcctt tcatttccat gagaatatgc ttctagattg 780 tgatacagtc acactcgatg agattggagc tacttttcag aagtccggtg ataatttaag 840 ttttttcttt cataatgaga gcactctcaa ttacacccac agttttagta atataattaa 900 gtatgtgtgt aaaacgttct ttcctgctag tcaacggttt gtgtatcata aggagttttt 960 agttactaga gtcaacactt ggtactgtaa gtttacgaga gtggatactt ttactctttt 1020 ccgtggtgtg taccataata atgtggattg cgaagagttt tacaaggcta tggacgatgc 1080 gtggcactac aaaaagacgt tagcaatgct taatgccgag aggaccatct tcaaggataa 1140 cgctgcgtta aacttttggt tcccgaaagt gagagacatg gttatcgtcc ctctctttga 1200 cgcttctatc acaactggta ggatgtctag gagagagatt atggtgaaca aggatttcgt 1260 ttatacggtc ctaaatcaca taaaaacgta tcaagctaag gctttaactt acgcaaatgt 1320 tctgtccttt gtggagtcta ttaggtctag agtgataatt aacggtgtca ctgccaggtc 1380 tgaatgggac acagacaagg caattctagg tccattagca atgacatttt tccttataac 1440 aaagttgggt catgtgcagg atgaaataat cctgaaaaag ttccagaagt tcgacagaac 1500 caccaatgag ctgatttgga caagtctctg cgatgccctg atgggggtta ttccctcggt 1560 caaggagacg cttgtgcgcg gtggttttgt gaaagtagca gaacaagcct tagagataaa 1620 ggttcccgag ctatactgta cctttgccga cagattggta ctacagtaca agaaggcgga 1680 ggagttccaa tcgtgtgatc tttccaaacc tctagaagag tcagagaagt actacaacgc 1740 attatccgag ctatcagtgc ttgagaatct cgactctttt gacttagagg cgtttaagac 1800 tttatgtcag cagaagaatg tggacccgga tatggcagca aaggtggtcg tagcaatcat 1860 gaagtcagaa ttgacgttgc ctttcaagaa acctacagaa gaggaaatct cggagtcgct 1920 aaaaccagga gaggggtcgt gtgcagagca taaggaagtg ttgagcttac aaaatgatgc 1980 tccgttcccg tgtgtgaaaa atctagttga aggttccgtg ccggcgtatg gaatgtgtcc 2040 taagggtggt ggtttcgaca aattggatgt ggacattgct gatttccatc tcaagagtgt 2100 agatgcagtt aaaaagggaa ctatgatgtc tgcggtgtac acagggtcta tcaaagttca 2160 acaaatgaag aactacatag attacttaag tgcgtcgctg gcagctacag tctcaaacct 2220 ctgcaaggtg cttagagatg ttcacggcgt tgacccagag tcacaggaga aatctggagt 2280 gtgggatgtt aggagaggac gttggttact taaacctaat gcgaaaagtc acgcgtgggg 2340 tgtggcagaa gacgccaacc acaagttggt tattgtgtta ctcaactggg atgacggaaa 2400 gccggtttgt gatgagacat ggttcagggt ggcggtgtca agcgattcct tgatatattc 2460 ggatatggga aaacttaaga cgctcacgtc ttgcagtcca aatggtgagc caccggagcc 2520 taacgccaaa gtaattttgg tcgatggtgt tcccggttgt ggaaaaacga aggagattat 2580 cgaaaaggta aacttctctg aagacttgat tttagtccct gggaaggaag cttctaagat 2640 gatcatccgg agggccaacc aagctggtgt gataagagcg gataaggaca atgttagaac 2700 ggtggattcc ttcttgatgc atccttctag aagggtgttt aagaggttgt ttatcgatga 2760 aggactaatg ctgcatacag gttgtgtaaa tttcctactg ctgctatctc aatgtgacgt 2820 cgcatatgtg tatggggaca caaagcaaat tccgttcatt tgcagagtcg cgaactttcc 2880 gtatccagcg cattttgcaa aactcgtcgc tgatgagaag gaggttagaa gagttacgct 2940 caggtgcccg gctgatgtta cgtatttcct taacaagaag tatgacgggg cggtgatgtg 3000 taccagcgcg gtagagagat ccgtgaaggc agaagtggtg agaggaaagg gtgcattgaa 3060 cccaataacc ttaccgttgg agggtaaaat tttgaccttc acacaagctg acaagttcga 3120 gttactggag aagggttaca aggatgtgaa cactgtgcac gaggtgcaag gggagacgta 3180 cgagaagact gctattgtgc gcttgacatc aactccgtta gagatcatat cgagtgcgtc 3240 acctcatgtt ttggtggcgc tgacaagaca cacaacgtgt tgtaaatatt acaccgttgt 3300 gttggacccg atggtgaatg tgatttcaga aatggagaag ttgtccaatt tccttcttga 3360 catgtataga gttgaagcgg gggtccaata gcaattacag atcgatgcag tattcaggga 3420 cagcaacttg tttgttcaga cgcccaagtc aggagattgg cgagatatgc aattttacta 3480 tgacgctctt cttcccggaa acagtactat tctcaatgaa tttgatgctg ttacgatgaa 3540 tttgagggat atttccttaa acgtcaaaga ttgcagaatc gacttctcca aatccgtgca 3600 acttcctaaa gaacaaccta ttttcctcaa gcctaaaata agaactgcgg cagaaatgcc 3660 gagaactgca ggtttgctgg aaaatttggt tgcaatgatc aaaagaaaca tgaatgcgcc 3720 ggatttgaca gggacaattg acattgagga tactgcatct ctggtggttg aaaagttttg 3780 ggattcgtat gttgacaagg aatttagtgg aacgaacgaa atgaccatga caagggaaag 3840 tttttctaga tggctttcga aacaagagtc atctacagtt ggtcagttag cggactttaa 3900 ctttgtggat ttgccggcag tagatgagta caagcatatg atcaagagtc aaccaaagca 3960 aaagttagac ttgagtattc aagacgaata tcctgcattg cagacgatag tctaccattc 4020 gaaaaagatc aatgcgattt tcggtccaat gttttcagaa cttacgagga tgttactcga 4080 aaggattgac tcttcgaagt ttctgttcta caccagaaag acacctgcac aaatagagga 4140 cttcttttct gacctagact caacccaggc gatggaaatt ctggaactcg acatttcgaa 4200 gtacgataag tcacaaaacg agttccattg tgctgtagag tacaagatct gggaaaagtt 4260 aggaattgat gagtggctag ctgaggtatg gaaacaagga cacagaaaaa cgaccttgaa 4320 agattatacg gccggagtca aaacatgtct ttggtatcaa aggaaaagtg gtgatgtgac 4380 aacctttatt ggtaatacca tcatcattgc agcctgtttg agctcaatga tccccatgga 4440 caaagtgata aaggcagctt tttgtggaga cgatagcctg atttacattc ctaaaggttt 4500 agacttgcct gatattcagg cgggcgcgaa cctcatgtgg aacttcgagg ccaaactctt 4560 caggaagaag tatggttact tctgtggtcg ttatgttatt caccatgata gaggagccat 4620 tgtgtattac gatccgctta aactaatatc taagttaggt tgtaaacata ttagagatgt 4680 tgttcactta gaagagttac gcgagtcttt gtgtgatgta gctagtaact taaataattg 4740 tgcgtatttt tcacagttag atgaggccgt tgccgaggtt cataagaccg cggtaggcgg 4800 ttcgtttgct ttttgtagta taattaagta tttgtcagat aagagattgt ttagagattt 4860 gttctttgtt tgataatgtc gatagtctcg tacgaaccta aggtgagtga tttcctcaat 4920 ctttcgaaga aggaagagat cttgccgaag gctctaacga ggttaaaaac cgtgtctatt 4980 agtactaaag atattatatc tgtcaaggag tcggagactt tgtgtgatat agatttgtta 5040 atcaatgtgc cattagataa gtatagatat gtgggtatcc taggagctgt ttttaccgga 5100 gagtggctag tgccagactt cgttaaaggt ggagtgacga taagtgtgat agataagcgt 5160 ctggtgaact caaaggagtg cgtgattggt acgtacagag ccgcagccaa gagtaagagg 5220 ttccagttca aattggttcc aaattacttt gtgtccaccg tggacgcaaa gaggaagccg 5280 tggcaggttc atgttcgtat acaagacttg aagattgagg cgggttggca gccgttagct 5340 ctggaagtag tttcagttgc tatggtcacc aataacgttg tcatgaaggg tttgagggaa 5400 aaggtcgtcg caataaatga tccggacgtc gaaggtttcg aaggtgtggt tgacgaattc 5460 gtcgattcgg ttgcagcatt taaagcggtt gacaatttca ggaagaggaa aaagaaggtt 5520 gaagaaaggg atgtagtaag taagtataaa tatagaccgg agaaatacgc cggtcctgat 5580 tcgtttaatt taaaagaaga aaatgtctta caacattaca aacccgaatc agtaccagta 5640 cttcgcagcg gtgtgggcag agcccatacc aatgcttaac cagtgcatgt cggcgttgtc 5700 gcaatcgtac caaacacaag ctgcgagaga cactgttaga cagcaattct caaacttgtt 5760 aagtgcggtt gtgacgccga gccagcggtt cccagataca gggtcccggg tgtatgttaa 5820 ctcggctgtt ataaagccgt tgtacgaggc tcttatgaag tcctttgata ctagaaatag 5880 gatcatagag acggaagagg agtcacgccc atcagcttcc gaagtagcta atgcaacaca 5940 gcgtgttgat gacgcgaccg ttgccattag aagtcaaatt cagcttttgc tgagtgagct 6000 ttctaatgga catggttata tgaatagggc agagttcgag gctttattgc catggactac 6060 tgcgcctgct acttaggcgt agtgcgcacg atagcgcata gtgtttttct ctccacttaa 6120 atcgaagaga taaacttacg gtgtaattcc gtgagggtgg cgtaaaccaa attacgcaat 6180 gttttgggtt ccattaaaat cgaaacccct tatttcctgg atcacctgtt aacgcacgtt 6240 tgacgtgtat tacagtggga ataagtaaaa gtgagaggtt cgaatcctcc ctaaccccgg 6300 gtaggggccc a 6311 //