ID S83257; SV 1; linear; genomic RNA; STD; VRL; 6611 BP. XX AC S83257; XX DT 13-MAR-1997 (Rel. 51, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 6) XX DE Odontoglossum ringspot virus isolate Cy-1 genomic sequence. XX KW . XX OS Odontoglossum ringspot virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RC GenBank staff at the National Library of Medicine created this entry [NCBI RC gibbsq 179070] from the original journal article. RP 1-6611 RX PUBMED; 8789059. RA Ikegami M., Isomura Y., Matumoto Y., Chatani M., Inouye N.; RT "The complete nucleotide sequence of odontoglossum ringspot virus (Cy-1 RT strain) genomic RNA"; RL Microbiol. Immunol. 39(12):995-1001(1995). XX DR MD5; 310f8713dac0bc6d034b88d082bc41e1. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01083; UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6611 FT /organism="Odontoglossum ringspot virus" FT /isolate="Cy-1" FT /mol_type="genomic RNA" FT /db_xref="taxon:12238" FT CDS <66..4901 FT /codon_start=1 FT /transl_except=(pos:3399..3401,aa:OTHER) FT /product="183 kDa protein" FT /db_xref="GOA:P89659" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P89659" FT /protein_id="AAB49498.2" FT /translation="AHFQQTMNNKVIEAGMGRNSLINDLAQRRVYDNAVEELNHRSRRP FT KVNFSKVISQEQIIQATNAYPEFEITFYNTQLAVHSMAGGLRALELEYLMMQIPFGSIT FT YDIGGNFSAHLYKGRDYVHCCMPNLDIRDVARHINQQDTVSTYLARLERSKRGLPVFQQ FT SAFNKYMNDPDAVCCDKRFQDCSYSVDLPGKTYAVALHSIYDIPADEFGAALLRKDVHI FT CYAAFHFSENLLLETTSAPLDEIGATFYKSGDRLSFFFQNESTLNYEHSYKNVIKYVCK FT TFFPASNRFVYHKEFMCTRVNTWFCKFTKVDTYFLFRGVYTRGEDSEQFYTAMDEAWEY FT KKTLAMLKCERTIFRDRAAVNFWFPKVKDMVIVPLFDGSVTSGKMKRSEVMVNKDFVYT FT VLNHIRTYQDKALTYKNVLSFVESIRSRVIINGVSARSEWDVDKSVLQALSMTFLLQTK FT LAEAKDQVVLKKFQKFDDTVTNLFWKQISDAVGDLFPSIKETLISGGFVKVAEQSLQIK FT TPDEYITFADKLVMEYKATEELQHLDISKPLERAEKYYNALSELSVLKECDEFDITQFK FT NLCEEKDIDPDVVAKVIVAIMKNELTLPFKNPTPEALSDALSPLPKDLDMRFDLLKLST FT CAPFPSVKTLDSGLLPKQSYGDERQFESQSVVSVSDFHLKSVESVKMKSMSSAVYTGPL FT KVQQMKNYMDYLSASISATVSNLCKVLKDVYGADPESAEKSGVYDVVKGKWLLKPKGKC FT HAWGVAELNNGEKVIVLLEWADGFPICGDWRRVAVSSDSLIYSDMGKLQTLLSCLKDGE FT PVPSDAKVTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRATK FT DNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFIN FT RVANFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNSKYDGKVLCTNDVIRSVDAEVV FT RGKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVV FT RLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVCSDLSKVSDFILDMYKVD FT AGILXQLQVGSIFKGENLFVPCPKSGYISDMQFYYDTLLPGNSTILNEYDAVTMNLREN FT NLNVKDCTIDFSKSVSVPRQQQEFFTPVIRTAAERPRSRGLLENLVAMIKRNFNSPDLT FT GILDIEDTAELVVNKFWDAYIIDELSGGNVTPMTSDAFHRWMAKQEKSTIGQLADFDFV FT DLPAIDQYKHMIKAQPKQKLDLSPQDEYAALQTIVYHSKQINAIFGPLFSELTRQLLER FT IDSSKFLFYTRKTPEQIEEFFSDLDSTVPMEVLELDISKYDKSQNEFHCAVEYLIWEKL FT GLNGFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIPM FT DKVIKAAFCGDDSMLYIPKGLDLPDIQSGANLMWNFEAKLYRKRYGYFCGRYIIHHDRG FT AIVYYDPVKLISKLGCKHIKSLDHLEEFRISLCDVSASLNNCAYYGQLNDAIAEVHKTA FT VNGSFAFCSIVKYLSDKNLFRTLFYNGSSTKG" FT CDS <66..3401 FT /codon_start=1 FT /product="126 kDa protein" FT /db_xref="GOA:P90348" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:P90348" FT /protein_id="AAB49499.1" FT /translation="AHFQQTMNNKVIEAGMGRNSLINDLAQRRVYDNAVEELNHRSRRP FT KVNFSKVISQEQIIQATNAYPEFEITFYNTQLAVHSMAGGLRALELEYLMMQIPFGSIT FT YDIGGNFSAHLYKGRDYVHCCMPNLDIRDVARHINQQDTVSTYLARLERSKRGLPVFQQ FT SAFNKYMNDPDAVCCDKRFQDCSYSVDLPGKTYAVALHSIYDIPADEFGAALLRKDVHI FT CYAAFHFSENLLLETTSAPLDEIGATFYKSGDRLSFFFQNESTLNYEHSYKNVIKYVCK FT TFFPASNRFVYHKEFMCTRVNTWFCKFTKVDTYFLFRGVYTRGEDSEQFYTAMDEAWEY FT KKTLAMLKCERTIFRDRAAVNFWFPKVKDMVIVPLFDGSVTSGKMKRSEVMVNKDFVYT FT VLNHIRTYQDKALTYKNVLSFVESIRSRVIINGVSARSEWDVDKSVLQALSMTFLLQTK FT LAEAKDQVVLKKFQKFDDTVTNLFWKQISDAVGDLFPSIKETLISGGFVKVAEQSLQIK FT TPDEYITFADKLVMEYKATEELQHLDISKPLERAEKYYNALSELSVLKECDEFDITQFK FT NLCEEKDIDPDVVAKVIVAIMKNELTLPFKNPTPEALSDALSPLPKDLDMRFDLLKLST FT CAPFPSVKTLDSGLLPKQSYGDERQFESQSVVSVSDFHLKSVESVKMKSMSSAVYTGPL FT KVQQMKNYMDYLSASISATVSNLCKVLKDVYGADPESAEKSGVYDVVKGKWLLKPKGKC FT HAWGVAELNNGEKVIVLLEWADGFPICGDWRRVAVSSDSLIYSDMGKLQTLLSCLKDGE FT PVPSDAKVTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRATK FT DNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFIN FT RVANFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNSKYDGKVLCTNDVIRSVDAEVV FT RGKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVV FT RLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVCSDLSKVSDFILDMYKVD FT AGIL" FT CDS <4882..5718 FT /codon_start=1 FT /product="31 kDa protein" FT /db_xref="GOA:Q84123" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/Swiss-Prot:Q84123" FT /protein_id="AAB49500.1" FT /translation="ALVLRDSIKISEFINLSASEKLLPSALTAVKSVRISKVDKIISYE FT NDTLSDIDLLKGVKLVENGYVCLAGLVVTGEWNLPDNCKGGVSICLVDKRMKRANEATL FT GSYHTSACKKRFTFKIIPNYSVTTADALKGIWQVMTNIRGVEMEKGFCPLSLEFVSICV FT VYLNNIKLGLREKILNVTEGGPTELTEAVVDEFVEKVPMAARLKSFRSVNKKKPSNSSK FT FVNGKSRLNSRNKLNYENGDSDVGISVVDDIVVGNGVSDIRIDDDCESFDAQSDSY" FT CDS <5724..6197 FT /codon_start=1 FT /product="18 kDa protein" FT /db_xref="GOA:Q76US7" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q76US7" FT /protein_id="AAB49501.1" FT /translation="SYTITDPSKLAYLSSAWADPNSLINLCTNSLGNQFQTQQARTTVQ FT QQFADVWQPVPTLTSRFPAGAGYFRVYRYDPILDPLITFLMGTFDTRNRIIEVENPQNP FT TTTETLDATRRVDDATVAIRSAINNLLNELVRGTGMYNQVSFETISGLTWTSS" XX SQ Sequence 6611 BP; 1973 A; 1168 C; 1431 G; 2039 T; 0 other; gtattgttcg attactacaa ttacaacaaa caattacaac aaaattcaca attcacatca 60 acatggcaca cttccaacaa acaatgaaca acaaagttat tgaggctggt atgggcagaa 120 acagcctcat taacgatttg gctcagagac gtgtttacga taacgctgtc gaagagttaa 180 accaccgttc tagacgccca aaggttaact tttccaaggt catttctcag gaacagatta 240 ttcaagctac taatgcgtac cctgagtttg aaatcacctt ttacaacact caactcgctg 300 tccactcgat ggcgggaggt cttcgagcac tcgagctcga gtatcttatg atgcaaatcc 360 catttggttc tattacgtat gacatcgggg gaaacttttc agcgcactta tataaaggac 420 gagattacgt ccattgctgt atgcctaatc ttgacattcg cgatgtggct cgtcacatca 480 atcaacaaga tactgtttct acttatctgg ctaggctcga gagaagcaag aggggtcttc 540 cggtttttca gcaatcagct tttaataaat atatgaatga ccctgatgct gtgtgctgcg 600 ataaaaggtt tcaagactgt tcttactccg ttgatcttcc gggaaaaaca tacgctgtgg 660 cgcttcatag tatctatgat attccagcgg atgagttcgg agctgcctta ttacgaaagg 720 atgttcacat atgttatgct gcttttcatt ttagtgagaa tctgcttctt gagactacgt 780 ctgctccgct cgatgagatt ggagcgacgt tttacaagtc aggggataga ttatccttct 840 tctttcaaaa tgagagcaca ttgaattatg aacattctta taaaaacgta attaaatatg 900 tttgcaagac ttttttccca gcttcaaata ggttcgtcta ccataaggaa tttatgtgca 960 ccagagttaa cacatggttt tgtaagttca ccaaggtaga tacttatttc cttttccgag 1020 gggtgtatac taggggagaa gattctgaac aattttacac tgctatggat gaagcatggg 1080 agtataagaa aactttggca atgcttaaat gcgaaaggac gatctttcgc gatcgcgctg 1140 cggttaactt ttggtttcct aaagttaagg atatggttat tgtgccgctt tttgatggtt 1200 ccgtcacttc aggaaagatg aaaagaagtg aagtcatggt taacaaggat tttgtttaca 1260 ccgttttaaa tcacatccgt acctatcaag acaaagcctt gacgtataaa aacgttcttt 1320 cctttgtcga gtcaattagg tctcgtgtga ttattaatgg tgtgtctgca agatctgagt 1380 gggatgtaga caagtctgtg ttacaggcgt tatctatgac ttttctttta cagacgaagt 1440 tggctgaagc aaaagatcaa gtcgtactta aaaaatttca aaaatttgac gatacagtta 1500 ctaatctttt ctggaaacag attagtgatg ctgtaggcga tctcttcccg tcgattaagg 1560 aaacgctcat tagcggtggg tttgtaaaag ttgctgagca atctttacaa attaaaacgc 1620 ctgatgagta tatcaccttt gcagataaac tggttatgga atataaagca actgaagagc 1680 ttcaacatct agacattagt aagcctcttg agagagccga gaaatattat aatgctttat 1740 cggaactatc ggttctcaag gaatgtgacg agtttgatat aacgcaattc aagaatttat 1800 gtgaagaaaa ggacattgat ccagacgtcg tggcgaaagt gatcgtcgcc atcatgaaga 1860 acgaactcac actgcctttt aaaaatccaa cgcctgaagc attatcggat gctctttcac 1920 cgttacccaa agacttggat atgagatttg atctgcttaa attaagtacg tgtgcaccct 1980 ttccaagcgt taaaacttta gatagtggtt tattaccaaa gcaaagctac ggtgacgaaa 2040 gacaatttga gagtcaatct gtcgtgtctg tatctgattt tcatcttaag agcgtcgagt 2100 cagtaaaaat gaaaagtatg tcgtcagcgg tctacacagg tcccctcaaa gttcaacaga 2160 tgaagaacta tatggattac ctgtccgcat cgatttcggc tactgtttca aatttatgca 2220 aggtgctaaa ggatgtctat ggtgccgacc cagagtctgc agaaaagtct ggagtctacg 2280 atgtagtgaa aggcaaatgg ttattaaaac caaagggtaa atgtcacgct tggggtgttg 2340 ccgaacttaa caatggcgag aaagtcatcg tattactcga atgggctgat ggattcccta 2400 tttgtggtga ttggcgacga gtggccgtct cttcagattc ccttatttat tcagatatgg 2460 gaaaacttca gacgttgtta agctgcttaa aggacggtga gcctgtacct tcggatgcga 2520 aagtcacgtt agtagatggc gttcctggtt gtggaaaaac aaaggaaatt cttgaaactg 2580 tgaattttga tgaggactta atacttgttc ctggtaaaga agcttgtaaa atgattatca 2640 agagagctaa taagtctgga catgtaagag cgacaaagga taatgtaaga actgtggatt 2700 cgttcttaat gcatttgaag cctaagactt ataacaaact gtttatcgat gagggtttga 2760 tgttacatac tggttgtgtt aactttctga tagcattgtc ccattgtcgt gaagcaatgg 2820 tttttggtga tactgaacaa attcccttta taaacagagt ggcaaatttc ccttatccga 2880 aacattttgc cacacttgtt tatgatcata gggaggttag gaggttatca cttagatgcc 2940 cggcagatgt tacgcatttt atgaactcca aatatgacgg gaaagtttta tgtacgaatg 3000 atgtgattcg ctcagttgat gctgaagtgg ttagagggaa aggggttttt aacccgaaaa 3060 gcaaaccgct taaagggaaa attatcacct tcactcaaag tgacaaagct gaactgaagg 3120 agcgtggtta tgaagaagtt tcaacttttg gtgaaattaa caccgtacac gaaatccaag 3180 gtgagacctt tgaagacgta tcggttgttc gtttgacacc aactccattg gagcttatat 3240 caaagagttc accgcacgtt cttgttgcat tgacaagaca tactaaaagc ttcaaatatt 3300 actctgtggt tctcgatcct ctcgtcaaag tttgctctga tttaagcaag gtgtcagact 3360 ttatactgga tatgtataag gtcgatgccg ggatcttata gcaattacag gtagggagta 3420 tcttcaaagg cgaaaatcta ttcgtaccat gtcctaaatc tggttatatt tctgatatgc 3480 aattttatta tgacactttg ttacctggaa acagcactat tttaaacgag tatgatgcag 3540 tgactatgaa tcttcgtgaa aataatctta atgtcaagga ttgcacgata gatttttcta 3600 aatctgttag tgtcccgaga caacaacaag agtttttcac accagttatt cgaactgctg 3660 ctgaacgtcc acgtagtcgt ggtctccttg aaaaccttgt ggcaatgata aaaagaaatt 3720 ttaactctcc agatttaacg ggtatattag atattgaaga tactgccgaa cttgtagtta 3780 ataagttttg ggatgcttac attattgacg aactttctgg tggaaatgtt acaccgatga 3840 cttcagatgc ctttcacagg tggatggcta agcaggagaa aagtactatt ggtcaattag 3900 ctgattttga ctttgttgat ttacccgcta ttgatcaata caaacatatg attaaggcgc 3960 aacctaaaca gaagcttgat ctcagtcctc aagatgagta tgctgcactt cagactattg 4020 tttatcactc aaagcagata aatgcaattt tcggtcctct tttttccgaa ttaactagac 4080 agcttttaga gaggatagac agtagcaaat ttttgtttta cacccggaaa acgcccgaac 4140 agattgaaga gtttttctca gatttggatt cgacggtgcc aatggaagtt ctagagttag 4200 acatttcaaa gtatgacaaa tcccagaacg aattccattg tgctgttgag tacttgattt 4260 gggagaaact tggtcttaat ggctttctcg aagaagtttg gaaacaggga cataggaaga 4320 catccttgaa ggattacacc gcaggaataa agacttgttt atggtatcaa aggaaaagcg 4380 gagatgtaac tacatttatt ggcaatacag ttattatagc tgcttgtctt gcgtcgatga 4440 tacctatgga taaggtaatt aaagctgcgt tttgtggaga tgatagtatg ctatacattc 4500 caaagggact tgatcttcct gatatccaat ctggagcgaa tttgatgtgg aacttcgagg 4560 caaaattata tcgtaagcgt tacggatatt tttgcgggag gtatattatt catcatgaca 4620 gaggtgccat tgtgtattac gaccctgtta aattaatttc taagttaggt tgtaaacaca 4680 tcaaatcttt ggatcatttg gaagaattta gaatctcgct gtgtgacgta agcgcttctt 4740 taaataattg tgcgtattat ggtcaattga atgatgcaat tgctgaggtc cacaagaccg 4800 cagtaaatgg gtcgtttgcg ttttgtagta ttgttaagta tctttccgat aaaaaccttt 4860 tcagaacctt gttctacaat ggctctagta ctaagggata gcatcaaaat ctctgaattt 4920 attaatttat cagcctctga aaaactacta ccgtcagctc taacggctgt caagtcggta 4980 cgtatttcaa aggttgataa aattataagt tacgagaatg atactttgtc tgatattgat 5040 ttgcttaaag gtgtgaagtt agtagagaat gggtatgtgt gccttgccgg cctcgtcgtc 5100 actggtgaat ggaatttacc ggacaattgc aaaggtggtg tgagtatctg tcttgtagac 5160 aaacgcatga aaagagctaa tgaagcaaca cttggctctt atcatacatc tgcttgcaag 5220 aagagattca cctttaaaat tatcccgaat tacagtgtca ccactgccga cgctcttaaa 5280 ggaatatggc aagttatgac aaatattaga ggtgtggaaa tggaaaaggg tttttgccca 5340 ttatctttgg agtttgtttc tatttgcgtg gtgtatttaa ataatataaa actcggactg 5400 agagagaaga ttttgaacgt aacagaagga gggcccaccg aacttactga agcagttgtt 5460 gatgagttcg tggagaaagt tcctatggct gctaggctca agtcttttcg ctctgtcaac 5520 aaaaagaaac ctagtaacag ttctaagttt gttaatggaa aatctagact taatagtcgt 5580 aataaattaa attatgaaaa tggtgatagt gatgttggta ttagtgttgt agatgatatt 5640 gtggttggta atggtgttag tgatattcgt attgatgatg attgtgagtc atttgacgca 5700 caatctgatt cgtattgaat atgtcttaca ctattacaga cccgtctaag ctggcttatt 5760 taagctcggc ttgggctgac cccaattcac tgatcaacct ttgtaccaat tctctgggta 5820 atcagttcca aacacaacaa gctcgaacaa ctgttcaaca gcagtttgct gatgtttggc 5880 agccggttcc tactttgacc agtaggttcc ctgcaggcgc tggttacttc agagtttatc 5940 gctatgatcc tatattagat cctttaataa ctttcttaat gggtactttt gatactcgta 6000 atagaataat cgaggtagaa aatccgcaga atccgacaac tacggaaaca ttagatgcaa 6060 ctcgtagagt tgatgatgca actgtagcaa taagatctgc aataaataat ctattaaatg 6120 agttagttag gggaactggt atgtacaatc aagtctcatt tgagacgata tctggactta 6180 cttggacctc ttcctaatca tatttaggaa aataacgttg atagtgttga actatccgtg 6240 gtgcatacga taatgcatag tggttatccc tccacttaaa tcgaagggtt tttcactgca 6300 gatatgtagg tttcctacgg tgaatataaa acttatatcc cgttgtgtac acgatagtac 6360 atagtgttta tccctccact taaatcgaag ggttttgtgt cagacgcgtg taaggagtgg 6420 tcaaccttac gacacattta aaataatgcg tccgtggtgc atacgataat gcatagtgtt 6480 tgtccctcca cttaaatcga agggttgtgt atatggatca tgcggataaa gttatactgg 6540 tgcagtataa cccgttatac acataaaatt atgagggatt cgaattcccc cttacctcgg 6600 gtagaggccc a 6611 //