ID S51557; SV 1; linear; genomic RNA; STD; VRL; 5449 BP. XX AC S51557; XX DT 23-MAR-1993 (Rel. 35, Created) DT 01-SEP-2004 (Rel. 81, Last updated, Version 3) XX DE RNA-1 segment: non-structural polyprotein [raspberry bushy dwarf virus DE RBDV, R15, Genomic RNA Complete, 5449 nt]. XX KW . XX OS Raspberry bushy dwarf virus OC Viruses; Riboviria; Idaeovirus. XX RN [1] RC GenBank staff at the National Library of Medicine created this entry [NCBI RC gibbsq 121097] from the original journal article. RP 1-5449 RX PUBMED; 1469359. RA Ziegler A., Natsuaki T., Mayo M.A., Jolly C.A., Murant A.F.; RT "The nucleotide sequence of RNA-1 of raspberry bushy dwarf virus"; RL J. Gen. Virol. 73(Pt 12):3213-3218(1992). XX DR MD5; 7deceb30ae5758bff064d2139c00447f. XX CC Region: RNA-1 segment. XX FH Key Location/Qualifiers FH FT source 1..5449 FT /organism="Raspberry bushy dwarf virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12451" FT gene 104..5188 FT /gene="non-structural polyprotein" FT CDS 104..5188 FT /codon_start=1 FT /gene="non-structural polyprotein" FT /db_xref="GOA:Q05983" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q05983" FT /protein_id="AAB24599.1" FT /translation="MECLDFSKLWFSTAAGLQQRCYYDCVAWECLGDDDLQIFISGLNR FT LIESVAVSCTGDEDLDFVVDSCNEFVTGRDLKSFFAADLPVREVSSVGCISHFIPGSVS FT GLNVSDLLDNQLYGCSVFSSDFESKLRDIRDAALSDAASGVSQLVSCHFEKDVRHLLAE FT NANSVKIPVPQKLSDDDMRILRDHFPRYELKFTQNVDGPHNMAAAHRLLETHDLLSNFP FT ADAPILDIGGNWFSHFRYGRSNVHSCCPMLDLRDNERHTHRLTMTESLMSSLRHRYAGT FT IDLDPDAHLSRKVSDSMKEFYKRWAVHPKDLIRLYAGIRDGNSSLYCHHKFGVSWNDVL FT WESERNNCLTVPEPECPFKAKYAIMVHSGYDLPLKELIGGMVQHGVVELHGTMIADPAM FT LVATSGYIPALRCNWEKSKGQIWFSFRDDSTMGYRHDWEVYSKYLTSTVVSCGKHFYVM FT ERDKYRHGVLFYSIIKCSGSLRKGDHTFFHNAWFHEMYDKYIMKVPLVKVKDLTGDEGS FT VECSWREVVMSRKLVDRVIEVCLRGVKPINFGNCDDAVHMDNLRIIQNHLLSHSQTLVL FT NGSTIIREEAIPFKDFSPVSVTIYFEILLTRYKESLSLAWFHAGLGPDFKLGSWVSSLK FT RVFYRILGFPANLLKYVLNALFRCRDKVSDMEFVKPAVEKLTVLENTYIGKSLMGDCPT FT LKEYDDSAFFNILENVGNELFNNSSTDSGKPETPEVTMTGNPNAVIAEAISYCRAEVDR FT IGKKCERILHAYQATGNCGGYLNDTDNVGVFDKMTSWVQKPKEFDHEFGWDGSSFIKLS FT WFGKIPDFVGRYLVVTDGTRVTTNLKFSRQYATIPATVTPTIKLVDGVTGCGKTTEIVR FT RYRPGILILSVCKANVDEIRRKLAAVDSKFIRTVDSYLLSPSVTGSCDELFIDEYGLSH FT PGILLLAIHISGIRKVTLFGDSEQIPFCNRLADFPLKYNSVEDVGLNFDREIRSTTYRC FT PQDITLSLQKMYKTKPIKTVSTVESSITIKPIKSEFEIPLPNAFDGPVLYICMTKHDES FT LLKLRWAKENISSEVRTVHAAQGLSYKNVVYFRLTRTDNDLYTKRKLPYHLVAISRHTD FT KIVYCTTKPEDSSDFSLSALKNTIKTSRDLTQEASGSESSYAVVFESNSEVTATKPEVC FT ENVRKAAEMNFPVSSDALYQKEVPIYGAIPDPKGKASYNPGSVIRAIEELTPGNTSIDT FT DALDELVEVGPMSLQVGSIRWDVSKISPRLFTNNKFAVPHLPTGALLRRNTSSRQVGLA FT IEKRNANVMNSQKYFDLENLANKAVERFFDFFIDMEKFSKLPTGVLGSSAEQIQTYQNK FT TGNKVTDPVCVALSPIQKYKHMIKRDVKFNLTDGAQSEYTKAATITYHQPEITQVATAI FT FGQFKTRLLACRNKFLNIPLEHDNDLSGYLTKYHLGSENNTFTEIDFSKFDKSQGEIHQ FT LIQDLILIKFGCDPEFVALWSTAHRSSSIFDQNVGIGFKTDFQRRTGDAFTFLGNSLVT FT AAMLAFVISDPDREKIRYMLVGGDDSLICSYGPIQVPLEPLGDIFNMSCKLVQPACPYF FT ASRYLIRRGDEILCVPDPYKLLVKLGRKDVPDNQASLCEIRTGLADSAKYIFDDIVKQK FT LAILVQVRYNKAAPSLYDALCTVHWALSSNTNFSKFYTVTNTSNEVRRNRRGVKIT" XX SQ Sequence 5449 BP; 1481 A; 1061 C; 1261 G; 1646 T; 0 other; atatttggtg tctggctgtt taagcgataa gaatctgctg gtctgacatc tatctcttgg 60 gtatccttat tgactacggg gattgtttac ttgagatatt cttatggagt gcttagattt 120 ctccaagctg tggttttcta cggccgctgg tctccagcaa cggtgctatt atgactgtgt 180 tgcgtgggaa tgcctaggtg atgatgatct acagatcttc atttctggcc tgaaccgcct 240 catagagtcc gttgctgttt cttgtaccgg cgacgaagat ttggacttcg tcgtggactc 300 atgtaatgag ttcgttacgg ggagagactt gaagtctttc ttcgctgctg acctccctgt 360 tagagaggtc agttctgtgg gatgtatatc tcactttatt ccaggttcgg tttctggact 420 gaatgtctcg gacttgctgg ataaccagtt gtatggttgt tctgtatttt cctccgattt 480 cgaatcgaag ctgagggata tacgggatgc ggccctttct gatgccgcgt cgggtgtttc 540 gcaactagtt agttgccatt ttgaaaaaga tgttagacac ctcttggcgg agaatgctaa 600 ttccgtcaag atccctgtac ctcagaaact cagtgatgac gatatgagga ttttaaggga 660 tcactttcct cgttatgagt tgaagttcac tcagaacgtg gacggcccgc acaatatggc 720 cgccgctcat aggttgttgg agactcatga tttgttgtcc aacttccccg cggatgcacc 780 tatcttagat ataggtggca attggttttc tcatttccgt tatgggaggt ccaatgttca 840 tagttgttgc cctatgctag atttaaggga caatgaacga catactcatc gtttaacgat 900 gactgagagt ctaatgtcca gcttgcgcca tcgctatgct ggtacaattg atctcgatcc 960 cgacgctcac ctttcaagga aggtgtctga ctctatgaaa gagttttata agcgctgggc 1020 tgtacaccct aaagatttaa ttaggttgta cgccggcata cgtgacggca actcatcgct 1080 ctattgtcac cataaatttg gtgtgtcatg gaacgatgtt ttatgggagt cggagaggaa 1140 taactgcctc actgtcccgg agcctgagtg cccttttaaa gctaagtatg ctataatggt 1200 gcattccggt tatgacctac ctctaaagga acttattgga ggcatggtac aacatggcgt 1260 ggtcgagttg catgggacta tgattgctga tcctgctatg ttagtcgcta caagtggcta 1320 tatccctgca ctgcgttgta actgggaaaa atccaaaggt caaatttggt tttctttccg 1380 agatgacagc acgatgggtt acaggcatga ctgggaggtg tactctaagt atttgacttc 1440 cacagtcgtc tcttgcggta agcactttta cgtgatggaa agagacaagt acagacacgg 1500 tgtgttattt tatagcataa ttaagtgttc tggatccctt cgtaaagggg atcacacttt 1560 ttttcataat gcctggtttc acgaaatgta cgataagtac attatgaaag tccccttggt 1620 aaaggtaaag gacttaaccg gtgatgaagg ttccgtcgag tgttcttggc gtgaagttgt 1680 gatgtctagg aaacttgtgg atagggtcat tgaggtttgc cttaggggtg taaaacccat 1740 taactttgga aactgcgacg acgctgttca catggacaat ctccggatca tccagaacca 1800 tctgctgagt cattcgcaaa cactggtttt aaatggtagt accattatta gggaggaggc 1860 gatacctttt aaggatttct ctcctgtatc cgtgaccata tattttgaaa tattgttgac 1920 gagatacaag gaatccctat ctttggcctg gtttcatgct ggtctgggtc ccgactttaa 1980 gttgggctct tgggtatcct ctttaaagag ggtgttctac cggattctag gtttcccggc 2040 taatcttcta aagtacgttt taaacgcact ttttagatgc cgtgacaagg tttcagacat 2100 ggagtttgtg aaacccgctg tcgaaaaatt gacagtgtta gagaatacct atatagggaa 2160 atctctaatg ggcgattgtc ctactctaaa agagtatgat gattcggcct tcttcaatat 2220 attggagaat gtgggcaatg agttgtttaa caactctagt accgattccg gaaaaccgga 2280 aacacccgaa gtgaccatga ccggtaatcc caatgcagta atagctgagg ctatcagcta 2340 ctgtcgagct gaggtcgata gaattgggaa gaagtgtgag agaattctcc atgcttacca 2400 ggccactggg aattgcggcg ggtacctaaa cgatactgac aatgtaggtg tgttcgataa 2460 gatgacgtcc tgggtacaaa aacccaagga gttcgatcac gaatttggat gggatggctc 2520 ctcctttatt aaattgtctt ggtttgggaa aataccggac tttgtaggaa ggtatttagt 2580 agtgactgac gggacacgtg taacgacaaa tttgaaattt tctcgtcagt atgctactat 2640 tccagcaacc gtaacaccca ccattaaatt ggttgatggt gttactggat gcgggaaaac 2700 gactgagatc gttaggcgtt atcgtcctgg gattttaatc ctaagtgtat gtaaggctaa 2760 cgtggatgag attagaagaa aattagcggc cgtggactcg aagttcatta gaaccgttga 2820 ttcttatctt ctcagcccga gtgtgaccgg aagctgtgat gaactcttca tagatgagta 2880 tggtctctcg catccgggca ttctgttact ggctatccat attagcggaa tccgaaaggt 2940 cactctcttt ggtgactctg aacagattcc tttttgcaat cgccttgctg attttcctct 3000 aaaatacaac tccgttgaag acgtgggatt gaactttgac agggaaatca ggtccactac 3060 ttatagatgc cctcaggaca tcactttgtc tttacagaaa atgtataaga caaaaccgat 3120 aaaaacggta tcgactgttg aaagttcgat aaccatcaaa ccaataaaga gcgaatttga 3180 aattcctcta cccaatgcgt ttgatggtcc tgtgttgtac atatgcatga ctaagcatga 3240 tgaaagcctt ttaaagttgc gttgggccaa agagaacatt tctagcgaag ttcgaacggt 3300 gcacgcagct caaggtttga gttataagaa cgtcgtgtat ttcaggttaa ctcgtactga 3360 taacgatttg tataccaaga gaaaactacc atatcatttg gtggcaattt ctaggcatac 3420 tgataaaatc gtttactgta ctacgaaacc tgaagactca tctgattttt ctctatctgc 3480 tctaaaaaat accatcaaaa cctctcggga tttaacccag gaggctagtg gttcagagag 3540 ctcttatgct gttgtcttcg aatcaaattc ggaggtaacc gcaaccaaac ctgaggtttg 3600 tgaaaatgtt agaaaagcag ctgagatgaa ttttcccgtt tcctctgacg ctttatatca 3660 gaaggaagtg cccatttatg gtgcaatacc cgacccgaag ggaaaagcaa gttacaatcc 3720 gggtagtgtt atcagggcca tagaagaatt gaccccaggt aacaccagca tagatactga 3780 tgctttggac gaactagttg aagttggtcc tatgagttta caagttggta gtataagatg 3840 ggatgtctct aagatatcac ctcgcttgtt tactaacaac aaattcgcag ttccgcacct 3900 accgactgga gccttgttaa ggcgtaacac gagcagtcgt caggttggat tggctataga 3960 aaagcgaaac gctaatgtca tgaatagcca aaaatatttt gatctggaaa atttagctaa 4020 taaggcggta gagagatttt tcgatttctt tatagatatg gagaaattct caaaactgcc 4080 aactggagtc ttaggctcga gtgctgaaca gatacaaacg taccagaata aaactggtaa 4140 taaggtgacg gacccagtct gtgttgcctt atccccaatt caaaaataca aacatatgat 4200 taagagggat gtcaaattca atttgactga tggtgctcaa agtgagtata ctaaagctgc 4260 caccattact tatcatcaac cagagataac tcaggttgct actgccattt ttggtcagtt 4320 taaaactaga ctgttggctt gtagaaataa gttcttaaat atacctcttg aacatgataa 4380 tgatttgagc ggatatttaa ccaaatatca tttggggagt gaaaataaca ctttcactga 4440 aattgacttt tctaaattcg ataaaagtca aggggaaatc catcaactca ttcaggattt 4500 aatcctgata aagttcggtt gtgatcccga gtttgtagcc ttatggtcta ccgcccacag 4560 aagttcttct attttcgatc aaaacgttgg aattggtttt aaaactgatt tccaaagaag 4620 aacgggcgat gcttttactt ttctgggaaa ctctttggta actgccgcca tgctggcgtt 4680 tgtcatcagt gacccagata gggagaagat taggtacatg ttggtgggtg gggacgattc 4740 tttgatctgc tcctacggtc caatacaagt acctttggaa ccattgggtg acatatttaa 4800 tatgtcttgc aagttggtac aaccagcttg tccttatttc gcgtctcgct acttgattag 4860 gagaggtgac gaaattttgt gtgttcccga cccctacaaa cttttggtga agttggggag 4920 gaaagacgtc ccggacaatc aagcatcatt atgcgagata cgtaccggat tggcagatag 4980 tgccaaatat atctttgatg atattgtgaa acagaagttg gctattcttg tacaggtgcg 5040 ctataataaa gctgcaccta gtttatatga tgccctttgc actgtgcatt gggcattatc 5100 ttctaatacc aatttctcga agttttacac tgttactaac acttccaatg aagtgcgaag 5160 gaacagaaga ggtgttaaga ttacttaata ccattttaat tctgcagcat tttcttttga 5220 ccggcttagt aataagtctt tgcctgtctc ttttcaatgc tgttattggt tttaaaacca 5280 aaaagtatct aaatcttgaa gatttaaaga taaatcttga aaaggaactt ttcaagcaca 5340 aagtcttgaa tgagtctctc tcaaggagac aaggtttctt aagcctagct cactaggctt 5400 aactcccaat ttgggagttg tccttacgga cgtttgctga gcaaacccc 5449 //