ID S46011; SV 1; linear; genomic RNA; STD; VRL; 3928 BP. XX AC S46011; XX DT 16-FEB-1993 (Rel. 34, Created) DT 01-SEP-2004 (Rel. 81, Last updated, Version 4) XX DE polyprotein [raspberry ringspot virus RRV, Genomic RNA Complete, 3928 nt]. XX KW . XX OS Raspberry ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RC GenBank staff at the National Library of Medicine created this entry [NCBI RC gibbsq 115297] from the original journal article. RP 1-3928 RX PUBMED; 1402811. RA Blok V.C., Wardell J., Jolly C.A., Manoukian A., Robinson D.J., RA Edwards M.L., Mayo M.A.; RT "The nucleotide sequence of RNA-2 of raspberry ringspot nepovirus"; RL J. Gen. Virol. 73(Pt 9):2189-2194(1992). XX DR MD5; 1982f264ef6fcd38b304e20b43b20153. XX FH Key Location/Qualifiers FH FT source 1..3928 FT /organism="Raspberry ringspot virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12809" FT gene 207..3530 FT /gene="polyprotein" FT CDS 207..3530 FT /codon_start=1 FT /gene="polyprotein" FT /db_xref="GOA:P36324" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P36324" FT /protein_id="AAB23551.1" FT /translation="MSQFWGEFPEKVIQTFQHLQVALIGDIKKCALSSPLFPELSKLDA FT HSQHHLLASFELPRFGGVTPGVMEQLRDAESELAEAKQRLLRERLHAVANRQNIPYLGD FT CMYYDAPGISQEELLQAAFLEAPTPAWEHERIRPLWPKDEWFRDARQGPYLEDYGNIPL FT GDLDTLCLAFDALVEEHWMPIYLLISTFSMFQQYGTQPLLLECAQSAGSLIPACMMTDH FT HLEPTGDRQADKEARQDYADSQDSIQSMGDFWKEFYTKDSGKKIPDSHKSRLANDPNKV FT GFTKSALFHKQPLSHSLAQTWANFRGTQDKADLVKVTMDMNIEKYTVRLPDAVRTTAGP FT LYIEWINLPRMSENSARKLAEVGWNNADICGVDLAVKSHIAVGTPVRVIISLVDGACSD FT MPTATMCAFEVNLASQNNRSLNLPLLSLPFSRLLADLHDFQNRVKIACQFRDPEGFNVG FT TPMLSFSSLEFSELKQTAFERNSLLRDSWSEIEKRACHGGGRCVASQGIVQTWEKEVNP FT PLKEYAPLVLPPVPQPKRNFIDQQTGEVVQSFMQKSRSMRFKSPSDLWSRPSVDGGSTS FT TQPPSKGSLRCENVPGCAYEVDPLHLLYYESVDVPKDTLAGTLLARIDVRAKAAIFDSA FT VWRQWVRDGCLKPKIKMRITAATSCFSGIVLGACFDAYRRIPAATKTGITASLVTGLPN FT TVWATRDTSEVEWDIDLAAVCGHTFFALEDTFGYMDFLIYVLRGNEITAVADWSIYVSF FT HVDWTQESMLATLIPTFVWPPKPTDISLLKEVWGPYRFTLDGTEAKESFAIMPGTAILH FT GQQIVRTFPRVVAAHFRSWTGKVRMSIQEVSSIFLTGTYMVGVSWNATADLADIVTRKH FT WIVKSNEIFEVDLYCPYGENPTFTGQANGKPFIIVHKLGGIVGPKDSVGTFGFMIHIHG FT LTGVYKNPTLHSGDRSVGSAWFRINNIADDNLVFNIPGRIEDIIAAAGKYDVTNYVNPT FT SLLFSVTGLHGGIIRLHITWCPNTTLGESKGTLKYMQYLYHTATENFFGDQATRGIIDQ FT DGFTIDIACGDFFGATRVGLPGEVERLGIYSSNAKSIAEIRVSFEVLSMNFYGSTIKVT FT " XX SQ Sequence 3928 BP; 966 A; 875 C; 922 G; 1165 T; 0 other; tgtctcaaat ctcaagctca ttatacgtgc tctctctctc tctctggtta cgtctcttgt 60 tcagattcca aattagtggt tcatctcaat ctctctttct ggtgacaaat agcaaagttt 120 gcttgttttc tttcaatcgc tcaaaaacaa gtttgaattt ctctcttctc ctcccacata 180 cctcttgttt ccgcgttctg gacacgatgt cccaattttg gggagaattc cccgagaagg 240 ttattcaaac cttccagcat cttcaggtcg cccttattgg cgacattaaa aaatgtgctc 300 tctcctcccc cctctttccc gagctttcca agctcgatgc tcactcccag catcatttgc 360 tggcctcctt cgagcttccc aggttcggag gtgttactcc tggcgtcatg gaacaacttc 420 gtgacgcaga gtctgagttg gcggaagcca aacaaagact ccttcgcgaa aggctacacg 480 cggtagccaa cagacaaaac atcccctacc ttggggattg tatgtactat gatgcacctg 540 gcatcagcca ggaagaactg cttcaagcag ccttcctaga ggctcccacg cctgcgtggg 600 aacatgaacg catcaggcca ttgtggccta aggatgaatg gtttagggac gctagacaag 660 gaccctacct agaggattat ggtaatatcc ctctcggtga tttagacact ttgtgtctgg 720 cttttgatgc tcttgtggag gagcattgga tgcctattta cctcctgata tccacatttt 780 ccatgtttca acagtacggc actcaaccgt tgctattgga atgtgcgcaa tctgcaggta 840 gtctgattcc tgcatgcatg atgactgacc atcatcttga gccaacgggt gatcggcagg 900 ccgacaagga agctcggcag gattatgcgg atagtcaaga ttccatacag agtatgggcg 960 atttctggaa agagttctat accaaggact caggaaagaa aatacccgat tctcataaat 1020 cgagactagc caatgatcct aacaaagttg gcttcactaa gagtgcgttg tttcataaac 1080 agcccctatc gcactctctt gctcaaactt gggcaaattt taggggtact caggataaag 1140 cggacttggt caaggtgacc atggacatga atattgaaaa atatacagtc cgtcttcctg 1200 atgctgtgag gactactgca ggtccattat acatagaatg gataaacctg ccacggatgt 1260 ctgaaaattc cgcacgcaag cttgccgaag ttgggtggaa taatgctgat atttgtggcg 1320 tggaccttgc agttaagtct catatagcag tgggtacacc tgtgcgagtt attatttcgc 1380 tcgtagatgg tgcttgttca gatatgccca ctgctacaat gtgtgctttt gaggtaaact 1440 tggcttcgca gaacaataga tctttaaatc taccactgct gagtttgcct ttttctagac 1500 ttttggctga tctacatgat ttccaaaacc gtgtaaagat cgcttgtcaa tttcgtgatc 1560 ctgaaggatt taacgtgggt acacccatgt tgagtttttc ctcccttgaa ttttctgagc 1620 taaagcaaac tgcttttgag cgcaattctc tgcttaggga ttcatggtct gaaattgaga 1680 aacgagcttg ccatggtggc ggtcgttgtg ttgcttccca gggtattgtg cagacctggg 1740 aaaaggaggt taatcctcct ctcaaagaat atgcaccgct ggttttacca cccgtccctc 1800 aaccaaaaag gaatttcata gatcaacaaa ctggggaggt ggttcaatct tttatgcaaa 1860 agtcccgctc tatgcgattc aaatcaccat ctgatttatg gagcaggccc tctgtggatg 1920 ggggatcaac atccacacaa ccgccatcaa agggttcttt gcggtgcgaa aatgtgcctg 1980 gttgtgccta tgaggtagat ccactgcatt tattgtatta tgaatccgtt gatgtgccaa 2040 aggatactct tgctggtact ttattggctc ggatcgacgt tcgagcaaag gctgcaattt 2100 ttgatagtgc tgtatggcga caatgggtta gagatggttg tctcaaacct aaaatcaaaa 2160 tgcgcattac tgcagctaca tcgtgtttct ccggtattgt attgggtgca tgttttgacg 2220 cataccgaag aatcccggca gctacaaaaa cgggtatcac cgcatccctt gtgacaggtt 2280 tgcccaatac tgtctgggca acgcgtgaca cctcagaggt cgaatgggat atcgatctcg 2340 cggcagtgtg tggacatact ttctttgcgt tggaagacac ctttggatac atggattttc 2400 tgatctatgt gctcagaggt aatgaaatca ccgctgttgc cgattggtca atatatgttt 2460 cttttcatgt cgattggaca caggaaagta tgttggccac acttatccct acttttgtat 2520 ggcccccgaa gccgactgat atatctcttc ttaaggaagt atgggggcca taccgtttta 2580 cgctggatgg taccgaggcc aaagaaagtt ttgctataat gcccggtaca gctattctcc 2640 atgggcagca gattgtgcgc acatttcccc gagtcgttgc cgcacacttc cgatcatgga 2700 ctggaaaggt caggatgtcc attcaagagg tttcctctat tttcctgacc ggaacatata 2760 tggttggtgt gtcctggaat gctactgcgg atctcgccga catcgtcact cggaaacatt 2820 ggattgtaaa gtccaatgag atttttgagg tggacttata ttgtccatat ggtgagaatc 2880 ctacctttac gggtcaggcc aatggaaagc cattcatcat agtgcataaa cttggtggaa 2940 tcgttgggcc caaggactca gttgggacgt ttggttttat gatacacata cacggcttga 3000 ctggtgtata taagaaccca acgttacaca gtggtgatcg ctctgtgggg agtgcctggt 3060 tccgcatcaa taatattgcc gatgataatc tggtgtttaa cataccaggt agaattgaag 3120 atattattgc ggctgctggg aagtatgatg tcacaaatta tgtcaatcct actagcttgc 3180 tgttttcagt tactggattg catggtggta ttatacgtct ccatattacg tggtgcccaa 3240 ataccactct tggtgagtca aagggtactt tgaagtatat gcaatatctg taccatacgg 3300 ccactgagaa tttctttggc gaccaagcaa cacgtgggat cattgaccag gatggtttca 3360 caattgatat tgcatgtggt gatttctttg gcgctacgag agttggtttg cccggggaag 3420 ttgaaagact tggcatttac agttcgaatg ccaagtccat tgctgaaatt agggtttctt 3480 ttgaagtgct atccatgaat ttctatggta gcaccatcaa agtgacgtga actgcccgca 3540 tgctcttcgg ctccgagctt aaacgagcct accaaaagct gtcctctgcc aatttagggg 3600 tagagaatcc ttgagtctag acaactcatg ggtcccagcg gtactgttaa tggtgtttct 3660 tctggtggtc acgtaccaga gcagtatgac gtccttccta tttcgacagt gaaatagggc 3720 tctttgcaga gagggttggt gtaaaggtgt gctacgactt gtttcgtaga cataataagc 3780 cacaatttat ctgtatttta atgctttgta gcgatagatg agtctttact ttctgttgct 3840 ccctctaaga ggtcgtgcct ttagcaagca cacaaaaata tgcatttgtt tttgttctta 3900 agcttcccta gtgtcgttct gtccgaac 3928 //