ID M90541; SV 1; circular; genomic DNA; STD; VRL; 8030 BP. XX AC M90541; XX DT 18-JUN-1992 (Rel. 32, Created) DT 05-FEB-2010 (Rel. 103, Last updated, Version 10) XX DE Cauliflower mosaic virus isolate NY8153, complete genome. XX KW aphid transmission protein; capsid protein; DNA-binding protein; KW inclusion body matrix protein; movement protein; reverse transcriptase. XX OS Cauliflower mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Caulimovirus. XX RN [1] RX DOI; 10.1016/0042-6822(90)90538-3. RX PUBMED; 2371775. RA Vaden V.R., Melcher U.; RT "Recombination sites in cauliflower mosaic virus DNAs: implications for RT mechanisms of recombination"; RL Virology 177(2):717-726(1990). XX RN [2] RP 1-8030 RX PUBMED; 16653000. RA Chenault K.D., Steffens D.L., Melcher U.; RT "Nucleotide Sequence of Cauliflower Mosaic Virus Isolate NY8153"; RL Plant Physiol. 100(1):542-545(1992). XX DR MD5; 325a8e331afafa60467459608f867b76. DR EPD; EP07015; CAMV_35MJ. DR EuropePMC; PMC1440423; 16571798. DR EuropePMC; PMC4498817; 26162084. XX CC Original source text: Cauliflower mosaic virus (individual_isolate CC NY8153) DNA. CC Virology 177, 717-726 (1990) reports basepairs 1-96, 624-697, CC 1474-1705, and 7950-8030. XX FH Key Location/Qualifiers FH FT source 1..8030 FT /organism="Cauliflower mosaic virus" FT /isolate="NY8153" FT /mol_type="genomic DNA" FT /db_xref="taxon:10641" FT CDS 364..1347 FT /codon_start=1 FT /product="movement protein" FT /note="ORF 1" FT /db_xref="GOA:Q00966" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/Swiss-Prot:Q00966" FT /protein_id="AAA46354.1" FT /translation="MDLYPEEKTQSKQSHNSENNMQIFKSENSDGFSSDLMISNDQLKN FT ISKTQLTLEKEKIFKMPNVLSQVMKKAFSRKNEILYCVSTKELSVDIHDATGKVYLPLI FT TKEEINKRLSSLKPEVRKTMSMVHLGAVKILLKAQFRNGIDTPIKIALIDDRINSRRDC FT LLGAAKGNLAYGKFMFTVYPKFGISLNTQRLNQTLSLIHDFENKNLMNKGDKVMTITYI FT VGYALTNSHHSIDYQSNATIELEDVFQEIGNVQQCDFCTIQNDECNWAIDIAQNKALLG FT AKTQSQIGNSLQIGNSASSSNTENELARVSQNIDLLKNKLKEICGE" FT CDS 1349..1828 FT /codon_start=1 FT /product="aphid transmission protein" FT /note="ORF 2" FT /db_xref="GOA:Q00965" FT /db_xref="InterPro:IPR004917" FT /db_xref="UniProtKB/Swiss-Prot:Q00965" FT /protein_id="AAA46355.1" FT /translation="MSITGQPHVYKKDTIIRLKPLSLNSNNRSYVFSSSKGNIQNIINH FT LNNLNEIVGRSLLGIWKINSYFGLSKDPSESKSKNPSVFNTAKTIFKSGGVDYSSQLKE FT IKSLLEAQNTRIKSLENAIQSLDNKIEPEPLTKEEVKELKESINSIKEGLKNIIG" FT CDS 1830..2219 FT /codon_start=1 FT /product="DNA-binding protein" FT /note="ORF 3" FT /db_xref="GOA:Q00967" FT /db_xref="InterPro:IPR004986" FT /db_xref="UniProtKB/Swiss-Prot:Q00967" FT /protein_id="AAA46356.1" FT /translation="MANLNQIQKEVSEILSDQKSMKSDIKAILEMLGSQNPIKESLEAV FT AAKIVNDLTKLINDCPCNKEILEALGNQPKEQLIEQPKEKGKGLNLGKYSYPNYGVGNE FT ELGSSGNPKALTWPFKAPAGWPNQF" FT CDS 2201..3667 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF 4" FT /db_xref="GOA:Q00956" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/Swiss-Prot:Q00956" FT /protein_id="AAA46357.1" FT /translation="MAESILDRTINRFWYNLGEDCLSESQFDLMIRLMEESLSGDQIID FT LTSLPSDNLQVEQVMTTTEDSISEESEFLLAIGETSEDESDSGEEPEFEQVRMDRTGGT FT EIPKEEDGEPSRYNERKRKTTEDRYFPTQPKTIPRQKQTSMGMLNIDCQTNRRTLIDDW FT AAEIGLIVKTNREDYLNPETILLLMEHKTSGIAKELIRNTRWNRTTGDIIEQVIDRMYT FT MFLGLNYSDNKVAEKIDEQEKAKIRMTKLQLCDICYLEEFTCDYEKNMYKTELADFPGY FT INQYLSKIPIIGEKALTRFRHEANGTSIYSLGFERKICKEELSKIRDLSKNEKKLKKFN FT KKCCSIEEASAEYGCKKTSTKKYHKKRYKKKYKAYKPYKKKKKFRSGKYFKPKEKKGSK FT QKYCPKGKKDCRCWICNIEGHYANECPNRQSSEKAHILQQAEKVGLQPIEAPYEGVQEV FT FILEYKEEEEETSTEESDDESSTSEDSDSD" FT CDS 3627..5669 FT /codon_start=1 FT /product="reverse transcriptase" FT /note="ORF 5" FT /db_xref="GOA:Q00962" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/Swiss-Prot:Q00962" FT /protein_id="AAA46358.1" FT /translation="MMNHLLLKTQTQTEQVMNVTNPNSIYIKGRLYFKGYKKIELHCFV FT DTGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIVGVIFKIPTV FT YQQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESM FT KKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKTEELLEKVCS FT ENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKS FT PHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSF FT DCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFC FT CVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTH FT KPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPNLAQMRQPLQAKLKENVPWKW FT TKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELI FT CRYRSGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYK FT GDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKVNS" FT CDS 5773..7335 FT /codon_start=1 FT /product="inclusion body matrix protein" FT /note="ORF 6" FT /db_xref="GOA:Q00957" FT /db_xref="InterPro:IPR009027" FT /db_xref="InterPro:IPR011320" FT /db_xref="InterPro:IPR037056" FT /db_xref="UniProtKB/Swiss-Prot:Q00957" FT /protein_id="AAA46359.1" FT /translation="MENIEKLLMQEKILMLELDLVRAKISLARANGSSQQGDLPLHRET FT PEKEEAVHSALATFTPTQVKAIPEQTAPGKESTNPLMASILPKDMNPVQTGIRLAVPGD FT FLRPHQGIPIPQKSELSSTVAPLRAESGIQHPHINYYVVYNGPHAGIYDDWGCTKAATN FT GVPGVAHKKFATITEARAAADAYTTSTQTDRLNFIPKGEAQLKPKSFAEALTSPPKQKA FT HWLTLGTKRPSSDPAPKEISFAPEITMDDFLYLYHLGRKFDGEGDDTIFTTDNEKISLF FT NFRKNADPQMVREAYAAGLIKTIYPSNNLQEIKYLPKKVKDAVKRFRTNCIKNTEKDIF FT LKIRSTIPVWTIQGLVHKPRQVIEIGVSKKVVPTESKAMESKIQIEDLTELAVKTGGQF FT IQSLLRLNDKKKIFVNMVEHDTLVYSKNIKDTVSEDQRAIETFQQRVISGNLLGFHCPS FT ICHFMERTVEKEGGSYKVHHCDKGKAIVQDASADSGPKDGPPPTRSIVEKEDVPTTSSK FT QVD" XX SQ Sequence 8030 BP; 2934 A; 1653 C; 1567 G; 1876 T; 0 other; ggtatcagag ccatgaatcg gtttaaagac caaactcaag agggtaaaac ctcatcaaaa 60 tacgaaagag ttcttaactc taaagataaa agatctttca agattaaaac tagttccctc 120 acaccggtga ccgacaggtt taccaccgta aggtttcaga acaacatcga atgcgtttac 180 gccaacttcg actctcagct caagtcgtcg tacgatggta gatctaaaaa gatcaagaat 240 ctaagcctta aaaatcttag atgtcacgaa gccttcctca ggaagtacct tctggaacaa 300 taaatctctc tgagaatagt actctattga gtatccacag ataaaataat cttctgtgtt 360 gagatggatt tgtatccaga agaaaagacc caaagcaagc aatcgcataa ttctgaaaat 420 aatatgcaaa tatttaaatc agaaaattcg gatggattct cctccgatct aatgatctca 480 aacgatcaat taaaaaatat ctctaaaacc caattaactt tggaaaaaga aaagatattt 540 aaaatgccta acgttttatc tcaagttatg aaaaaagcgt ttagcaggaa aaacgagatt 600 ctctactgcg tctcgacaaa agaattatca gtggacattc acgatgccac aggtaaggta 660 tatcttcctt taatcactaa agaggagata aataaaagac tttccagttt aaaacctgaa 720 gtcagaaaga ccatgtccat ggttcatctt ggagcggtca aaatattgct taaagctcaa 780 tttcgaaatg ggattgatac cccaatcaaa attgctttaa tcgatgatag aattaattct 840 agaagagatt gccttctcgg tgcagccaaa ggtaatctag catacggtaa gtttatgttt 900 actgtatacc ccaagtttgg aataagcctt aatacccaaa gacttaacca aaccctaagc 960 cttattcatg attttgaaaa taaaaatctt atgaataaag gtgataaagt tatgaccata 1020 acctatatcg taggatatgc attaactaat agtcatcata gcatagatta tcaatcgaat 1080 gctacaattg aactagaaga cgtatttcaa gaaattggaa atgtccagca atgtgatttc 1140 tgtacaatac agaatgacga atgtaattgg gccattgata tagcccaaaa caaagcctta 1200 ttaggagcta aaacccaatc ccaaattggt aatagtcttc aaataggaaa cagtgcttca 1260 tcctctaata ctgaaaatga attagctagg gtaagccaaa acatagatct tttaaagaat 1320 aaattaaaag aaatctgtgg agaataaaat gagcattacg ggtcaaccgc atgtttataa 1380 aaaggatact attattagac taaaaccatt gtctcttaat agtaataata gaagttatgt 1440 ttttagttcc tcaaaaggga acattcaaaa tataattaat catcttaaca acctcaatga 1500 gattgtagga agaagcttac tcggaatatg gaagatcaac tcatacttcg gactaagcaa 1560 agacccttcg gagtccaaat caaaaaaccc gtcagttttt aatactgcaa aaaccatttt 1620 taagagtggg ggggttgatt actcgagcca attaaaggaa ataaaatccc ttttagaagc 1680 tcaaaacact agaattaaaa gtctagaaaa tgcaattcaa tccttagata ataagattga 1740 accagagccc ttaactaaag aagaagttaa agagctaaaa gaatcgatta actcgatcaa 1800 agaaggatta aagaatatta ttggctgaaa tggctaatct taatcaaatc caaaaagaag 1860 tctctgaaat cctcagtgac caaaaatcca tgaaatcgga tataaaagct atcttagaaa 1920 tgctaggatc ccaaaatcct attaaagaaa gcttagaagc cgttgcagcg aaaatcgtta 1980 atgacttaac caagctcatc aatgattgtc cttgtaacaa agaaatatta gaagccttag 2040 gcaatcagcc taaagagcaa ctaatagaac aacctaaaga aaaaggcaaa ggtcttaatc 2100 taggaaaata ctcttacccc aattacggtg taggaaatga agaattagga tcctctggaa 2160 accctaaagc tttaacctgg cccttcaaag ctccagcagg atggccgaat caattttaga 2220 cagaaccatt aataggtttt ggtataatct gggagaagat tgtctctcag aaagtcaatt 2280 tgaccttatg ataaggttaa tggaagagtc cttgagcggg gaccaaatta ttgatctaac 2340 ctctctacct agtgataatt tgcaggtcga acaggttatg acaactaccg aagactcgat 2400 ctcggaagaa tcagaattcc ttctagcaat aggagaaaca tctgaagacg aaagcgattc 2460 aggagaagaa cctgaattcg aacaagttcg aatggatcga acaggaggaa cggagattcc 2520 caaagaagaa gatggtgaac catctagata caatgagaga aagagaaaga ccacggagga 2580 ccggtacttt ccaactcaac caaagaccat tccaagacaa aagcaaacgt ctatgggaat 2640 gctcaacatt gactgccaaa ccaatcgaag aaccttaatc gatgattggg cagcagaaat 2700 cggactgata gtcaagacca atagagaaga ctatctgaat ccagaaacaa tactactctt 2760 gatggaacac aaaacatcag gaatagccaa ggagttaatc cgaaatacaa gatggaaccg 2820 tactaccggc gatatcatag aacaggtgat cgatcggatg tacaccatgt tcttaggact 2880 taactactcc gacaacaagg ttgctgaaaa gatagacgag caagagaagg ccaagatcag 2940 aatgaccaaa ctccagctct gcgacatctg ctaccttgaa gaatttacat gtgattatga 3000 aaagaacatg tacaagacgg aactggcgga tttcccagga tatatcaacc agtacctgtc 3060 aaaaatcccc atcataggag aaaaagcgct aacacgcttt aggcatgaag ccaacggaac 3120 cagcatctac agcttaggtt tcgagcgaaa gatatgcaaa gaagaactat ctaaaattcg 3180 cgacttatcc aagaacgaga agaagttgaa gaaattcaac aagaagtgct gcagcatcga 3240 agaagcttca gcagaatatg gatgtaagaa gacatctacc aaaaagtatc acaagaagcg 3300 atacaagaaa aaatataagg cttataaacc ttataagaag aagaagaaat tccgatccgg 3360 aaaatacttc aagcccaaag agaagaaggg ctcaaagcaa aagtattgcc caaaaggcaa 3420 gaaagactgc aggtgttgga tctgcaatat cgaaggtcat tacgccaacg aatgtcctaa 3480 tcgacaaagc tcggaaaagg ctcacatcct tcaacaagca gaaaaagttg gcctccagcc 3540 cattgaagct ccctatgaag gagttcaaga agtattcatc ttagaataca aagaagagga 3600 agaagaaacc tctacagaag aaagcgatga tgaatcatct acttctgaag actcagactc 3660 agactgagca ggtgatgaac gtcaccaatc ccaattcgat ctacatcaag ggcagactct 3720 acttcaaggg atacaagaag atagagcttc actgttttgt agacacggga gcaagcttat 3780 gcatagcatc caagttcgtc attccagaag aacattgggt caatgcagaa agaccaataa 3840 tggtcaaaat agcagatgga agctcaatca ccatcagcaa agtctgcaaa gacatagact 3900 tgatcatagt cggcgtgata ttcaaaattc ccaccgtcta tcagcaagaa agtggcatcg 3960 atttcataat cggcaacaac ttctgtcagc tatatgaacc attcatacag tttacggata 4020 gagttatctt cacaaagaac aagtcttatc ctgttcatat tgcgaagcta accagagcag 4080 tgcgagtagg caccgaagga tttcttgaat caatgaagaa acgttcaaag actcaacaac 4140 ctgagccggt gaacatttcg acaaacaaga tagaaaatcc gctagaagaa attgctattc 4200 tttcagaggg gaggaggtta tcagaagaaa aactcttcat cactcaacaa agaatgcaaa 4260 aaaccgaaga actacttgag aaagtatgtt cagaaaatcc attagatcct aacaagacta 4320 agcaatggat gaaagcttca atcaagctca gcgacccaag caaagctatc aaggttaaac 4380 ccatgaagta tagcccaatg gatcgtgaag aatttgacaa gcaaatcaaa gagttactgg 4440 accttaaagt cattaagccc agtaaaagcc ctcacatggc accagccttc ttggtcaaca 4500 atgaagccga gaacggaaga ggaaacaaac gtatggtagt gaactacaaa gctatgaata 4560 aagccaccgt aggagacgca tacaatcttc ccaacaaaga cgagttactt acactcattc 4620 gaggaaagaa gatcttttct tccttcgact gtaagtcagg attctggcaa gttctgcttg 4680 atcaagaatc aagacctcta acggcgttca catgtccaca aggtcactac gaatggaatg 4740 tggtcccttt cggcctaaag caggcaccat ccatattcca gagacacatg gacgaagcat 4800 ttcgtgtgtt cagaaagttc tgttgcgttt atgtcgacga cattgtcgta ttcagtaaca 4860 acgaagaaga tcatctactt cacgtagcaa tgatcttaca aaagtgcaat cagcatggaa 4920 ttatcctttc caagaagaaa gcacaactct tcaagaagaa gataaacttc cttggtctag 4980 aaatagatga aggaacacat aagcctcaag gacatatttt ggaacatatc aacaagttcc 5040 cagataccct tgaagacaag aagcaacttc agagattctt aggcatccta acatatgcct 5100 ctgattatat cccgaatcta gctcaaatga gacagcctct gcaagccaag cttaaagaaa 5160 atgttccatg gaaatggaca aaagaggaca ccctctacat gcaaaaggtg aagaaaaatc 5220 tgcaaggatt tcctccacta catcatccct taccagaaga gaagctgatc atcgaaaccg 5280 atgcatcaga cgactactgg ggaggtatgt taaaagctat caaaattaac gaaggtacta 5340 atactgagtt aatttgcaga taccgatctg gaagctttaa ggctgcagaa aggaattacc 5400 acagcaatga caaagagaca ttggcggtaa taaatactat aaagaaattc agtatttatc 5460 taactcctgt tcattttctg atcaggacag ataatactca tttcaagagt tttgttaatc 5520 tcaattacaa aggtgattca aaacttggaa gaaacatcag atggcaagca tggcttagcc 5580 actattcatt tgatgttgaa catattaaag gaaccgacaa ccactttgcg gacttccttt 5640 caagagaatt caataaggtt aattcctaat tgaaatccga agataagatt cccacacact 5700 tgtggctgat atcaaaaggc tactgcctat ataaacacat ctctggagac tgagaaaatc 5760 agacctccaa gcatggagaa catagaaaaa ctcctcatgc aagagaaaat actaatgcta 5820 gagctcgatc tagtaagagc aaaaataagc ttagcaagag ctaacggctc ttcgcaacaa 5880 ggagacctcc ctctccaccg tgaaacaccg gaaaaagaag aagcagttca ttctgcactg 5940 gccactttta cgccaactca agtaaaagct attccagagc aaacggctcc tggtaaagaa 6000 tcaacaaatc cgttgatggc tagtatcttg ccaaaagata tgaacccagt tcaaactggg 6060 ataaggcttg cagtgccagg ggacttttta cgtcctcatc agggaattcc aatcccacaa 6120 aaatctgagc ttagcagcac agttgctcct ctcagagcag aatcgggtat tcaacaccct 6180 catatcaact actacgttgt gtataacggt ccacacgccg gtatatacga tgactggggt 6240 tgtacaaagg cggcaacaaa cggcgttccc ggagttgcac acaagaagtt tgccactatt 6300 acagaggcaa gagcagcagc tgacgcgtac acaacaagta cgcaaacaga caggttgaac 6360 ttcatcccca aaggagaagc tcaactcaag cccaagagct ttgcagaggc cttaaccagc 6420 ccaccaaagc aaaaagccca ctggctcacg ctaggaacca aaaggcccag cagtgatcca 6480 gccccaaaag agatctcctt tgccccggag atcaccatgg acgatttcct ctatctctac 6540 catctaggaa gaaagttcga cggagaaggt gacgatacca tcttcaccac tgataatgag 6600 aagattagcc tcttcaattt cagaaagaat gctgacccac agatggttag agaggcctac 6660 gcagcaggtc tcatcaagac gatctacccg agtaataatc tccaggagat caaatacctt 6720 cccaagaagg ttaaagatgc agtcaaaaga ttcaggacta actgcatcaa gaacacagag 6780 aaagatatat ttctcaagat cagaagtact atcccagtat ggacgattca aggcctcgtt 6840 cataaaccaa ggcaagtaat agagattgga gtctctaaga aagtagttcc tactgaatca 6900 aaggccatgg agtcaaaaat tcagatcgag gatctaacag aactcgccgt gaagactggc 6960 ggacagttca tacagagtct tttacgactc aatgacaaga agaaaatctt cgtcaacatg 7020 gtggagcacg acactctcgt ctactccaag aatatcaaag atacagtctc agaagaccaa 7080 agggctattg agacttttca acaaagggta atatcaggaa acctcctcgg attccattgc 7140 ccatctatct gtcacttcat ggaaaggaca gtagaaaagg aaggtggctc ctacaaagtc 7200 catcattgcg ataaaggaaa ggctatcgtt caagatgcct ctgccgacag tggtcccaaa 7260 gatggacccc cacccacgag gagcatcgtg gaaaaagaag acgttccaac cacgtcttca 7320 aagcaagtgg attgatgtga tatctccact gacgtaaggg atgacgcaca atcccactat 7380 ccttcgcaag actcttcctc tatataagga agttcatttc atttggagag gacacgctga 7440 aatcaccagt ctctctctac aaatctatct ctctctattt tctccataat aatgtgtgag 7500 tagttcccag ataagggaat taggattctt atagggtttc gctgatgtgt tgagcatata 7560 agaaaccctt agtatgtatt agtattagta agatacttct atcaataaaa tttctaattc 7620 ctaaaaccaa aatccagtac taaaatccag atctcctaaa gtccctatag atctatgtcg 7680 agaatataaa ccagacacga gacgactaaa cctggagccc agacgccgat tgaagctaga 7740 agtaccgctt aggcaggagg ccgttaggga aaagatgcta aggcagggtt ggttacgttg 7800 actcccccgt aggtttggtt taaatatgat gaagtggacg gaaggaagga ggaagacaag 7860 gaaggataag gttgcaggcc ctgtgcaagg taagaagatg gaaatttgat agaggtacgt 7920 tactatacct atactataag ctaagggaat gcttgtattt accctatata ccctaataac 7980 cccttatcga tttaaagaaa taatccgcat aagcccccgc ttaaaaaatt 8030 //