ID M86379; SV 1; linear; genomic RNA; STD; VRL; 7690 BP. XX AC M86379; XX DT 22-APR-1992 (Rel. 31, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Feline calicivirus, complete genome. XX KW capsid precursor protein; complete genome; nonstructural protein. XX OS Feline calicivirus OC Viruses; Riboviria; Caliciviridae; Vesivirus. XX RN [1] RX DOI; 10.1007/BF01317185. RX PUBMED; 1731695. RA Carter M.J., Milton I.D., Turner P.C., Meanger J., Bennett M., RA Gaskell R.M.; RT "Identification and sequence determination of the capsid protein gene of RT feline calicivirus"; RL Arch. Virol. 122(3-4):223-235(1992). XX RN [2] RP 1-7690 RX DOI; 10.1016/0042-6822(92)91231-I. RX PUBMED; 1529544. RA Carter M.J., Milton I.D., Meanger J., Bennett M., Gaskell R.M., RA Turner P.C.; RT "The complete nucleotide sequence of a feline calicivirus"; RL Virology 190(1):443-448(1992). XX DR MD5; a5fd57e438f8fbffcc67c38a1db2da37. DR EuropePMC; PMC103897; 9847396. DR EuropePMC; PMC113000; 10516074. DR EuropePMC; PMC1317165; 16333083. DR EuropePMC; PMC136211; 12021375. DR EuropePMC; PMC1797550; 17151126. DR EuropePMC; PMC1933329; 17459935. DR EuropePMC; PMC2045375; 17687017. DR EuropePMC; PMC2795755; 19961620. DR EuropePMC; PMC2815582; 19940055. DR EuropePMC; PMC3457129; 22855496. DR EuropePMC; PMC3519611; 23190937. DR EuropePMC; PMC3648151; 23487472. DR EuropePMC; PMC3707591; 23788542. DR EuropePMC; PMC3768834; 24031864. DR EuropePMC; PMC4155582; 25189577. DR EuropePMC; PMC416503; 15163740. DR EuropePMC; PMC4517720; 26196075. DR EuropePMC; PMC4752659; 26811440. DR EuropePMC; PMC4928471; 27375966. DR EuropePMC; PMC5312078; 28196955. DR EuropePMC; PMC5524728; 28790989. DR EuropePMC; PMC5635571; 29017551. DR EuropePMC; PMC6116245; 30115859. DR EuropePMC; PMC6175694; 29548718. DR EuropePMC; PMC6298994; 30560882. DR EuropePMC; PMC88960; 11148001. DR GOA; P28711. DR InterPro; IPR007996; Vesivirus_VP2. DR PDB; 6GSI; EM. DR UniProtKB/Swiss-Prot; P28711; VP2_FCVF9. XX CC Reference Arch. Virol. (1992) refers to basepair 3310 to basepair CC 7690 of the genome. See Ac. # Z11536 for more features. XX FH Key Location/Qualifiers FH FT source 1..7690 FT /organism="Feline calicivirus" FT /mol_type="genomic RNA" FT /db_xref="taxon:11978" FT CDS 20..5311 FT /codon_start=1 FT /standard_name="ORF 1" FT /product="nonstructural protein" FT /function="2C like protein, protease, and RNA polymerase" FT /note="putative" FT /db_xref="GOA:P27409" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="PDB:2M4H" FT /db_xref="UniProtKB/Swiss-Prot:P27409" FT /protein_id="AAA79326.1" FT /translation="MSQTLSFVLKTHSVRKDFVHSVKLTLARRRDLQYIYNKLSRTIRA FT EACPSCASYDVCPNCTSGDVPDDGSSTMSIPSWEDVTKSSTYSLLLSEDTSDELCPEDL FT VNVAAHIRKALSTQSHPANAEMCKEQLTFLLVMAEAMLPQRSRASIPLHQQHTAARLEW FT REKFFSKPLDFLLERVGVSKDILQTTAIWKIILEKACYCKSYGEQWFTAAKQKLREMKN FT FESDTLKPLIGGFIDGLRFLTVDNPNPMGFLPKLIGLVKPLNLAMIIDNHENTISGWII FT TLTAIMELYNITECTIDIITSVITAFYDKIGKATKFYSCVKALFTGFRSEDVANSFWYM FT AAAILCYLITGLIPNNGRFSKIKACLAGATTLVSGIVATQKLAAMFATWNSESIVNELS FT ARTVALSELNNPTTTSDTDSVERLLELAKILHEEIKIHTLNPIMQSYNPILRNLMSTLD FT GVITSCNKRKAIARKRQVPVCYILTGPPGCGKTTAAQALAKKLSDQEPSVINLDVDHHD FT TYTGNEVCIIDEFDSSDKVDYANFVIGMVNSAPMVLNCDMLENKGKLFTSKYIIMTSNS FT ETPVKPSSKRAGAFYRRVTIIDVTNPFVESHKRARPGTSVPRSCYKKNFSHLSLAKRGA FT ECWCKEYVLDPKGLQHQSMKAPPPTFLNIDSLAQTMKQDFLLKNMAFEAEDGCAEHRYG FT FVCQQEEVETVRRLLNAVRARMNATFTVCVGPETSHSIGCTAHVLTPNETFNGKKFVVS FT RCNEASLSALEGNCVKSALGVCMSDKDLTHLCHFIKGKIVNDSVRLDELPANQHVVTVN FT SVFDLAWAVRRHLTLAGQFQAIRAAYDVLTVPDKIPAMLRHWMDETSFSDDHVVTQFVT FT PGGIVILESCGGARIWALGRNVIRAGGVTATPTGGCVRLMGLSAPTMPWSEIFRELFSL FT LGRIWSSVKVSALVLTALGMYASRFRPKSEAKGKTKLKIGTYRGRGVALTDDEYDEWRE FT HNASRKLDLSVEDFLMLRHRAALGADDNDAVKFRSWWNSRTKMANDYEDVTVIGKGGVK FT HEKIRTNTLKAVDRGYDVSFAEESGPGTKFHKNAIGSVTDVCGEHKGYCIHMGHGVYAS FT VAHVVKGDSFFLGERIFDLKTNGEFCCFRSTKILPSAAPFFSGKPTRDPWGSPVATEWK FT PKMYTTTSGKILGCFATTSTETHPGDCGLPYIDDNGRVTGLHTGSGGPKTPSAKLVVPY FT VHIDMKTKSVTAQKYDVTKPDISYKGLICKQLDEIRIIPKGTRLHVSPAHTEDYQECSH FT QPASLGSGDPRCPKSLTAIVVDSLKPYCENVEGPPHDVLHRVQKMLIDHLSGFVPMNIS FT SETSMLSAFHKLNHDTSCGPYLGGRKKDHMANGEPDKQLLDLLSAKWKLATQGIALPHE FT YTIGLKDELRPVEKVSEGKRRMIWGCDVGVATVCAAAFKGVSDAITANHQYGPIQVGIN FT MDSPSVEALFQRIKSAAKVFAVDYSKWDSTQSPRVSAASIDILRYFSDRSPIVDSASNT FT LKSPPVAIFNGVAVKVSSGLPSGMPLTSVINSLNHCLYVGCAILQSLEAKAIPVTWNLF FT STFDIMTYGDDGVYMFPIMYASISDQIFGNLSSYGLKPTRVDKSVGAIEPIDPDSVVFL FT KRTITRTPQGIRGLLDRSSIIRQFYYIKGENSDDWKSPPKHIDPTSRGQQLWNACLYAS FT QHGLEFFNKVYRLAERAVEYEELHFEPPTYASALDHYNSQFNGVEARSDQIDSSGMTAL FT HCDVFEV" FT CDS 5314..7329 FT /codon_start=1 FT /standard_name="(ORF2) cpP76" FT /product="capsid precursor protein" FT /function="structural protein" FT /db_xref="GOA:P27406" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="PDB:6GSI" FT /db_xref="UniProtKB/Swiss-Prot:P27406" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAA79327.1" FT /translation="MCSTCANVLKYYDWDPHFKLVINPNNFLSVGFCSNPLMCCYPELL FT PEFGTVWDCDRSPLEIYLESILGDDEWASTFDAVDPVVPPMHWGAAGKIFQPHPGVLMH FT HLIGKVAAGWDPDLPLIRLEADDGSITAPEQGTMVGGVIAEPSAQMSTAADMATGKSVD FT SEWEAFFSFHTSVNWSTSETQGKILFKQSLGPLLNPYLEHLAKLYVAWSGSIEVRFSIS FT GSGVFGGKLAAIVVPPGVDPVQSTSMLQYPHVLFDARQVEPVIFCLPDLRSTLYHLMSD FT TDTTSLVIMVYNDLINPYANDANSSGCIVTVETKPGPDFKFHLLKPPGSMLTHGSIPSD FT LIPKTSSLWIGNRYWSDITDFVIRPFVFQANRHFDFNQETAGWSTPRFRPISVTITEQN FT GAKLGIGVATDYIVPGIPDGWPDTTIPGELIPAGDYAITNGTGNDITTATGYDTADIIK FT NNTNFRGMYICGSLQRAWGDKKISNTAFITTATLDGDNNNKINPCNTIDQSKIVVFQDN FT HVGKKAQTSDDTLALLGYTGIGEQAIGSDRDRVVRISTLPETGARGGNHPIFYKNSIKL FT GYVIRSIDVFNSQILHTSRQLSLNHYLLPPDSFAVYRIIDSNGSWFDIGIDSDGFSFVG FT VSGFGKLEFPLSASYMGIQLAKIRLASNIRSPMTKL" XX SQ Sequence 7690 BP; 2057 A; 1798 C; 1750 G; 2085 T; 0 other; gtaaaagaaa tttgagacaa tgtctcaaac tctgagcttc gtgcttaaaa ctcacagtgt 60 ccgaaaggac tttgtgcact ctgtcaagtt aacacttgca cggaggcgcg atcttcagta 120 tatttataac aagctctcac gcactatacg tgctgaggct tgcccttctt gtgctagtta 180 cgacgtatgt cctaactgca cctctggtga cgtcccggat gacgggtctt cgacaatgtc 240 gattccatca tgggaggatg tcacaaagtc ttcaacctac tctctcctgc tctctgagga 300 cacctccgac gagttatgcc ctgaggactt ggttaatgtg gctgctcata tccgtaaggc 360 gctatccact cagtcccacc cggctaatgc tgaaatgtgc aaagaacagc tcactttctt 420 attagtcatg gctgaggcga tgctgcccca acgatcccga gcgtcaatcc cactgcacca 480 acaacacacg gctgcacggt tggaatggag ggagaaattc ttctctaaac ctcttgactt 540 tctccttgaa agagttggtg tgtcaaaaga tattctccaa actactgcga tttggaaaat 600 tatcttggaa aaagcatgct attgtaaatc ctatggagag cagtggttca ctgctgccaa 660 acaaaagtta agggaaatga aaaactttga gagtgatacg ctaaaacctc ttattggtgg 720 atttatagat ggtctacggt tcttgaccgt ggacaaccca aacccgatgg gtttcctccc 780 aaaactcata gggcttgtaa aacccctgaa tttggcgatg attattgata atcatgaaaa 840 cacaatatct ggctggatca tcacattaac cgcaataatg gagctataca acatcaccga 900 atgcaccata gatattataa catcagtcat tacggctttc tatgataaaa ttggcaaggc 960 aaccaaattt tacagttgtg ttaaggcgct gttcactgga tttagatctg aggacgtagc 1020 gaattccttt tggtacatgg cagcagcgat tctatgttac ctgatcactg ggttaatccc 1080 aaacaacggc agattttcaa agataaaagc ttgcctggcc ggagcgacaa ctcttgtatc 1140 aggtatagtt gccacacaaa agctagctgc aatgttcgca acatggaact ctgagtccat 1200 tgttaatgag ttgtcagcaa gaactgttgc cctatcagag ctaaacaatc caacaacaac 1260 gtctgacacg gattcggtag aacgactgct agaattggct aagatcttgc atgaggagat 1320 caagattcat actctaaacc ccatcatgca atcatacaat ccaatcttga gaaatttaat 1380 gtcaaccttg gacggtgtta taacatcatg caacaagagg aaagctattg ctcggaagag 1440 acaggtgcca gtttgttaca tattaactgg cccacctgga tgtgggaaaa caaccgcagc 1500 tcaagcatta gctaagaaat tgtctgatca agagccgtcg gtaattaacc ttgatgttga 1560 tcatcatgac acatatactg gaaatgaggt atgtatcatt gatgagtttg attcgtctga 1620 caaggtagac tatgcaaatt ttgtgattgg gatggtaaac tctgctccta tggtgttaaa 1680 ttgtgacatg cttgagaaca agggaaagct cttcacctca aagtatataa ttatgacttc 1740 caactctgaa actccagtga aaccctcttc caagcgcgca ggtgcattct accgaagggt 1800 tactatcatc gatgtaacta acccttttgt ggagtcgcac aagcgtgcaa ggcctgggac 1860 gtctgttcct cgtagctgct ataagaaaaa cttctcccat ctctcacttg ctaaacgagg 1920 ggccgagtgc tggtgcaagg aatacgttct tgaccctaag gggcttcaac accaaagcat 1980 gaaggctccc cctcctacct ttcttaacat tgactcttta gctcagacga tgaagcaaga 2040 cttcttgctc aagaacatgg cttttgaggc tgaagatggg tgcgcagaac atcgatatgg 2100 gtttgtgtgt caacaggaag aggttgaaac tgttcgcagg ctcctcaacg cggttagggc 2160 aaggatgaat gctaccttca ctgtgtgtgt tggacccgag acctcgcact cgattggttg 2220 cactgcgcac gtgttaactc ccaatgagac ctttaatgga aagaagtttg ttgtgtcacg 2280 atgtaacgaa gcatcacttt ctgcccttga aggtaactgt gtaaagtcag ctttgggcgt 2340 gtgtatgtca gataaggatc tcactcattt atgccacttc attaaaggga aaattgtcaa 2400 tgacagtgtt aggttggatg aactacccgc caatcagcat gtggtaaccg ttaattcggt 2460 gtttgatttg gcctgggctg ttcgtcgtca tctcacactg gcagggcagt ttcaagctat 2520 cagagccgca tatgatgtgc ttactgtccc cgacaagatc cctgcaatgt tgcgtcactg 2580 gatggatgag acctcctttt ctgatgacca cgttgtaaca caatttgtaa cacctggtgg 2640 catagtcatc ctggagtctt gcggtggtgc acgcatctgg gctttaggtc gcaacgtgat 2700 ccgagcagga ggtgtcaccg caaccccaac cggaggatgt gttaggttaa tgggattatc 2760 tgcgccaacc atgccatggt ccgagatctt tcgtgagctc ttctctctct taggtagaat 2820 ttggtcatct gtcaaagtat cagccctagt actaactgct cttggaatgt acgcatctag 2880 atttagacca aaatcggaag caaaaggaaa aaccaaattg aagattggga catacagggg 2940 tcgcggtgta gcgctgactg atgacgagta cgatgagtgg cgcgaacaca acgcctccag 3000 aaaattggat ttgtcagtgg aggatttctt aatgttgcgc catcgtgccg ctctaggagc 3060 cgacgacaat gatgcagtaa aattccggtc gtggtggaac tccagaacca aaatggccaa 3120 tgattatgag gatgtcaccg taattggcaa aggtggcgtc aaacatgaaa agatcagaac 3180 caatacccta aaagctgtgg atcgtggtta tgacgtcagc tttgctgagg aatcaggacc 3240 aggcaccaag ttccacaaga atgcaattgg atctgtcaca gatgtttgtg gggagcacaa 3300 aggctattgc atccacatgg gccacggtgt ttacgcatcc gtagctcacg tggtgaaagg 3360 ggattcattt ttcttgggtg aaaggatttt tgatcttaag actaatggtg aattttgctg 3420 ctttcgcagc acgaaaattc tacctagtgc tgcacctttc ttttctggga agcccactcg 3480 tgatccgtgg ggatcccccg tggcaactga gtggaagcct aaaatgtaca caacaacctc 3540 tggaaagatt ctggggtgct ttgcaacaac ttcaactgaa actcacccgg gagactgtgg 3600 cctcccatat attgatgaca acgggagggt gaccggcctc cacactggct ctgggggacc 3660 caaaacccca agtgccaagt tggtggtgcc atatgtgcat attgacatga agactaaatc 3720 cgtcactgct caaaagtatg acgtaacaaa gcctgatata agttacaaag gcttaatttg 3780 taagcaattg gatgagatta ggattatacc aaaaggcaca cgtctccatg tctccccagc 3840 ccacactgag gattatcaag aatgctcaca ccaacccgca tcacttggaa gcggggatcc 3900 ccgctgtcca aaatctctca ctgctatagt tgttgattct ctaaaaccat actgtgagaa 3960 cgttgagggt cctccacatg atgttttgca cagagttcaa aagatgctta tcgaccacct 4020 ttcaggcttt gtccctatga acatttcctc ggaaacctct atgctctcag ctttccacaa 4080 actcaatcat gatacttcct gtggaccata cttgggtggc agaaagaaag atcacatggc 4140 taacggtgag ccggacaagc agttattgga tctcctgtct gcaaaatgga aattggcaac 4200 ccaaggcata gcactaccac atgagtacac aattgggcta aaggacgagt taaggcccgt 4260 ggagaaggtt agtgaaggga agagaaggat gatttggggt tgtgatgttg gcgtcgctac 4320 tgtctgtgca gctgcgttca agggtgttag cgatgccatc acagcaaacc accagtacgg 4380 gcctatacag gttggtatca acatggatag ccccagcgtc gaagcgctgt tccaaaggat 4440 caaaagcgcg gccaaggtat ttgcggtcga ttattccaaa tgggattcga cccaatcgcc 4500 tcgtgtcagt gcagcttcaa ttgacatcct tcgttacttt tccgatcgct ctccaattgt 4560 tgactcagcc tctaacacac tgaagagccc tcctgttgca atctttaatg gtgttgctgt 4620 aaaagtgtcc tctggcttac catctggaat gcctcttacc tcagtaatca attcccttaa 4680 tcattgtctg tatgttgggt gtgccattct tcaatcccta gaagctaagg ccattcccgt 4740 cacttggaac cttttctcaa cttttgatat catgacttac ggggatgatg gtgtctacat 4800 gtttcctatt atgtatgcaa gtattagtga ccaaattttt ggaaatcttt cttcctatgg 4860 cctgaaacca actcgggttg acaagtccgt tggagcaatt gagcctattg atcctgactc 4920 tgttgttttc ttgaagagaa caatcacaag gacacctcag gggataaggg gtttacttga 4980 tcgcagctct ataataagac aattctatta tattaaaggt gagaactccg atgactggaa 5040 gagcccccca aaacatattg acccaacatc tcgagggcaa cagctttgga atgcctgtct 5100 gtacgctagc caacatggct tggagttttt caacaaggtt tacaggctgg ccgagagggc 5160 tgttgaatat gaagagctgc actttgaacc cccaacatat gcttcggctt tggatcatta 5220 caacagccag ttcaatggcg tggaggcgcg gtctgaccag atcgactcga gtggcatgac 5280 cgccctacac tgtgatgtgt tcgaagtttg agcatgtgct caacctgcgc taacgtgctt 5340 aaatattatg attgggaccc ccatttcaaa ttggtaatca accccaacaa cttcctctct 5400 gttggctttt gtagtaaccc tttaatgtgt tgctacccag aactccttcc ggaatttgga 5460 actgtttggg attgcgatcg gtcaccactt gaaatttacc tagaatcaat acttggtgat 5520 gatgaatggg catccacttt tgacgctgtt gacccagtcg ttcccccaat gcactggggt 5580 gctgctggaa aaattttcca gccacacccc ggtgttctca tgcaccatct cattggtaag 5640 gttgctgcag gttgggaccc cgatctgcct ctaattcgac tcgaggcgga tgacgggtca 5700 atcacagcac ccgagcaagg aacaatggtt ggcggcgtca tcgctgaacc cagcgcccag 5760 atgtcaacag ctgctgatat ggccaccggg aaaagcgttg attctgagtg ggaggcattc 5820 ttctcctttc acaccagcgt caattggagt acatctgaaa cccaaggaaa gattctcttc 5880 aaacaatcct taggcccttt gctcaaccca tatctagaac accttgctaa gctatatgtt 5940 gcgtggtctg ggtcgattga ggttaggttc tctatctctg gctctggtgt ctttggtggg 6000 aagctcgcag ctattgttgt acctcctggg gttgatccag tgcagagtac ttcgatgcta 6060 caataccccc atgttttgtt tgatgctcgt caggtggaac cagttatctt ctgtcttcct 6120 gatctaagaa gcaccctgta ccaccttatg tctgacactg acactacatc cttggtcatt 6180 atggtgtaca atgatctcat caatccctat gccaatgatg ccaactcttc tgggtgtatt 6240 gtcactgtcg agacaaaacc tggccctgac ttcaagtttc acctccttaa gccacccgga 6300 tctatgctaa cccatggctc tatcccttct gatttaattc ccaaaacatc ttcgctctgg 6360 atcggtaacc gctactggtc agacataact gattttgtga ttcggccgtt tgtcttccaa 6420 gcaaatcgtc attttgactt taatcaagag accgcagggt ggagcacacc acggtttcgg 6480 cctatatctg ttaccattac tgaacagaac ggagcaaaat tgggcattgg ggtggcaaca 6540 gattacatag tgcctggaat ccctgatggc tggcctgaca ccacaattcc tggggagttg 6600 ataccagctg gtgattacgc aatcaccaat ggtactggca atgacatcac cacggctaca 6660 ggatatgaca ctgctgatat aattaagaac aataccaact ttaggggcat gtacatatgt 6720 ggttcgctcc agcgtgcctg gggtgataag aaaatttcca acactgcctt tatcaccact 6780 gccaccctag atggtgacaa caacaacaag atcaatccct gtaataccat agaccagtca 6840 aagatcgtcg tgtttcaaga caaccatgtt ggaaagaaag cgcaaacctc agacgataca 6900 ttggccctgc ttggttacac tggcattggt gagcaggcca tcgggtctga tagggaccgg 6960 gttgtgcgca tcagcactct ccctgaaact ggtgctcgag gcggtaacca cccaattttc 7020 tacaagaact ccattaaatt gggatatgta attaggtcta ttgatgtctt taattcacaa 7080 atcttgcaca cttccagaca gttatcgcta aatcattacc tactcccacc tgattctttt 7140 gccgtctata gaataattga ctcaaatggc tcgtggtttg atattggaat tgatagtgat 7200 gggttctctt ttgttggtgt ttctggcttt ggtaaattag aatttcccct ttctgcctcc 7260 tacatgggaa tacaattggc aaagatccgg cttgcctcta acattaggag tcccatgact 7320 aagttatgaa ttcaatatta ggcctgattg atactgttac taacactatt ggtaaagctc 7380 agcagattga attggacaaa gctgcacttg gtcaacagcg tgaattggct ctccagcgca 7440 ttggcttgga ccgccaagcc ttaaacaacc aagttgagca gtttaacaaa attcttgagc 7500 aaagggtaca aggcccaatc caatccgttc gccttgcgcg cgcggctgga tttagggttg 7560 acccttactc atacacaaac caaaactttt atgacgatca attaaatgca attagactat 7620 catataaaaa tttgtttaaa atttgatcat atatcccttt gggctgccgc acctgcgcct 7680 aaccccaggg 7690 //