ID M81861; SV 1; linear; genomic RNA; STD; VRL; 7835 BP. XX AC M81861; XX DT 28-JAN-1992 (Rel. 30, Created) DT 11-OCT-2021 (Rel. 144, Last updated, Version 6) XX DE Cardiovirus A1 strain Ruckert polyprotein gene, complete cds. XX KW . XX OS cardiovirus A1 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Cardiovirus. XX RN [1] RP 1-7835 RX PUBMED; 1310768. RA Duke G.M., Hoffman M.A., Palmenberg A.C.; RT "Sequence and structural elements that contribute to efficient RT encephalomyocarditis virus RNA translation"; RL J. Virol. 66(3):1602-1609(1992). XX DR MD5; a1f8449b985e3338b2c83defbd527384. DR CABRI; LMBP 3460. DR CABRI; LMBP 3472. DR CABRI; LMBP 3592. DR CABRI; LMBP 8200. DR EuropePMC; PMC110230; 9733894. DR EuropePMC; PMC111929; 10756027. DR EuropePMC; PMC114454; 11435606. DR EuropePMC; PMC114749; 11689644. DR EuropePMC; PMC115046; 11483747. DR EuropePMC; PMC187386; 12915530. DR EuropePMC; PMC1933019; 17460053. DR EuropePMC; PMC2168969; 17855533. DR EuropePMC; PMC2825307; 19728123. DR EuropePMC; PMC3061217; 21527980. DR EuropePMC; PMC3314439; 23024459. DR EuropePMC; PMC3768574; 24031451. DR EuropePMC; PMC3857217; 24349195. DR EuropePMC; PMC3911527; 24335301. DR EuropePMC; PMC4297377; 25547933. DR EuropePMC; PMC5112594; 27853294. DR EuropePMC; PMC5428449; 28348405. DR EuropePMC; PMC6326797; 30395302. DR RFAM; RF00210; IRES_Aptho. DR RFAM; RF00507; Corona_FSE. DR UniProtKB/Swiss-Prot; P0DJX6; ALT2B_EMCVR. XX CC Original source text: Encephalomyocarditis virus (strain Ruckert) CC cDNA to genomic RNA. XX FH Key Location/Qualifiers FH FT source 1..7835 FT /organism="cardiovirus A1" FT /strain="Ruckert" FT /mol_type="genomic RNA" FT /db_xref="taxon:2870365" FT CDS 834..7712 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q66765" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR015031" FT /db_xref="InterPro:IPR021573" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="InterPro:IPR037080" FT /db_xref="InterPro:IPR037243" FT /db_xref="UniProtKB/Swiss-Prot:Q66765" FT /protein_id="AAA43037.1" FT /translation="MATTMEQETCAHSLTFEECPKCSALQYRNGFYLLKYDEEWYPEEL FT LTDGEDDVFDPELDMEVVFELQGNSTSSDKNNSSSEGNEGVIINNFYSNQYQNSIDLSA FT NAAGSDPPRTYGQFSNLFSGAVNAFSNMLPLLADQNTEEMENLSDRVSQDTAGNTVTNT FT QSTVGRLVGYGTVHDGEHPASCADTASEKILAVERYYTFKVNDWTSTQKPFEYIRIPLP FT HVLSGEDGGVFGAALRRHYLVKTGWRVQVQCNASQFHAGGLLVFMAPEYPTLDAFAMDN FT RWSKDNLPNGTRTQTNKKGPFAMDHQNFWQWTLYPHQFLNLRTNTTVDLEVPYVNIAPT FT SSWTQHASWTLVIAVVAPLTYSTGASTSLDITASIQPVRPVFNGLRHETLSRQSPIPVT FT IREHAGTWYSTLPDSTVPIYGKTPVAPSNYMVGEYKDFLEIAQIPTFIGNKIPNAVPYI FT EASNTAVKTQPLATYQVTLSCSCLANTFLAALSRNFAQYRGSLVYTFVFTGTAMMKGKF FT LIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRMVGTDQVNITNA FT DGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSPQGVENAEKGVTE FT NTNATADFVAQPVYLPENQTKVAFFYNRSSPIGAFTVKSGSLESGFAPFSNGTCPNSVI FT LTPGPQFDPAYDQLRPQRLTEIWGNGNEETSKVFPLKSKQDYSFCLFSPFVYYKCDLEV FT TLSPHTSGNHGLLVRWCPTGTPTKPTTQVLHEVSSLSEGRTPQVYSAGPGISNQISFVV FT PYNSPLSVLSAVWYNGHKRFDNTGSLGIAPNSDFGTLFFAGTKPDIKFTVYLRYKNKRV FT FCPRPTVFFPWPTSGDKIDMTPRAGVLMLESPNALDISRTYPTLHVLIQFNHRGLEVRL FT FRHGHFWAETRADVILRSKTKQVSFLSNGNYPSMDSRAPWNPWKNTYQAVLRAEPCRVT FT MDIYYKRVRPFRLPLVQKEWPVREENVFGLYRIFNAHYAGYFADLLIHDIETNPGPFMF FT RPRKQVFQTQGAAVSSMAQTLLPNDLASKAMGSAFTALLDANEDAQKAMKIIKTLSSLS FT DAWENVKETLNNPEFWKQLLSRCVQLIAGMTIAVMHPDPLTLLCLGTLTAAEITSQTSL FT CEEIAAKFKTIFITPPPRFPTISLFQQQSPLKQVNDIFSLAKNLDWAVKTVEKVVDWFG FT TWIVQEEKEQTLDQLLQRFPEHAKRISDLRNGMAAYVECKESFDFFEKLYNQAVKEKRT FT GIAAVCEKFRQKHDHATARCEPVVIVLRGDAGQGKSLSSQVIAQAVSKTIFGRQSVYSL FT PPDSDFFDGYENQFAAIMDDLGQNPDGSDFTTFCQMVSTTNFLPNMASLERKGTPFTSQ FT LVVATTNLPEFRPVTIAHYPAVERRITFDYSVSAGPVCSKTEAGYKVLDVERAFRPTGE FT APLPCFQNNCLFLEKAGLQFRDNRTKEIISLVDVIERAVARIERKKKVLTTVQTLVAQG FT PVDEVSFHSVVQQLKARQQATDEQLEELQEAFAKVQERNSVFSDWLKISAMLCAATLAL FT SQVVKMAKAVKQMVKPDLVRVQLDEQEQGPYNETARVKPKTLQLLDIQGPNPVMDFEKY FT VAKHVTAPIGFVYPTGVSTQTCLLVRGRTLVVNRHMAESDWTSIVVRGVTHARSTVKIL FT AIAKAGKETDVSFIRLSSGPLFRDNTSKFVKAGDVLPTGAAPVTGIMNTDIPMMYTGTF FT LKAGVSVPVETGQTFNHCIHYKANTRKGWCGSALLADLGGSKKILGIHSAGSMGIAAAS FT IVSQEMIRAVVNAFEPQGALERLPDGPRIHVPRKTALRPTVARQVFQPAYAPAVLSKFD FT PRTEADVDEVAFSKHTSNQESLPPVFRMVAKEYANRVFTLLGKDNGRLTVKQALEGLEG FT MDPMDRNTSPGLPYTALGMRRTDVVDWESATLIPFAAERLRKMNEGDFSEVVYQTFLKD FT ELRPIEKVQAAKTRIVDVPPFEHCILGRQLLGKFASKFQTQPGLELGSAIGCDPDVHWT FT AFGVAMQGFERVYDVDYSNFDSTHSVAMFRLLAEEFFTPENGFDPLTREYLESLAISTH FT AFEEKRFLITGGLPSGCAATSMLNTIMNNIIIRAGLYLTYKNFEFDDVKVLSYGDDLLV FT ATNYQLDFDKVRASLAKTGYKITPANTTSTFPLNSTLEDVVFLKRKFKKEGPLYRPVMN FT REALEAMLSYYRPGTLSEKLTSITMLAVHSGKQEYDRLFAPFREVGVVVPSFESVEYRW FT RSLFW" FT mat_peptide 1035..1244 FT /product="protein 1A" FT mat_peptide 1245..2012 FT /product="protein 1B" FT mat_peptide 2013..2705 FT /product="protein 1C" FT mat_peptide 2706..3536 FT /product="protein 1D" FT mat_peptide 3537..3965 FT /product="protein 2A" FT mat_peptide 3966..4415 FT /product="protein 2B" FT mat_peptide 4416..5390 FT /product="protein 2C" FT mat_peptide 5391..5714 FT /product="protein 3AB" FT mat_peptide 5715..6329 FT /product="protein 3C" FT mat_peptide 6330..7709 FT /product="protein 3D" XX SQ Sequence 7835 BP; 2013 A; 2030 C; 1846 G; 1946 T; 0 other; ttgaaagccg ggggtgggag atccggattg ccagtctgct cgatatcgca ggctgggtcc 60 gtgactaccc actccccctt tcaacgtgaa ggctacgata gtgccagggc gggtactgcc 120 gtaagtgcca ccccaaaata acaacagacc cccccccccc cccccccccc cccccccccc 180 cccccccccc cccccccccc cccccccccc cccccccccc cccccccccc cccccccccc 240 cccccccccc cccccccccc ccctctccct cccccccccc taacgttact ggccgaagcc 300 gcttggaata aggccggtgt gcgtttgtct atatgttatt ttccaccata ttgccgtctt 360 ttggcaatgt gagggcccgg aaacctggcc ctgtcttctt gacgagcatt cctaggggtc 420 tttcccctct cgccaaagga atgcaaggtc tgttgaatgt cgtgaaggaa gcagttcctc 480 tggaagcttc ttgaagacaa acaacgtctg tagcgaccct ttgcaggcag cggaaccccc 540 cacctggcga caggtgcctc tgcggccaaa agccacgtgt ataagataca cctgcaaagg 600 cggcacaacc ccagtgccac gttgtgagtt ggatagttgt ggaaagagtc aaatggctct 660 cctcaagcgt attcaacaag gggctgaagg atgcccagaa ggtaccccat tgtatgggat 720 ctgatctggg gcctcggtgc acatgcttta catgtgttta gtcgaggtta aaaaacgtct 780 aggccccccg aaccacgggg acgtggtttt cctttgaaaa acacgatgat aatatggcca 840 caaccatgga acaagagact tgcgcgcact ctctcacttt tgaggaatgc ccaaaatgct 900 ctgctctaca ataccgtaat ggattttacc tgctaaagta tgatgaagaa tggtacccag 960 aggagttatt gactgatgga gaggatgatg tctttgatcc cgaattagac atggaagtcg 1020 ttttcgagtt acagggcaat tccacctcct cagacaagaa taactcctcc tcggaaggca 1080 atgaaggtgt gatcatcaat aacttttact ccaaccaata tcaaaactcc attgacctct 1140 ctgctaatgc agccgggtct gacccaccca gaacctacgg tcaattttcg aatctctttt 1200 cgggcgcagt gaatgccttt tctaatatgc ttccattgct agctgatcaa aatacagaag 1260 aaatggagaa tctgtctgat cgagtgtctc aagacactgc cggcaatacg gtcacaaaca 1320 cccagtcaac agtgggccgt cttgtcggtt atggtaccgt tcatgatgga gagcatccgg 1380 catcatgtgc tgacactgct tcagaaaaga tcctggcggt ggaaaggtac tacaccttca 1440 aggttaatga ttggacatca acacaaaagc cctttgagta catccgcatt ccccttcctc 1500 acgtcctgtc cggtgaagat ggtggtgtct ttggtgcggc cctccgccgg cactacctgg 1560 tgaaaactgg atggcgggtg caagttcagt gcaacgcctc tcaattccac gctggaggtt 1620 tgctggtgtt catggcacca gagtatccaa ccttagatgc ttttgccatg gacaaccgtt 1680 ggtccaagga taacctgcct aatggaacca gaactcagac aaacaaaaag ggaccatttg 1740 ccatggacca tcagaacttc tggcagtgga ccttgtatcc ccatcaattc ctgaatctga 1800 gaactaacac cacagtggat cttgaggtgc catatgtaaa catagccccc acttcctcct 1860 ggacacaaca tgcttcctgg actttggtga ttgcagtggt tgctcccctg acatactcaa 1920 ccggggcttc taccagtttg gatatcaccg cttctattca gccagtaagg cctgtcttta 1980 atggcctccg gcatgagaca ctttctagac agtcgcccat tccggtcaca attagagaac 2040 atgctggtac ctggtattct actctgccag acagcacagt gcctatttat ggcaagactc 2100 ctgttgctcc atccaattac atggtaggcg aatacaagga cttcctggag atagctcaga 2160 ttccaacctt tattgggaat aagatcccta atgctgtccc ctacattgag gcatccaaca 2220 cagccgtcaa gacccaaccg ctggccacct atcaagtgac cttgtcctgc tcctgtctgg 2280 ccaatacatt cttggccgct ttgtctagaa actttgctca gtaccgggga tcattggttt 2340 atacctttgt gttcactggg accgcgatga tgaagggcaa gttcctcatt gcctacaccc 2400 cacctggagc gggcaagccc actagtcgag accaagccat gcaggcgact tatgcgattt 2460 gggatttggg gctaaattct tcttactcct tcactgtgcc ttttatttct cccactcact 2520 tccgcatggt aggtactgac caagtcaaca tcactaatgc ggatggctgg gttaccgtgt 2580 ggcagctcac tcccctcact tacccaccag gatgcccgac ctctgctaag atactaacaa 2640 tggtgagcgc agggaaggat ttctcactca agatgcctat ctcacctgcc ccctggagcc 2700 ctcagggagt agaaaacgct gaaaaagggg tcactgaaaa cacaaacgca actgctgact 2760 ttgtggctca accagtttac ttgcctgaga accaaacgaa ggtggctttc ttctataata 2820 ggtccagtcc cattggtgcc ttcaccgtga agtccggcag tctagaatct ggttttgccc 2880 cgttctctaa tgggacttgc ccgaactcag tgatactgac ccctgggccc caatttgacc 2940 ccgcctatga ccaactcagg ccacagcgtc tgacagaaat ttggggcaat ggaaatgagg 3000 agacctcaaa agtctttccg cttaaatcca aacaggatta ttccttctgc ctcttctccc 3060 cctttgtgta ttataaatgt gatttagaag tgactcttag tcctcacact tcaggcaacc 3120 atgggctgtt ggtgaggtgg tgtcccactg gtacaccaac caagcccact acccaggttc 3180 tccatgaagt aagttccctc tcagaaggca gaacccccca ggtttatagt gccggacctg 3240 gcatttcaaa tcagatttcc tttgtagttc cttacaattc tccactttca gtcctatcag 3300 ctgtctggta taatggacac aagagatttg acaacactgg gagcttgggc attgccccta 3360 attctgattt cggcactctg ttctttgctg gcacaaagcc tgacattaaa ttcacagtct 3420 acttgagata caagaataag agagtttttt gcccacgtcc gactgtcttt ttcccctggc 3480 ccacttccgg agacaagatt gatatgaccc cgagagctgg agtcttgatg ctagagagtc 3540 caaatgccct agacatttca agaacatacc ccacgttaca tgttctcatt caattcaacc 3600 atagaggttt ggaggttaga ttgtttagac atggacactt ttgggctgaa acacgtgcgg 3660 acgtgattct gagatcaaag accaaacagg tctctttcct gagcaacggg aactacccgt 3720 caatggactc tagagctccc tggaatcctt ggaagaatac ctaccaggcg gttctaagag 3780 cagaaccatg tagagtgacc atggatatat attataagag agtcaggcct tttagactgc 3840 ccctggttca gaaggaatgg cccgtgcgag aggagaacgt tttcggtttg taccggatct 3900 tcaatgccca ctacgctggt tactttgcgg acctactgat tcatgacatt gagacaaatc 3960 cagggccctt catgtttaga ccaaggaaac aggttttcca gacccaagga gcggcagtgt 4020 catcaatggc tcaaacccta ctgccgaacg accttgccag caaagctatg ggatcagctt 4080 ttacggcttt gctcgatgcc aacgaggacg cccaaaaagc aatgaagatt ataaagacat 4140 taagttctct atcggatgca tgggaaaatg taaaagaaac actaaacaac ccagagttct 4200 ggaagcagct cttgagcaga tgtgtgcagc tgattgcagg gatgacaata gcagtgatgc 4260 atccggaccc tttgactctg ctctgcttag gaacattgac ggccgccgag attacaagcc 4320 agacaagtct gtgcgaagaa atagcagcta agttcaagac aattttcatc actcctccac 4380 cacggtttcc cacaatctct cttttccaac aacaatcccc cttgaaacag gtaaatgata 4440 ttttctccct agccaagaac ctggactggg ccgtcaagac tgtggaaaag gtggttgatt 4500 ggtttgggac atggatagta caggaggaaa aggaacagac cctagatcag ctcttgcagc 4560 gtttccccga acatgcgaag cgcatttctg atctccggaa tggaatggcc gcctatgtag 4620 agtgcaagga gagttttgat ttctttgaaa agctgtacaa tcaggcagtg aaagagaaga 4680 gaacgggtat cgccgccgtc tgtgaaaaat tcagacagaa gcatgaccac gccaccgctc 4740 ggtgtgagcc agtcgtgatt gtgctccgcg gagacgcggg gcaagggaaa tctttatcaa 4800 gtcaggttat tgcccaggcc gtctccaaga ccattttcgg ccggcaatct gtgtattccc 4860 ttccccccga ttcggatttc tttgatggct atgaaaatca gtttgcagca ataatggatg 4920 atctagggca aaatcctgat ggctctgatt tcactacgtt ctgtcagatg gtttcgacta 4980 ccaattttct ccccaatatg gctagtctag agagaaaggg cacccccttt acatctcagc 5040 ttgtggtggc aactaccaat ctgcctgagt ttagacctgt cacaatagcc cattaccctg 5100 ctgttgagag aaggataact ttcgactatt cagtgtctgc tggtccagtc tgctccaaaa 5160 cagaggccgg gtataaggtt ttggatgttg aaagagcctt taggcctacc ggtgaggctc 5220 ctcttccatg cttccagaat aactgccttt tccttgagaa agctgggctc cagttcagag 5280 ataaccgaac taaagagatc atttccctgg tagatgtgat tgagagagcc gtggctagga 5340 ttgaaaggaa gaagaaagtt ctcacaaccg tgcagaccct tgtggcacaa ggtccagtag 5400 acgaggtcag tttccattcc gtagtccagc agcttaaagc aagacagcaa gcgacagatg 5460 aacagcttga ggaattgcaa gaggctttcg cgaaagtaca ggagcgtaac tctgtgtttt 5520 ctgattggtt gaagatttct gcaatgttgt gtgctgcgac tctggcactt tcccaagttg 5580 tcaagatggc caaggcggtg aagcagatgg tcaagcctga tctggttcgt gtgcaattgg 5640 atgagcagga gcagggacct tacaatgaga cagcgagagt taaaccaaaa acactgcagt 5700 tgttggacat tcagggacca aaccctgtga tggactttga aaaatatgta gccaaacatg 5760 taaccgcccc cattggtttt gtctacccca ctggggtgag cacccagact tgcctccttg 5820 tgagaggccg caccttggta gtaaatagac acatggccga gtctgactgg acttccatag 5880 tagtgcgtgg agtcacacac gcccgctcta ctgttaaaat tttggccata gctaaagcag 5940 gcaaagagac tgacgtatct ttcatccgcc tctcttctgg tcctctattc agagacaata 6000 catccaaatt tgtcaaggct ggtgatgtac ttcctactgg tgccgctcca gtcacgggga 6060 taatgaacac ggacataccc atgatgtaca caggaacctt cctgaaagct ggtgtgtcag 6120 tcccagtgga aaccggccag acctttaatc actgtattca ttacaaggct aacacacgaa 6180 agggctggtg tggatcagcc ctactggcag atcttggagg aagcaagaaa atccttggca 6240 tccattctgc tggctctatg ggaatagccg ccgcctcgat tgtgtcacag gagatgattc 6300 gggcggtagt gaatgccttt gagccacagg gtgctctcga gagattgcca gatgggcccc 6360 gtattcacgt accacgtaaa acagcactac gccccaccgt tgcccgtcaa gtcttccaac 6420 cagcatatgc cccggctgtt ctatcgaaat ttgaccctag aacagaggct gatgtagatg 6480 aagtggcttt ctccaaacat acctccaacc aggaaagcct cccaccagtg tttagaatgg 6540 tagccaaaga gtatgccaat agagttttca ccttgctggg aaaagacaat ggccgtctga 6600 ctgtaaagca ggctttggaa ggactggagg ggatggaccc catggacagg aacacctccc 6660 cggggcttcc atatactgcg ctaggaatgc gcagaacaga tgtcgtagat tgggaatcag 6720 ccaccctgat cccgtttgcg gcagaaagat taagaaaaat gaatgaagga gacttttccg 6780 aagttgtcta tcaaacattc ctcaaggatg agcttagacc gatagagaag gttcaagccg 6840 ccaagacacg gattgtagat gttccaccat ttgagcattg cattctgggt agacaattgt 6900 tgggaaagtt tgcatcaaag ttccagaccc aaccgggtct ggaactagga tcagccattg 6960 gatgtgaccc agatgtacac tggactgcct tcggtgtcgc catgcaaggt tttgagcgtg 7020 tctacgatgt ggactactcc aactttgatt cgacccattc ggtggcaatg ttccgcttat 7080 tggctgagga atttttcact ccagagaatg gttttgaccc cctgactaga gaatatcttg 7140 agtcattagc catttcaacc catgcgtttg aggagaagcg ctttctgata accggtggtc 7200 tcccatcagg ttgtgcagcg acctcaatgc taaacactat aatgaataat ataataatta 7260 gggcgggttt gtatctcacg tataaaaatt ttgaatttga tgatgtgaag gtgttgtcgt 7320 acggagatga tctccttgtg gccacaaatt accaattgga ttttgataag gtgagagcaa 7380 gcctcgcaaa gacaggatat aagataactc ccgctaacac aacttctacc tttcctctta 7440 attcgacgct tgaagacgtt gtcttcttaa aaagaaagtt taagaaagag ggccctctgt 7500 atcggcctgt catgaacaga gaggcgttgg aagcaatgtt gtcatactat cgtccaggga 7560 ctctatctga gaaactcact tcgatcacta tgcttgccgt tcattctggc aagcaggaat 7620 atgatcggct ctttgcccca ttccgtgagg taggggttgt cgtgccatca ttcgagagtg 7680 tggagtacag atggaggagt ctgttctggt agtagtgtag tcactggcac aacgcgttac 7740 ccggtaagcc aatcgggtat acacggtcgt catactgcag acagggttct tctactttgc 7800 aagatagtct agagtagtaa aataaataga tagag 7835 //