ID M81103; SV 1; linear; genomic DNA; STD; VRL; 2580 BP. XX AC M81103; XX DT 09-MAY-1992 (Rel. 31, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 6) XX DE Tobacco yellow dwarf virus gene, complete cds. XX KW coat protein; polymerase. XX OS Tobacco yellow dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2580 RX DOI; 10.1016/0042-6822(92)90466-3. RX PUBMED; 1546458. RA Morris B.A.M., Richardson K.A., Haley A., Zhan X., Thomas J.E.; RT "The nucleotide sequence of the infectious cloned DNA component of tobacco RT yellow dwarf virus reveals features of geminiviruses infecting RT monocotyledonous plants"; RL Virology 187(2):633-642(1992). XX DR MD5; 0b1a90a269a98e28b46c42c479007966. XX FH Key Location/Qualifiers FH FT source 1..2580 FT /organism="Tobacco yellow dwarf virus" FT /mol_type="genomic DNA" FT /cell_line="tobacco" FT /db_xref="taxon:10830" FT misc_feature 1..268 FT /note="large intergenic region" FT stem_loop 121..151 FT regulatory 235..241 FT /regulatory_class="TATA_box" FT CDS 269..577 FT /codon_start=1 FT /gene="V1" FT /db_xref="GOA:P31619" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/Swiss-Prot:P31619" FT /protein_id="AAA47947.1" FT /translation="MYPAKYQVVPSGINYSDTPVGTFEQYQPQKAGESSEHFFSKVVVA FT LIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPGEGNPNGGPV" FT CDS 561..1325 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /db_xref="GOA:P31616" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/Swiss-Prot:P31616" FT /protein_id="AAA47948.1" FT /translation="MAGRYKGLVYSRKRGRYGKTYQALGVKSQRELEQLVNQPGRPVSN FT RRPALQVAEYLWTTNKTGMTFSPGGSTFLITNFPQGANENCRHTNRTITYKMAVKTWVA FT LDGSMFSRVSKFPIYFWLVYDKNPGESNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVK FT KTWSCMLESNGVDPNAKQGSSYYGPGPCYQWRHVTKFFKRLGVSTEWKNSSTGDVADIK FT EGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ" FT regulatory 1321..1326 FT /regulatory_class="polyA_signal_sequence" FT misc_feature 1323..1483 FT /note="small intergenic region" FT primer_bind complement(1355..1431) FT regulatory 1387..1392 FT /regulatory_class="polyA_signal_sequence" FT CDS complement(join(1481..1894,1981..2580)) FT /codon_start=1 FT /gene="C2" FT /product="polymerase" FT /db_xref="GOA:P31618" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P31618" FT /protein_id="AAA47949.1" FT /translation="MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI FT FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK FT DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS FT ANKLFPPQPEIYQATFTEEDLQCHEDLQLWRDQHLYHEPRRAGTRIPSLYICGPSRTGK FT TTWARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYG FT KKKKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMYAAETFFAPESSSH" FT exon complement(<1484..1894) FT /gene="C2" FT /number=2 FT CDS complement(1693..2580) FT /codon_start=1 FT /gene="C1" FT /db_xref="GOA:P31617" FT /db_xref="GOA:P31618" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P31617" FT /db_xref="UniProtKB/Swiss-Prot:P31618" FT /protein_id="AAA47950.1" FT /translation="MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI FT FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK FT DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS FT ANKLFPPQPEIYQATFTEEDLQCHEDLQLWRDQHLYHVSVDAYRLVHNVTLVEAHSDLV FT WMDDISRNLEGLEPGSPPSTSADQVVPERQHGPEASEGTITGMGPSTSLSMMTTRPTTS FT STTSPSNSSHSGSN" FT intron complement(1895..1980) FT /gene="C1" FT /number=1 FT exon complement(1981..>2580) FT /gene="C1" FT /number=1 XX SQ Sequence 2580 BP; 685 A; 497 C; 623 G; 775 T; 0 other; attaaggctc aagtaccgta cgatgaaact ctattcttaa ctagtgagtg agccagtgag 60 ccaggtttat gtggcattta tattggtagg tggaccgtta ggatcttgac gcgtggggca 120 cactcacgga ttttaatatt acccgtgagt gctctcttgg ccccacgcga gccctttagg 180 gcgagcgaaa gtgcgccgta gtttccttta gtggttcatg agtcattata gtgctatata 240 aagatgatgt gacatcccaa agttgaaaat gtatcccgcc aaataccaag tggtcccatc 300 tggtataaat tactcagata cccctgttgg tacttttgag caatatcagc cgcagaaagc 360 gggtgagtca tcggagcact tcttttcgaa agttgttgtt gctttgattg ttatcctttt 420 tgctgtaggt atcgtatact tagcgtatac gttattcttg aaggatttga tccttctttt 480 gaaagcaaag aagcagaaga cgacaactga gatagggttt ggtaataccc ctctcagaag 540 acctggtgaa ggaaacccta atggcgggcc ggtataaggg tttggtttat tcccggaaaa 600 ggggacgtta tggcaagacc tatcaggctc ttggcgtgaa atcacaaaga gaattggagc 660 agctagttaa ccaaccaggc cgtcctgttt ctaacaggcg tcctgctcta caggtcgcag 720 agtatctgtg gacgacgaat aaaacaggaa tgacgttttc tcctggtggg tctactttcc 780 tcatcactaa tttccctcaa ggggcgaacg agaactgtag gcacaccaac cggacaatta 840 cctacaagat ggctgtgaag acgtgggttg ctttggatgg ctcgatgttc tctagggttt 900 caaaattccc aatctatttc tggttggtgt atgataaaaa ccctggcgag agtaatccat 960 cgccttccgc tatttttgat agtctatatc aagatcagcc tgggacttgg actgtgactc 1020 gtaatgtatg tcacaggttt gtcgttaaaa aaacctggtc atgtatgttg gagtctaatg 1080 gagttgaccc taatgctaaa caagggtctt cttactatgg tcctgggcct tgttatcagt 1140 ggaggcatgt tactaagttt tttaaacgtt taggggttag cacagagtgg aagaattctt 1200 ccactggtga tgttgctgat attaaggaag gagcactata ccttgtatgt gctcctggtg 1260 gtggtgctac tgtaagagtt ggcggtagat tccgcatgta tttcaaatca gttggcaatc 1320 aataaaaatg tcgttatttt gatttcatat taatgagctt cagtgtagag aaattcaaat 1380 cttattaata aaaacccgga atacaaaaac acacgaaaac gaaaaaaaga caccttacaa 1440 tcattacaca ctatataccc tcctatgagg agaggcacgt tcagtgactc gacgattcag 1500 gagcaaaaaa tgtttccgcc gcatacataa aatgcgtaat acaattggct tcaaagtatt 1560 caatctgagc gggagacata ttcttcagcc agtcttcatc gtcgttacat agtataatac 1620 atggcactcc tccctttatt ttcttctttt ttccatactt agggttgaca gtaaaatcag 1680 actggcaacc tattaattgc ttccagagtg ggacgaattt gaaggggatg tcgtcgatga 1740 cgttgtaggt cgcgtggtca tcatagacag tgaagtcgat ggtcccattc cagtaattgt 1800 gccttccgag gcttctggcc catgttgtct ttccggtacg acttggtccg cagatgtaga 1860 gggaggggat cctggttcca gcccttctag gttcctggat atgtcgtcca tccaaactaa 1920 gtcagagtgt gcttcaacaa gtgtgacgtt atgaactaga cggtaagcat ctacacttac 1980 gtggtataga tgctggtctc tccataactg cagatcttca tgacattgga gatcttcctc 2040 agtgaatgtg gcctggtaga tttcaggttg tggtggaaat agtttatttg cagagtattc 2100 caaccactgt aattttgttg cccattcatg aggaaattca tcctttatca tgtccagata 2160 ttcctcttta gaagtcgcag tctggataat agttcgccat cgctcatcag atttggaagg 2220 ggagactctg tgtttcttga actctccttt ggtgatgacg tttccgtctt tggagatgta 2280 ttcaagaact tgttcagagt ttttagctgg ttggatattt ggatggtttc cttcaagatc 2340 aaaaaaagaa gggtcacgta tattgcttct tttgtcaagc tgtataaggc agtgaagatg 2400 gggagtacca tcctggtgga gttcagtagc aatagcgata aagaaaatag caaaacgtga 2460 aagtttatcc cagaggaaat ctctgagatt ttctgcacta gagctgcagc gtggataagt 2520 aaggaagaca tatttggttt ggagtctgaa ggatttggtt ttctgggggg ctgaaggcat 2580 //