ID M67473; SV 1; linear; genomic RNA; STD; VRL; 7437 BP. XX AC M67473; XX DT 06-DEC-1991 (Rel. 30, Created) DT 09-APR-2005 (Rel. 83, Last updated, Version 7) XX DE Rabbit hemorrhagic disease virus-FRG, complete genome. XX KW . XX OS Rabbit hemorrhagic disease virus-FRG OC Viruses; Riboviria; Caliciviridae; Lagovirus. XX RN [1] RP 1-7437 RX DOI; 10.1016/0042-6822(91)90436-F. RX PUBMED; 1840711. RA Meyers G., Wirblich C., Thiel H.J.; RT "Rabbit hemorrhagic disease virus--molecular cloning and nucleotide RT sequencing of a calicivirus genome"; RL Virology 184(2):664-676(1991). XX DR MD5; a53d8bb70b1435b11030478ebfdb722f. DR EuropePMC; PMC103897; 9847396. DR EuropePMC; PMC112747; 10400760. DR EuropePMC; PMC113000; 10516074. DR EuropePMC; PMC114027; 11152494. DR EuropePMC; PMC120604; 12089292. DR EuropePMC; PMC1317165; 16333083. DR EuropePMC; PMC136307; 12072506. DR EuropePMC; PMC136553; 12239283. DR EuropePMC; PMC1472167; 16698991. DR EuropePMC; PMC2395209; 18385231. DR EuropePMC; PMC2795755; 19961620. DR EuropePMC; PMC2976393; 20861266. DR EuropePMC; PMC3528410; 23072668. DR EuropePMC; PMC3557890; 23171812. DR EuropePMC; PMC3620445; 23436187. DR EuropePMC; PMC3837648; 24206671. DR EuropePMC; PMC4113788; 25025834. DR EuropePMC; PMC4143647; 24662519. DR EuropePMC; PMC416503; 15163740. DR EuropePMC; PMC4189657; 25248407. DR EuropePMC; PMC4542356; 26157125. DR EuropePMC; PMC5044836; 27512059. DR EuropePMC; PMC5602050; 28702932. DR EuropePMC; PMC5697611; 27615998. DR EuropePMC; PMC5749467; 29260677. DR EuropePMC; PMC5752944; 29093089. DR EuropePMC; PMC5866260; 29508188. DR EuropePMC; PMC88960; 11148001. XX FH Key Location/Qualifiers FH FT source 1..7437 FT /organism="Rabbit hemorrhagic disease virus-FRG" FT /mol_type="genomic RNA" FT /db_xref="taxon:314536" FT CDS 10..7044 FT /codon_start=1 FT /product="potential RNA-dependent RNA polymerase" FT /note="putative" FT /db_xref="GOA:P27410" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="PDB:1KHV" FT /db_xref="PDB:1KHW" FT /db_xref="UniProtKB/Swiss-Prot:P27410" FT /protein_id="AAA47285.1" FT /translation="MAAMSRLTGMTTAILPEKKPLDFFLDLRDKTPPCCIRATGRLAWP FT VFPGQNGKEGPLETCNKCGKWLNGFGNFGLEDLGDVCLCSIAQQKHKFGPVCLCNRVYI FT HDCGRWRRRSRFLKHYKALNKVIPCAYQFDESFPTPIFEGEVDDLFVELGAPTSMGFMD FT KKLLKKGKKLMDKFVDVDEPCLTSRDTSLLDSIASDNTIRAKLEEEYGVEMVQAARDRK FT DFMKNLRLALDNRPANPVTWYTKLGNITEKGKQWAKKVVYGARKVTDPLKTLASILLVG FT LHNVIAVDTTVMLSTFKPVNLLAILMDWNNDLTGFITTLVRLLELYGVVQATVNLIIEG FT VKSFWDKVVCATDRCFDLLKRLFDTFEDSVPTGPTAGCLIFMAFVFSTVVGYLPNNSVI FT TTFMKGAGKLTTFAGVVGAIRTLWITINQHMVAKDLTSVQQKVMTVVKMANEAATLDQL FT EIVSCLCSDLETTLTNRCTLPSYNQHLGILNASQKVISDLHTMVLGKINMTKQRPQPVA FT VIFKGAPGIGKTYLVHRIARDLGCQHPSTINFGLDHFDSYTGEEVAIADEFNTCGDGES FT WVELFIQMVNTNPCPLNCDKAENKNKVFNSKYLLCTTNSNMILNATHPRAGAFYRRVMI FT VEARNKAVESWQATRHGSKPGKSCYSKDMSHLTFQVYPHNMPAPGFVFVGDKLVKSQVT FT PREYKYSELLDLIKSEHPDVASFEGANKFNFVYPDAQYDQALLMWKQYFVMYGCVARLA FT KNFVDDIPYNQVHISRASDPKIEGCVEYQCKFQHLWRMVPQFVLGCVNMTNQLGTPLTQ FT QQLDRITNGVEGVTVTTVNNILPFHSQTTLINPSFIKLIWAVRKHLKGLSGVTKVAQFI FT WRVMTNPVDAYGTLVRTLTGAATFSDDPVSTTIICSNCTIQLHSCGGLLVRYSRDPVPV FT ASDNVDRGDQGVDVFTDPNLISGFSWRQIAHLFVEVISHLCANHLVNLATMAALGAVAT FT KAFQGVKGKTKRGRGARVNLGNDEYDEWQAARREFVNAHDMTAEEYLAMKNKAAMGSDD FT QDSIMFRSWWTRRQLRPEEDQVTIVGRSGVRNEVIRTRVRQTPRGPKTLDDGGFYDNDY FT EGLPGFMRHNGSGWMIHIGNGLYISNTHTARSSCSEIVTCSPTTDLCLVKGESIRSVAQ FT IAEGTPVCDWKKSPISTYGIKKTLSDSTKIDVLAYDGCTQTTHGDCGLPLYDSSGKIVA FT IHTGKLLGFSKMCTLIDLTITKGVYETSNFFCGEPIDYRGITAHRLVGAEPRPPVSGTR FT YAKVPGVPDEYKTGYRPANLGRSDPDSDKSLMNIAVKNLQVYQQEPKLDKVDEFIERAA FT ADVLGYLRFLTKGERQANLNFKAAFNTLDLSTSCGPFVPGKKIDHVKDGVMDQVLAKHL FT YKCWSVANSGKALHHIYACGLKDELRPLDKVKEGKKRLLWGCDVGVAVCAAAVFHNICY FT KLKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCLDYSKWDSTMSPCVVRLAIDI FT LADCCEQTELTKSVVLTLKSHPMTILDAMIVQTKRGLPSGMPFTSVINSICHWLLWSAA FT VYKSCAEIGLHCSNLYEDAPFYTYGDDGVYAMTPMMVSLLPAIIENLRDYGLSPTAADK FT TEFIDVCPLNKISFLKRTFELTDIGWVSKLDKSSILRQLEWSKTTSRHMVIEETYDLAK FT EERGVQLEELQVAAAAHGQEFFNFVCRELERQQAYTQFSVYSYDAARKILADRKRVVSV FT VPDDEFVNVMEGKARAAPQGEAAGTATTASVPGTTTDGMDPGVVATTSVITAENSSASI FT ATAGIGGPPQQVDQQETWRTNFYYNDVFTWSVADAPGSILYTVQHSPQNNPFTAVLSQM FT YAGWAGGMQFRFIVAGSGVFGGRLVRAVIPPGIEIGPGLEVRQFPHVVIDARSLEPVTI FT TMPDLRPNMYHPTGDPGLVPTLVLSVYNNLINPFGGSTSAIQVTVETRPSEDFEFVMIR FT APSSKTVDSISPAGLLTTPVLTGVGNDNRWNGQIVGLQPVPGGFSTCNRHWNLNGSTYG FT WSSPRFGDIDHRRGSASYSGSNATNVLQFWYANAGSAIDNPISQVAPDGFPDMSFVPFN FT GPGIPAAGWVGFGAIWNSNSGAPNVTTVQAYELGFATGAPGNLQPTTNTSGAQTVAKSI FT YAVVTGTAQNPAGLFVMASGIISTPNASAITYTPQPDRIVTTPGTPAAAPVGKNTPIMF FT ASVVRRTGDVNATAGSANGTQYGTGSQPLPVTIGLSLNNYSSALMPGQFFVWQLTFASG FT FMEIGLSVDGYFYAGTGASTTLIDLTELIDVRPVGPRPSKSTLVFNLGGTANGFSYV" FT CDS 7025..7378 FT /codon_start=1 FT /product="potential capsid protein" FT /note="putative" FT /db_xref="GOA:P27412" FT /db_xref="InterPro:IPR008558" FT /db_xref="UniProtKB/Swiss-Prot:P27412" FT /protein_id="AAA47286.1" FT /translation="MAFLMSEFIGLGLAGAGVLSNALLRRQELQLQKQAMENGLVLKAD FT QLGRLGFNPNEVKNVIVGNSFSSNVRLSNMHNDASVVNAYNVYNPASNGIRKKIKSLNN FT SVKIYNTTGESSV" XX SQ Sequence 7437 BP; 1924 A; 1839 C; 1893 G; 1781 T; 0 other; gtgaaagtta tggcggctat gtcgcgcctt actggcatga ctactgctat tttaccagaa 60 aagaaaccct tggatttctt cctggacctc agggacaaga cccctccctg ttgtattcgg 120 gcaaccggaa gactggcttg gccagttttt ccgggacaaa acggaaaaga aggacctcta 180 gagacatgta acaagtgtgg caaatggctt aacggatttg gtaattttgg actagaggat 240 cttggtgatg tttgcttgtg ttccatagcc caacagaaac acaagtttgg acctgtctgc 300 ctgtgcaatc gtgtctacat acacgactgc ggtcgttggc ggcgccgcag tcgtttcttg 360 aagcactaca aggcattaaa taaggttatt ccctgtgctt accagttcga cgaaagtttt 420 cccaccccta tttttgaagg ggaggttgat gacttatttg ttgagcttgg ggcaccaacc 480 agcatgggtt ttatggacaa gaaattactc aaaaagggta agaagctgat ggacaagttt 540 gttgacgttg acgaaccctg tttgacatca agagacacca gcctgctcga ctccatagct 600 tcggataaca ccatacgtgc gaagctggaa gaggagtatg gtgttgaaat ggtgcaggca 660 gcgcgtgaca ggaaagactt catgaagaac ctcaggctcg ccttggacaa tcggcccgcg 720 aaccctgtga cctggtacac taaactcggc aatataactg aaaaagggaa gcagtgggca 780 aagaaggttg tttatggtgc ccgcaaggtg actgaccccc tgaaaacgtt ggcttcaatc 840 ttgctagttg gcctccacaa cgtcattgcc gtggacacaa cagtcatgtt atcaacgttc 900 aagcccgtga acctgctagc gatcctcatg gactggaaca atgacttaac tgggtttatc 960 accacacttg tgaggctgct ggagctgtat ggtgtagtac aggcaactgt caacttgatc 1020 attgaaggtg tgaagagttt ctgggacaag gtggtctgtg caacggaccg ctgctttgac 1080 ttgctcaaga ggctgtttga cacatttgag gactccgtcc ccacggggcc aactgctggc 1140 tgcctcatct tcatggcttt tgtcttttcc actgttgtcg ggtacctgcc caacaacagt 1200 gtaatcacaa ctttcatgaa gggtgctggc aagctcacaa cctttgcagg ggttgttggt 1260 gctatccgaa cattatggat cactatcaac caacacatgg tggccaagga cctcaccagt 1320 gtacagcaaa aggttatgac agttgtgaaa atggctaatg aggcggcaac gctggaccag 1380 ctcgagatcg ttagctgcct ctgctcagac ttggaaacca cactaacaaa caggtgcacc 1440 ctgccatcat acaaccaaca tctcgggatc ttaaatgcat cccagaaggt tataagtgac 1500 ctacacacca tggtccttgg gaagatcaac atgacgaagc agagaccaca gcccgtggct 1560 gtcattttca agggagcccc gggtattggc aaaacctact tagtccacag gattgcgcgg 1620 gacttgggct gccagcaccc tagtacaata aattttggtc ttgaccactt cgactcgtac 1680 acaggtgagg aggttgctat tgcggatgag ttcaacactt gtggcgacgg agagagttgg 1740 gttgagctgt ttatccagat ggtcaacaca aacccgtgcc cactcaactg tgacaaggct 1800 gagaacaaga acaaagtttt caactcaaag tacctactgt gcacaacaaa ttccaacatg 1860 atactaaatg cgacccaccc tcgtgctggc gcattttata gaagggttat gattgttgaa 1920 gcacgtaaca aggcagttga aagctggcaa gccaccaggc atggctccaa accggggaaa 1980 tcctgctaca gcaaggatat gtcgcaccta accttccagg tttaccccca taacatgcct 2040 gctccagggt ttgtgtttgt tggtgacaaa ctggtgaagt ctcaggtcac accaagggag 2100 tacaagtaca gtgagctctt ggaccttatc aaaagtgagc accctgacgt ggcctcattc 2160 gagggtgcca acaaatttaa ctttgtctac ccagacgccc aatacgacca ggcgctcctc 2220 atgtggaaac agtactttgt tatgtatggt tgtgtggcaa gacttgcgaa gaatttcgta 2280 gatgacatcc catacaatca agttcacata tcgagggcga gcgacccaaa gattgagggg 2340 tgtgtggagt accagtgtaa gttccaacat ctttggcgca tggttcccca gtttgttttg 2400 gggtgtgtga atatgacaaa ccagcttggc acccctttga cccaacagca actagacagg 2460 atcaccaacg gggtcgaagg cgtcactgtt acaacggtga acaacatcct accgttccac 2520 tcacagacca cgctcatcaa cccctctttc atcaaactga tttgggcagt tagaaaacac 2580 ctcaaaggac tcagcggtgt gaccaaggtg gctcaattca tttggcgtgt catgactaat 2640 ccagtggacg cctatggaac cctggtcagg accctcaccg gggctgctac tttttcagac 2700 gacccggttt ccacaacaat catctgttcc aactgcacaa tccaactcca ctcctgcggt 2760 ggactacttg tcaggtactc aagggaccct gtccccgtgg catcagacaa cgttgaccgc 2820 ggtgaccaag gcgttgacgt gttcaccgac cccaacctca tctctgggtt cagttggagg 2880 cagattgcgc acctatttgt tgaggtgatc tcacacttgt gtgcaaacca ccttgtcaac 2940 cttgcgacca tggcagccct gggtgcagtt gcaacgaaag cttttcaggg cgtgaaaggc 3000 aagacaaaac gtggtcgtgg tgcaagagtg aacttgggca acgacgagta cgatgaatgg 3060 caagctgcac gtagagaatt cgtcaacgca cacgacatga ctgcagagga gtatcttgca 3120 atgaagaaca aagctgccat gggaagtgac gaccaagact ccatcatgtt caggagctgg 3180 tggacccgga gacaactgag acctgaagag gaccaggtca ccatcgttgg caggagtgga 3240 gtgagaaatg aagtcatccg caccagagtt agacaaactc caagagggcc aaagacgcta 3300 gacgatggtg gcttttatga caatgactat gagggtttac ctgggttcat gagacacaat 3360 ggcagtggct ggatgatcca cataggcaac gggttgtaca tttccaacac tcataccgcc 3420 aggtcaagtt gctcagaaat tgtcacatgc tcacccacca ctgacctgtg cctcgtcaag 3480 ggtgagtcaa tccgcagtgt tgctcagatc gctgaaggta ccccagtttg tgactggaag 3540 aagtctccaa tctcaaccta tggcatcaag aagacattgt cagactccac aaagattgac 3600 gtgctggcgt atgacggttg cacacagacc acccacgggg actgtgggct gccgttgtat 3660 gactccagcg ggaagattgt tgccatacac actggcaagt tgttggggtt ttcaaagatg 3720 tgcacattga ttgatctcac cattacaaag ggagtttatg aaacgtcaaa cttcttctgt 3780 ggtgagccaa ttgactatag aggcatcact gcacataggc tcgtcggtgc ggaacccaga 3840 cctcccgtta gtggaaccag gtatgctaag gtcccgggtg tgcctgatga gtataagacc 3900 gggtacaggc cagccaacct tgggcgtagt gacccagaca gtgacaagtc actcatgaac 3960 attgcggtga agaacttaca ggtgtaccaa caagagccaa agcttgacaa ggtggatgag 4020 tttattgagc gagcggctgc cgacgttttg ggctacttgc gcttcctaac caagggggag 4080 cgccaggcaa acctgaactt taaagctgcg ttcaacactc tagacctgtc aacctcttgc 4140 gggccctttg ttccaggaaa gaagattgac catgtgaaag atggagtgat ggatcaagtc 4200 ctagctaaac acctttacaa gtgctggagc gttgccaact ccggcaaagc ccttcaccac 4260 atatacgcgt gtgggttgaa ggatgaactt agacctcttg acaaggtgaa ggagggaaag 4320 aagaggctgt tgtggggctg tgacgttggt gtcgccgtgt gtgctgccgc tgttttccac 4380 aacatatgct acaaactaaa gatggtcgcg cggtttggcc ccattgcagt tggcgttgac 4440 atgacatctc gtgacgttga cgtcatcatc aacaacctca cctccaaggc cagcgacttc 4500 ttgtgcttgg actactcaaa gtgggactcc accatgtcac cgtgtgttgt caggctagcc 4560 attgatatct tagcagattg ttgtgagcaa acggaactca ctaaaagtgt cgttctcaca 4620 ctgaaatccc accccatgac catacttgac gccatgatcg tgcaaactaa gcgtggcctt 4680 ccgagtggca tgcccttcac ctcggtcatc aactccattt gtcattggtt gctttggtcc 4740 gcagccgttt acaagtcttg tgctgaaatt ggcttacact gctccaacct gtacgaggac 4800 gccccattct acacgtatgg cgatgatggc gtgtatgcca tgactccgat gatggtgagt 4860 cttttgcctg ctataataga aaatttgaga gactacggtt tgtcacccac cgccgcagac 4920 aaaacagagt tcatagatgt ttgcccactc aacaagatct cgttcttgaa gcgcaccttc 4980 gagctcacgg acattgggtg ggtgtcaaaa ctagacaaat ccagcatact cagacagtta 5040 gagtggagca aaacaacatc tagacacatg gtgattgaag aaacatacga cttggccaaa 5100 gaagagcgtg gtgtgcagct agaggaactg caagttgctg ccgctgcaca tggccaggag 5160 tttttcaact ttgtttgcag ggagctcgag cgacaacagg catacaccca gttcagtgtt 5220 tacagctacg atgctgctag gaagatactt gcagatcgta agagagtcgt ctcggtagta 5280 cctgacgacg aatttgtgaa tgttatggag ggcaaagccc gtgcagcgcc gcaaggcgaa 5340 gcagcgggca ctgccaccac agcatcagtt cccggaacca cgactgatgg catggatcct 5400 ggcgttgtgg ccactaccag cgtgatcact gcagaaaatt catccgcatc gattgcaaca 5460 gcagggattg gcggaccacc ccaacaggtg gaccaacaag agacatggag aacaaatttt 5520 tattacaatg atgttttcac ttggtcagtc gcggacgccc ctggcagcat actttacacc 5580 gtccaacatt ctccacaaaa caacccattc acagccgtgc tgagccagat gtacgctggc 5640 tgggctggtg gcatgcagtt tcgcttcata gttgccgggt caggtgtgtt tggtgggcga 5700 ctggtccggg ctgtgatacc accaggcatc gagattggac cagggttgga ggttaggcag 5760 tttcctcatg ttgtcatcga tgcccgttca ctcgaacctg ttaccatcac catgccagac 5820 ttgcgtccca acatgtacca tccaactggt gaccctggcc ttgttcccac actagtcctt 5880 agtgtttaca acaaccttat caacccgttt ggtgggtcca ctagtgcaat ccaggtgaca 5940 gtggaaacaa ggccaagtga agactttgag ttcgtgatga ttcgagcccc ctccagcaag 6000 actgttgact caatttcgcc cgcaggcctc ctcacgaccc cagtccttac tggggttggc 6060 aatgacaaca ggtggaacgg ccaaatagtg ggactgcaac cagtacctgg agggttttct 6120 acgtgcaaca ggcattggaa cttgaatggc agcacatatg gctggtcaag ccctcggttt 6180 ggcgacattg accatcgaag aggcagtgca agttactctg ggagcaacgc aaccaacgtg 6240 cttcagtttt ggtatgccaa tgctgggtct gcaatcgaca accccatttc ccaggttgca 6300 ccagacggct ttcctgacat gtcgttcgtg ccctttaacg gccccggcat tccagctgcg 6360 gggtgggttg gatttggtgc aatctggaac agtaacagcg gtgcccccaa cgttacgact 6420 gtgcaggcct atgagttagg ttttgccact ggggcaccag gcaacctcca gcccaccacc 6480 aacacttcag gtgcacagac tgtcgccaag tccatttatg ccgtggtgac tggcacagcc 6540 caaaacccag ccggattgtt tgtgatggcc tcgggtatta tctccacccc aaatgccagc 6600 gccatcacat acacgcctca accagacaga attgtaacca cacccggcac tcctgccgct 6660 gcacctgtgg gtaagaacac acccatcatg tttgcgtctg tcgtcaggcg caccggtgac 6720 gtcaacgcca cagctgggtc agccaacggg acccagtacg gcacaggctc ccaaccactg 6780 ccagtgacaa ttggactttc gctcaacaac tactcgtcag cacttatgcc cggacagttt 6840 ttcgtttggc agttaacctt tgcatctggt ttcatggaga taggtttaag tgtggacggg 6900 tatttttatg caggaacagg ggcctcaacc acactcattg acctgactga actcattgac 6960 gtacgccctg tgggacccag gccgtccaaa agcacactcg tgttcaacct ggggggcaca 7020 gccaatggct tttcttatgt ctgaattcat cggattggga cttgcaggtg ccggtgtcct 7080 gagcaatgca ttgctccgca ggcaagagct gcaactacaa aaacaagcta tggagaatgg 7140 gttggttttg aaagccgacc aattaggtag gttaggtttt aatccaaatg aagttaagaa 7200 tgtgattgta ggtaatagtt ttagtagtaa tgttagatta agcaatatgc ataatgatgc 7260 tagtgtagtt aatgcttata atgtgtataa tcccgctagc aatggcatta gaaagaaaat 7320 taagagtttg aataatagtg ttaagattta taataccaca ggcgagtcca gtgtttgatt 7380 tgattttatt ggttttaaaa tttggtttaa ttgggtttat agtttaaagt aagctat 7437 //