ID M65026; SV 1; circular; genomic DNA; STD; VRL; 8000 BP. XX AC M65026; XX DT 24-JAN-1992 (Rel. 30, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 7) XX DE Rice tungro bacilliform virus ORF2, ORF3, and ORF4 genes, complete cds. XX KW . XX OS Rice tungro bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Tungrovirus. XX RN [1] RC Erratum:[Virology 1992 Feb;186(2):798]] RP 1-8000 RX DOI; 10.1016/0042-6822(91)90783-8. RX PUBMED; 1926781. RA Qu R.D., Bhattacharyya M., Laco G.S., de Kochko A., Rao B.L., RA Kaniewska M.B., Elmer J.S., Rochester D.E., Smith C.E., Beachy R.N.; RT "Characterization of the genome of rice tungro bacilliform virus: RT comparison with Commelina yellow mottle virus and caulimoviruses"; RL Virology 185(1):354-364(1991). XX RN [2] RP 1-8000 RA de Kochko A.; RT ; RL Submitted (01-JAN-1991) to the INSDC. RL Cell biology, TSRI, 10666 N. Torrey Pines Rd., La Jolla, CA 92037, USA XX DR MD5; 84fedfe933f47dc422fec1c15f1e6aa0. DR EuropePMC; PMC1087892; 15831103. DR UniProtKB/Swiss-Prot; P27500; P1_RTBVP. XX CC On Jun 26, 1996 this sequence version replaced gi:333965. XX FH Key Location/Qualifiers FH FT source 1..8000 FT /organism="Rice tungro bacilliform virus" FT /mol_type="genomic DNA" FT /db_xref="taxon:10654" FT misc_feature join(8000,1..668) FT /note="putative ORF1, stop codon at nucleotide 67; FT putative" FT CDS 665..997 FT /codon_start=1 FT /note="ORF2" FT /db_xref="InterPro:IPR009417" FT /db_xref="UniProtKB/Swiss-Prot:P27499" FT /protein_id="AAB03093.1" FT /translation="MSADYPTFKEALEKFKNLESDTAGKDKFNWVFTLENIKTAADVNL FT ASKGLVQLYALQEIDKKINNLTTQVSKLPTTSGSSSAGAIVPAGSNTQGQYKAPPKKGI FT KRKYPA" FT CDS 994..6021 FT /codon_start=1 FT /note="ORF3" FT /db_xref="GOA:P27502" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR034728" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/Swiss-Prot:P27502" FT /protein_id="AAB03094.1" FT /translation="MSLRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQEVE FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN FT VKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNAGCG FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKD FT IVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNHENTSRVPTKALIYQNLQGGESLR FT FSNYKQTRMHDPTENNSDEDEDLKILGEQLNIKMARFYTMQTPEEELREVIQQLEREKQ FT AMIAKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFEKLGLTGWEDLDQDSIE FT TEEITEWENPNQVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIE FT KAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPIEASKDRNFERI FT GSSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRI FT TGLVLYLVQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQR FT ELEALNCEDPTKIQPFMAEYLKKASEAKKGFDVVYVERLFDRLPEAVGKVVKADFVKDG FT NSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKILKRVTN FT YNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASLIDGLDEDIVSIAS FT DDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSYFTDYNKTVSCKTCET FT QYCKTCSDQLALEVTEVKKPTKEETMIDDLKLNVKNLEFRVTILEHKVEMQNLQDKFET FT MQIRNKSEITEIPTTSLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALIDSG FT STHNIICPTLIPASWINNTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGIKYK FT LGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFARKH FT GGRPPLFSNIPETYNKIPHLHSYQPQPILGYKNEIGNQSLITMVKELEALGFIGDDITK FT NRTTWVCDFKIINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRTAA FT FIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGF FT HHMKLKDEFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDI FT LIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIV FT DKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWN FT IIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYAS FT GNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSKTR FT WIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNPDSTESHSIDSPESI FT PLYIDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA" FT CDS 6042..7211 FT /codon_start=1 FT /note="ORF4" FT /db_xref="InterPro:IPR009347" FT /db_xref="UniProtKB/Swiss-Prot:P27501" FT /protein_id="AAB03095.1" FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSSRLSHVSRGLLDHL FT FTFSSDNTERVRKLHILADYLYLLESERESYKNEWISLKDQVSLLQKQNSELRARIATN FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKLQKD FT CEPFRGVYMSFLTNVKFLVLCEAGYWTVPDIETNTTESILSLSQKKGEDLLQKGVVIFN FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWENMVDED FT EGEVVYISKYTKIIKVTKEHAWAWPEHDGDTMSCTTSIEDEWIHRMDNA" XX SQ Sequence 8000 BP; 3270 A; 1250 C; 1444 G; 2036 T; 0 other; tggtatcaga gcgatgttcg aactttaagg gaaaaataga atacaatcta gtcaaactaa 60 ttacataagt tccgaagagg gatcttattt ctcaaaatat tgagtcacgt tacgaaaaac 120 ttgaattctt agacttagca gtctggggaa aagagaaaaa acaaaaatat ttactatcta 180 ccgataatat tagcttttat tgttattttg atactagtaa aactagtgaa tcagaaagaa 240 agcatacctt tcattctgat aataagcaac tcaatagtat tgtagacctt attattaagc 300 attctgaaaa aaccaaaaat attaaggaag aattagaaaa atatagtcag tccctagata 360 agatattaga tttaaaacct actaaaaaac aagttgaaaa actattagaa aatcaaaact 420 taattagcaa gaactttgat tatatcaaag aacaaaacac tcaactagaa aaatccctaa 480 gaaaaacagt taagttagaa gactccatta atactctatt agtagaaata caacaagcca 540 gacctaagga agtagaatta agaactctta aaatagcaga acagaactct aaggcaatag 600 aaaaatttga gcaagaaatt aaggacttaa gagaaatcct ggaattcctt aagcatcaag 660 ctacatgagc gctgattatc caactttcaa ggaagccctt gaaaagttta aaaacctaga 720 atcagataca gccggaaaag ataagtttaa ttgggtattt actctagaaa atataaagac 780 agctgcagac gtaaatttag catctaaggg tttagtacaa ctttacgctt tacaagaaat 840 tgataaaaag attaataatc ttacaaccca agttagtaag ttacctacaa ctagtggaag 900 tagttcagca ggagctatag tacctgcagg aagtaacacc caaggtcagt acaaagcacc 960 acctaagaaa ggaattaaaa gaaaatatcc agcatgagcc ttagaccatt tactggtact 1020 tctagaacta taacccaaga ttcaacctct gaatctaata taaaaaaggg aaaaaactca 1080 acaaaaagag aattaataga agaagtagat gttaatcaag aagtagagaa ctttgattgg 1140 aaaaaactat caggaattaa acctaataaa ctatatgaga aaaattggca agaaaaggtt 1200 aagttaaaac aacaatccat agtctcagca tataaagaag aagctattag tgtaactcat 1260 aatgcatata ctactacttt atttccacaa gaagtaatta aaaatgttaa gaatcaggga 1320 aaactttatt atcatatagg catgatggcc ataggagtta aaggacttca tagaagaaaa 1380 ataggaacta aagtcatgat aatgttttat gatgatagtt tcggtaaagc tagggaagct 1440 agcattggat caatagaaat ggatatgaac gccggttgtg gagtgttcta ctcctgcccc 1500 gactttgcaa aatatattaa agatttatca caccttaaga tagggataca aaccctagga 1560 tatgaaaatt atgaaggaaa gaacctttca gtagcaatca aaactatagg aagattgacc 1620 accaatatac aatcaaaata taagataaat gtgaaagata ttgtagaaca gatatcatca 1680 caaggaatca ttatggtagc acccatggaa atagattcat cacacctaga tgggaatgaa 1740 tgggatctta gtaaattctt aaaccatgaa aacacaagta gagtcccaac caaagcctta 1800 atatatcaga atttacaagg aggagaatcc ttaagatttt caaactataa acaaactaga 1860 atgcatgatc ctactgaaaa caattcagat gaagatgaag atttaaaaat cttaggagaa 1920 caactaaata ttaaaatggc aagattttac acaatgcaaa ccccagaaga agaattacga 1980 gaagtaattc aacaattaga aagagaaaaa caagccatga tagcaaaact agaagctaaa 2040 atgaaagagt catctaaaat ggcaatagta gaagataatt tcaatccaaa taacgaatat 2100 ctagaagata catattctga atatgaagat ctagaattcg agaaattagg attaactgga 2160 tgggaagact tagatcagga ttccatagaa accgaagaaa taactgaatg ggaaaatcct 2220 aatcaagtac ttcatagaga aattagagca tataaatcag tatccgaaca aatagaagat 2280 atattcggag aactactaaa ggaacacgga aactatgata tggccctcaa aaacctagaa 2340 gaaaaatacg acctagataa aatagaaaag gccaaatcta tagaagaaat agctaagtca 2400 tctacatcgt cagaaattag gccaactaaa cgacctaaag aagaacaaac agcctatgaa 2460 gatgatatga gagatgattg gaaaagaaaa gaattaacag taaatcccat agaagcctca 2520 aaagatagaa attttgaaag aataggaagt tcatataaga aaaactttta ccctagtaga 2580 agtgaaatat taaacctaga taacgttccc ccacaatttt actatgatca actagtaacc 2640 tgggaaggaa tagttaaaaa tgaatgggaa gcacgtaaga aagatgggat ggatatgtgg 2700 tcttggatgg atggtagaat aacaggatta gtcctatact tagtccaaga ttggatatct 2760 aaaaatcagg cagcctataa tgatataaaa tctagaggtg atagacctga aaacttcgta 2820 aaaatggtaa aagataggtt cttaatagaa gatcctacag atgaaagaag aacagcatta 2880 caaaggttag cacaaagaga attagaagcc ttaaactgcg aagatcctac taaaattcaa 2940 ccatttatgg ctgaatatct taagaaagca tcagaagcca aaaaaggatt tgatgtagtt 3000 tatgtagaaa gactctttga tagattacca gaagctgtag gaaaggtagt aaaagcggac 3060 tttgttaaag acggtaattc ttatgaagca ggaataggaa tagcagtttc atatatatcc 3120 acatggatga gagcaaaatg cattaaggaa acagaagcta aaactcaaaa gaaagcatcc 3180 ttagcattct gtagatccat atatactata ggagattata agaaacgaaa aatcctaaaa 3240 agagttacaa actataataa aaataggaga aaaaactatg tcagaagacc tagcatcaag 3300 aaaaaatgta gatgttatat ctgtcaagat gaaaatcacc tagctaatag atgtcctaga 3360 agatatacta atcaggctag agcaagtcta atagatggat tagacgaaga tatagtatct 3420 atagcatcag atgacgagga tattgaaaat tttcttgaaa taatagaact tgatgaattt 3480 atagcacatt ctagtcaaga acatgaacat acatgggaaa tcggaggaaa gaaagataag 3540 gtatgtgaaa tttgcagtta ttttacggat tataataaaa ctgttagctg taaaacttgt 3600 gaaacccaat actgcaaaac atgttctgat caactagcac tagaagtaac agaagtcaaa 3660 aaacctacga aagaagaaac aatgatagac gacctaaaat taaatgttaa aaatctagaa 3720 tttagagtca ccattctaga acataaggta gaaatgcaga atcttcaaga taaattcgaa 3780 actatgcaaa ttagaaataa atcagaaata acagaaatac caacaacctc attagctatg 3840 agagcaaatg aatcaaatta tataaaaaca tcaattaata aaactgcagg atgttatgta 3900 gaaacaaaaa tttcatttaa caatgaaaac agaatcataa cagccctaat agattcagga 3960 tcaacacata atataatatg tccaacattg ataccagcat catggattaa taatacacat 4020 agagaaatta taatgtttgc tgtagacaat agcaaatata atctgaatca agaattaata 4080 gatgatataa aattacaatt ccaagaagtt gatgaaactt ttggaataaa atataaatta 4140 ggacaaacct atgtagcacc taagccaaca aaaacattta taataggaca cagattcctt 4200 acaaatgaaa atggtagtgt tacaatccat aaagattata taactataca aaaaactacg 4260 ggaatatacc caacagccag acacgaactt aaatcagagt ttgcgcgaaa gcatggtgga 4320 cgcccgccat tattttcaaa cattcctgaa acctataaca aaattcctca tttgcattca 4380 tatcagcctc aaccaatatt aggatataag aatgaaatag gaaatcaaag tttaatcact 4440 atggtgaaag aattagaagc acttggattc ataggagatg acattactaa aaacagaaca 4500 acgtgggtat gtgacttcaa aatcataaac ccagatatca atataacttg tgcaacaatt 4560 ccatacacgc cagcagataa agaagttttt gaaaaacaaa ttaaggagtt actagataat 4620 aagttaatca agaaagctga tccaacatgt agacatagaa cagcagcatt catagtaaga 4680 aatcattctg aagaagtagc tcagaaacct cgaatagttt ataactataa acgtttaaat 4740 gataatatgc atacagatcc ttttaatatt cctcataaga tttcaatgat taatctaata 4800 cagaaagcta atatattttc taagtttgat ctaaaagcag gatttcacca tatgaaatta 4860 aaagatgaat tcaaagattg gactactttt acatgctcag aaggattata tacttggaac 4920 gtctgtccat ttggtatagc taacgctcct tgtgcatttc aaagatttat gcaggaatcc 4980 tttggagatt taaagtttgc attattatat atagatgaca tacttattgc atctaataac 5040 gaaaaagagc atatagaaca tcttaagatt ttctttaata gagtaaaaga agtaggatgt 5100 gttcttagta agaaaaaatc aaaaatgttt cttaaagaag tagaatatct tggagtagaa 5160 attaaagaag gaaagattag tcttcagccg catatagttg ataagatcaa aaaatttgat 5220 aaaaataaac tcaacaccct aaagggacta caagcatatc tagggttact caattatgcc 5280 agaggataca tcaaagacct atcaaagcta gtaggaccac tttataaaaa gacaggaaaa 5340 aatgggcaaa gaatctttaa caaagaagat tggaatatca tctttaagat agaaagagag 5400 gtatcaaaga taaagccttt agaaagacct aaagaaaccg actacatcat tatagagaca 5460 gatgcgtcag aagaaggctg gggagcagtc ttagtctgta agccagataa atatagtggc 5520 aaggacactg agaaaatagc aggatacgca tcaggaaact ttggagagaa gaaaacctgg 5580 actagtttag attatgaaat agaagctata aatgaagccc taaacaagtt ccagatatac 5640 ttagacaaag attttacaat cagaactgat tgtgaagcaa tagtgaaagg gataaaaaca 5700 gaagactata aaaagagatc aaaaacaagg tggatcaagt taagagataa tctcttaaag 5760 gatggataca agcctacctt tgagcatatc aagggaaaca aaaacttttt accaaacttc 5820 ttatcccgtg agggagattt tattttaaaa tgtcttcaaa accccgattc tacggaatca 5880 cattctatag attcgccaga atcaattcca ctatatatcg attcgaaaga atcacattct 5940 atagagtctg atgactcaat tccactatac agggacaagc ttcttcctct agtcgaaagg 6000 ctaaaggaaa agagtgccta actaagatcg gaggcatcac catgaatata gagtacccgt 6060 actcaatcca cataatagac aagaacaagg ttccgatcta cgatcaagga aatctcttcc 6120 acactgagaa gtcctcaaga ctttcacatg tgtccagagg tttgctggat catctcttta 6180 ctttttcgtc tgataatact gagcgagtta ggaagctcca catattagcc gattatcttt 6240 acctattaga aagtgagaga gagtcatata aaaatgagtg gattagcttg aaggatcaag 6300 ttagtcttct acaaaaacaa aatagtgagt tgagagctag gatagccacc aacaaagaaa 6360 taatagaggg actgagagag ccagttaaaa agccaatata cacaacccag gataaagaga 6420 ggctccgtgt tttcttttgc gaagaaagaa gcatggaata tatatattat catataaaaa 6480 ggctagctca gcagagctat tattcccacc taaataaatt acagaaggat tgtgaaccct 6540 ttagaggggt ctacatgtct ttcttaacta atgttaagtt cctagtatta tgtgaagctg 6600 gatactggac tgtaccagat atagaaacta atactacaga atctatatta agtctatccc 6660 agaagaaagg agaagatctt ctacaaaagg gagtagtaat atttaatgag cttgaaggag 6720 gatatcaact ctctccaagg tttattggag acctttatgc tcatggtttt attaaacaaa 6780 taaacttcac aaccaaggtt cctgaagggc taccgccaat catagcggaa aaacttcaag 6840 actataagtt ccctggatca aataccgtct taatagaacg agagattcct cgctggaact 6900 tcaatgaaat gaaaagagaa acacagatga ggaccaactt atatatcttc aagaattatc 6960 gctgtttcta tggctattca ccattaaggc catacgaacc tataactcct gaagaatttg 7020 ggtttgatta ctacagttgg gaaaatatgg ttgatgaaga cgaaggagaa gttgtataca 7080 tctccaagta tactaagatt atcaaagtca ctaaagagca tgcatgggct tggccagaac 7140 atgatggaga cacaatgtcc tgcaccacat caatagaaga tgaatggatc catcgtatgg 7200 acaatgctta aagaagcttt atcaaaagca actttaagta cgaatcaata aagaaggacc 7260 agaagatata aagctggaac atcttcacat gctaccacat ggctagcatc tttactttag 7320 catctctatt attgtaagag tgtataatga ccagtgtgcc cctggactcc agtatataag 7380 gagcaccaga gtagtgtaat agatcatcga tcaagcaagc gagagctcaa acttctaaga 7440 gagcaagaga ggagcttatc ctctcaaccc ctcttcaaga agcaaaggcg atcaatggct 7500 caggtcagtg agtagtcgtc tttaaggttc ctctaggaac ctctgtgtaa tatgtttgta 7560 cttatgattg tatttctcaa aacctatccg ctgcatgaat aaagctctta tatttatcct 7620 acacccttgt gataaaacat gaagtcatac tcgttctaag attaagtgtt ctaaaaatac 7680 ttcgaagcat tgaaaagggg gctaaagggg gaaaaagtac cgtcagccgt gttatggcaa 7740 gggaagaagt accatgaata ccctatagat gttagaagga agatgagaac taagtatctt 7800 atgaacaatg ggtagctgat ttctgattat cattaacaag tatcgttata atccataagc 7860 tttgaaagat ctgctagtgt ggataccaaa aggctgtcgt ggttcgccca gtcgacggat 7920 gaggtcataa acgaagcact agtaggtaac taagaggctt agggatgagc aacgagaaaa 7980 gttagggggg tgcctagaaa 8000 //