ID   M55918; SV 1; linear; genomic DNA; STD; VRL; 2319 BP.
XX
AC   M55918;
XX
DT   07-JUN-1991 (Rel. 28, Created)
DT   19-OCT-2008 (Rel. 97, Last updated, Version 11)
XX
DE   Chicken anemia virus ORF1 (Cux-1), ORF2 (Cux-1), and ORF3 (Cux-1) genes,
DE   complete cds.
XX
KW   .
XX
OS   Chicken anemia virus
OC   Viruses; Anelloviridae; Gyrovirus.
XX
RN   [1]
RP   1-2319
RX   PUBMED; 1851873.
RA   Noteborn M.H.M., de Boer G.F., Roozelaar D.J., Karreman C., Kranenburg O.,
RA   Vos J.G., Jeurissen S.H.M., Hoeben R.C., Zantema A., Koch G.,
RA   van Ormondt H., van der Eb A.J.;
RT   "Characterization of cloned chicken anemia virus DNA that contains all
RT   elements for the infectious replication cycle";
RL   J. Virol. 65(6):3131-3139(1991).
XX
DR   MD5; fa5d57e7e0cf3a0009dc4c7682a9fe01.
DR   EuropePMC; PMC104131; 10196248.
DR   EuropePMC; PMC2605446; 18954433.
DR   EuropePMC; PMC2812408; 20007276.
DR   EuropePMC; PMC2858149; 20377896.
DR   EuropePMC; PMC2952689; 20855099.
DR   EuropePMC; PMC3133700; 21177928.
DR   EuropePMC; PMC3147908; 21632766.
DR   EuropePMC; PMC3647419; 23628223.
DR   EuropePMC; PMC4207886; 25294222.
DR   EuropePMC; PMC5309784; 28198372.
DR   EuropePMC; PMC5344997; 28344576.
DR   EuropePMC; PMC548473; 15709005.
DR   EuropePMC; PMC6338413; 30657774.
DR   EuropePMC; PMC6341152; 29635866.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2319
FT                   /organism="Chicken anemia virus"
FT                   /isolate="Cuxhaven-1"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:12618"
FT   gene            144..2292
FT                   /gene="Cux-1"
FT   repeat_region   144..260
FT                   /rpt_unit_range=219..239
FT                   /rpt_unit_range=240..260
FT                   /rpt_unit_range=165..185
FT                   /rpt_unit_range=186..206
FT                   /rpt_unit_range=144..164
FT                   /note="21-bp repeats with ATF sites"
FT   regulatory      261..266
FT                   /gene="Cux-1"
FT                   /regulatory_class="CAAT_signal"
FT   regulatory      305..310
FT                   /gene="Cux-1"
FT                   /note="SP1 box"
FT                   /regulatory_class="promoter"
FT   regulatory      323..328
FT                   /gene="Cux-1"
FT                   /regulatory_class="TATA_box"
FT   CDS             380..1030
FT                   /codon_start=1
FT                   /gene="Cux-1"
FT                   /product="ORF1"
FT                   /db_xref="GOA:P69484"
FT                   /db_xref="InterPro:IPR004118"
FT                   /db_xref="UniProtKB/Swiss-Prot:P69484"
FT                   /protein_id="AAA91822.1"
FT                   /translation="MHGNGGQPAAGGSESALSREGQPGPSGAAQGQVISNERSPRRYST
FT                   RTINGVQATNKFTAVGNPSLQRDPDWYRWNYNHSIAVWLRECSRSHAKICNCGQFRKHW
FT                   FQECAGLEDRSTQASLEEAILRPLRVQGKRAKRKLDYHYSQPTPNRKKAYKTVRWQDEL
FT                   ADREADFTPSEEDGGTTSSDFDEDINFDIGGDSGIVDELLGRPFTTPAPVRIV"
FT   CDS             486..851
FT                   /codon_start=1
FT                   /gene="Cux-1"
FT                   /product="ORF2"
FT                   /db_xref="GOA:Q99152"
FT                   /db_xref="InterPro:IPR006858"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q99152"
FT                   /protein_id="AAA91823.1"
FT                   /translation="MNALQEDTPPGPSTVFRPPTSSRPLETPHCREIRIGIAGITITLS
FT                   LCGCANARAPTLRSATADNSESTGFKNVPDLRTDQPKPPSKKRSCDPSEYRVSELKESL
FT                   ITTTPSRPRTAKRRIRL"
FT   CDS             853..2202
FT                   /codon_start=1
FT                   /gene="Cux-1"
FT                   /product="ORF3"
FT                   /db_xref="GOA:Q99153"
FT                   /db_xref="InterPro:IPR007291"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q99153"
FT                   /protein_id="AAA91824.1"
FT                   /translation="MARRARRPRGRFYSFRRGRWHHLKRLRRRYKFRHRRRQRYRRRAF
FT                   RKAFHNPRPGTYSVRLPNPQSTMTIRFQGVIFLTEGLILPKNSTAGGYADHMYGARVAK
FT                   ISVNLKEFLLASMNLTYVSKIGGPIAGELIADGSKSQAADNWPNCWLPLDNNVPSATPS
FT                   AWWRWALMMMQPTDSCRFFNHPKQMTLQDMGRMFGGWHLFRHIETRFQLLATKNEGSFS
FT                   PVASLLSQGEYLTRRDDVKYSSDHQNRWQKGGQPMTGGIAYATGKMRPDEQQYPAMPPD
FT                   PPIITATTAQGTQVRCMNSTQAWWSWDTYMSFATLTALGAQWSFPPGQRSVSRRSFNHH
FT                   KARGAGDPKGQRWHTLVPLGTETITDSYMSAPASELDTNFFTLYVAQGTNKSQQYKFGT
FT                   ATYALKEPVMKSDAWAVVRVQSVWQLGNRQRPYPWDVNWANSTMYWGTQP"
FT   regulatory      2287..2292
FT                   /gene="Cux-1"
FT                   /regulatory_class="polyA_signal_sequence"
XX
SQ   Sequence 2319 BP; 591 A; 666 C; 643 G; 419 T; 0 other;
     gaattccgag tggttactat tccatcacca ttctagcctg tacacagaaa gtcaagatgg        60
     acgaatcgct cgacttcgct cgcgattcgt cgaaggcggg gggccggagg ccccccggtg       120
     gcccccctcc aacgagtgga gcacgtacag gggggtacgt catccgtaca ggggggtacg       180
     tcatccgtac aggggggtac gtcacaaaga ggcgttcccg tacagggggg tacgtcacgc       240
     gtacaggggg gtacgtcaca gccaatcaaa agctgccacg ttgcgaaagt gacgtttcga       300
     aaatgggcgg cgcaagcctc tctatatatt gagcgcacat accggtcggc agtaggtata       360
     cgcaaggcgg tccgggtgga tgcacgggaa cggcggacaa ccggccgctg ggggcagtga       420
     atcggcgctt agccgagagg ggcaacctgg gcccagcgga gccgcgcagg ggcaagtaat       480
     ttcaaatgaa cgctctccaa gaagatactc cacccggacc atcaacggtg ttcaggccac       540
     caacaagttc acggccgttg gaaacccctc actgcagaga gatccggatt ggtatcgctg       600
     gaattacaat cactctatcg ctgtgtggct gcgcgaatgc tcgcgctccc acgctaagat       660
     ctgcaactgc ggacaattca gaaagcactg gtttcaagaa tgtgccggac ttgaggaccg       720
     atcaacccaa gcctccctcg aagaagcgat cctgcgaccc ctccgagtac agggtaagcg       780
     agctaaaaga aagcttgatt accactactc ccagccgacc ccgaaccgca aaaaggcgta       840
     taagactgta agatggcaag acgagctcgc agaccgagag gccgatttta ctccttcaga       900
     agaggacggt ggcaccacct caagcgactt cgacgaagat ataaatttcg acatcggagg       960
     agacagcggt atcgtagacg agcttttagg aaggcctttc acaacccccg ccccggtacg      1020
     tatagtgtga ggctgccgaa cccccaatct actatgacta tccgcttcca aggggtcatc      1080
     tttctcacgg aaggactcat tctgcctaaa aacagcacag cggggggcta tgcagaccac      1140
     atgtacgggg cgagagtcgc caagatctct gtgaacctga aagagttcct gctagcctca      1200
     atgaacctga catacgtgag caaaatcgga ggccccatcg ccggtgagtt gattgcggac      1260
     gggtctaaat cacaagccgc ggacaattgg cctaattgct ggctgccgct agataataac      1320
     gtgccctccg ctacaccatc ggcatggtgg agatgggcct taatgatgat gcagcccacg      1380
     gactcttgcc ggttctttaa tcacccaaag cagatgaccc tgcaagacat gggtcgcatg      1440
     tttgggggct ggcacctgtt ccgacacatt gaaacccgct ttcagctcct tgccactaag      1500
     aatgagggat ccttcagccc cgtggcgagt cttctctccc agggagagta cctcacgcgt      1560
     cgggacgatg ttaagtacag cagcgatcac cagaaccggt ggcaaaaagg cggacaaccg      1620
     atgacggggg gcattgctta tgcgaccggg aaaatgagac ccgacgagca acagtaccct      1680
     gctatgcccc cagacccccc gatcatcacc gctactacag cgcaaggcac gcaagtccgc      1740
     tgcatgaata gcacgcaagc ttggtggtca tgggacacat atatgagctt tgcaacactc      1800
     acagcactcg gtgcacaatg gtcttttcct ccagggcaac gttcagtttc tagacggtcc      1860
     ttcaaccacc acaaggcgag aggagccggg gaccccaagg gccagagatg gcacacgctg      1920
     gtgccgctcg gcacggagac catcaccgac agctacatgt cagcacccgc atcagagctg      1980
     gacactaatt tctttacgct ttacgtagcg caaggcacaa ataagtcgca acagtacaag      2040
     ttcggcacag ctacatacgc gctaaaggag ccggtaatga agagcgatgc atgggcagtg      2100
     gtacgcgtcc agtcggtctg gcagctgggt aacaggcaga ggccataccc atgggacgtc      2160
     aactgggcga acagcaccat gtactggggg acgcagccct gaaaaggggg gggggctaaa      2220
     gccccccccc cttaaacccc cccctggggg ggattccccc ccagaccccc cctttatata      2280
     gcactcaata aacgcagaaa atagatttat cgcactatc                             2319
//