ID M34077; SV 1; linear; genomic RNA; STD; VRL; 6355 BP. XX AC M34077; M22483; XX DT 14-AUG-1990 (Rel. 25, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 4) XX DE Tobacco mild green mosaic virus, complete genome. XX KW coat protein. XX OS Tobacco mild green mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 6127-6355 RX DOI; 10.1016/0042-6822(88)90070-0. RX PUBMED; 3188396. RA Garcia-Arenal F.; RT "Sequence and structure at the genome 3' end of the U2-strain of tobacco RT mosaic virus, a histidine-accepting tobamovirus"; RL Virology 167(1):201-206(1988). XX RN [2] RP 1-6355 RX DOI; 10.1016/0042-6822(90)90520-2. RX PUBMED; 2371769. RA Solis I., Garcia-Arenal F.; RT "The complete nucleotide sequence of the genomic RNA of the tobamovirus RT tobacco mild green mosaic virus"; RL Virology 177(2):553-558(1990). XX DR MD5; 4ba4b2e827345a657ac41f142647bb2c. DR EuropePMC; PMC6258955; 30257999. XX CC Draft entry and computer-readable sequence for [1] kindly submitted CC by F.Garcia-Arenal, 10-FEB-1989. The RNA appears to have a tRNA- CC like, L-shaped structure at the 3' terminus, linked to a quasi- CC continuous double-helical stalk, with five pseudoknots involved in CC the formation of the whole structure. However, the structure of CC U2-TMV RNA is less stringently conserved than the 3' termini of CC 'vulgare' and other histidine-accepting tobamoviruses. Draft entry CC and computer-readable sequence for [1] kindly submitted by CC F.Garcia-Arenal, 08-MAY-1990, for release after publication. XX FH Key Location/Qualifiers FH FT source 1..6355 FT /organism="Tobacco mild green mosaic virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12241" FT CDS 71..4900 FT /codon_start=1 FT /transl_except=(pos:3404..3406,aa:OTHER) FT /product="183 kDa protein" FT /db_xref="GOA:P18339" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/Swiss-Prot:P18339" FT /protein_id="AAA47934.2" FT /translation="MAHIQSIISNALLESVSGKNTLVNDLARRRMYDTAVEEFNARDRR FT PKVNFSKTISEEQTLLVSNAYPEFQITFYNTQNAVHSLAGGLRALELEYLMLQVPYGSP FT TYDIGGNFAAHLFKGRDYVHCCMPNLDIRDIMRHEGQKDSIEMYLSRLSRSNKVIPEFQ FT REAFNRYAEAPNEVCCSKTFQDCRIHPPENSGRRYAVALHSLYDIPVHEFGAALISKNI FT HVCYAASILAEALLLDQTEVTLNEIGATFKREGDDVSFFFADESTLNYSHKYKNILHYV FT VKSYFPASSRIVYFKEFLVTRVNTWFCKFTKVDTYILYKSVRQVGCDSDQFYEAMEDAF FT AYKKTLAMFNTERAIFRDTASVNFWFPKMKDMVIVPLFEGSITSKKMTRSEVIVNRDFV FT YTVLNHIRTYQAKALTYQNVLSFVESIRSRVIINGVTARSEWDVDKAILQPLSMTFFLQ FT TKLAALQDDIVMGKFRCLDKTTSELIWDEVGKFFGNVFPTIKERLVSRKILDVSENALK FT IKIPDLYVTWKDRFVAEYTKSEELPHLDIKKDLEEAEQMYDALSELSILKGADNFDIAK FT FKDMCKALDVSPDVAARVIVAVAENRSGLTLTFDKPTEENVAKALKSTASEAVVCLEPT FT SEEVNVNKFSIAEKGRLPVCAESHGLTNANLEHQELESLNDFHKACVDSVITKQMASVV FT YTGSLKVQQMKNYVDSLAASLSATVSNLCKSLKDEVGYDSDSREKVGVWDVTLKKWLLK FT PAAKGHSWGVVLDYKGKMFTALLSYEGDRMVTESDWRRVAVSSDTMVYSDIAKLQNLRK FT TMRDGEPHEPTAKMVLVDGVPGCGKYKGDFERFDLDEDLILVPGKQAAAMIRRRANSSG FT LIRATMDNVRTVDSLLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQ FT QIPFINRVQNFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQSKYEGAVTTTSTVQRS FT VSSEMIGGKGVLNSVSKPLKGKIVTFTQADKFELEEKGYKNVNTVHEIQGETFEDVSLV FT RLTATPLTLISKSSPHVLVALTRHTKSFKYYTVVLDPLVQIISDLSSLSSFLLEMYMVE FT AGSRXQLQMDAVFKGHNLFVATPKSGDFPDLQFYYDVCLPGNSTILNKYDAVTMRLRDN FT SLNVKDCVLDFSKSIPMPKEVKPCLEPVLRTAAEPPRAAGLLENLVAMIKRNFNAPDLT FT GTIDIESTASVVVDKFFDSYFIKKEKYTKNIAGVMTKDSMMRWLENRKEVLLDDLANYN FT FTDLPAIDQYKHMIKAQPKQKLDLSIQNEYPALQTIVYHSKQINGILAGFSELTRLLLE FT AFDSKKFLFFTRKTPEQIQEFFSDLDSHVPMDVLELDISKYDKSQNEFHCAVEYEIWKR FT LGLNEFLAEVWKQGHRKTTLKDYIAGIKTCLWYQRKSGDVTTFIGNTVIIAACLGSMLP FT MEKVIKGAFCGDDSVLYFPKGLDFPDIQSCANLMWNFEAKLYRKRYGYFCGRYIIHHDK FT GAIVYYDPLKLISKLGAKHIKDYDHLEELRVSLCDVACSLGNWCLGFPQLNAAIKEVHK FT TAIDGSFAFNCVNKFLCDKFLFRTLFLNGC" FT CDS 71..3406 FT /codon_start=1 FT /product="126 kDa protein" FT /db_xref="GOA:P18339" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/Swiss-Prot:P18339" FT /protein_id="AAA47935.1" FT /translation="MAHIQSIISNALLESVSGKNTLVNDLARRRMYDTAVEEFNARDRR FT PKVNFSKTISEEQTLLVSNAYPEFQITFYNTQNAVHSLAGGLRALELEYLMLQVPYGSP FT TYDIGGNFAAHLFKGRDYVHCCMPNLDIRDIMRHEGQKDSIEMYLSRLSRSNKVIPEFQ FT REAFNRYAEAPNEVCCSKTFQDCRIHPPENSGRRYAVALHSLYDIPVHEFGAALISKNI FT HVCYAASILAEALLLDQTEVTLNEIGATFKREGDDVSFFFADESTLNYSHKYKNILHYV FT VKSYFPASSRIVYFKEFLVTRVNTWFCKFTKVDTYILYKSVRQVGCDSDQFYEAMEDAF FT AYKKTLAMFNTERAIFRDTASVNFWFPKMKDMVIVPLFEGSITSKKMTRSEVIVNRDFV FT YTVLNHIRTYQAKALTYQNVLSFVESIRSRVIINGVTARSEWDVDKAILQPLSMTFFLQ FT TKLAALQDDIVMGKFRCLDKTTSELIWDEVGKFFGNVFPTIKERLVSRKILDVSENALK FT IKIPDLYVTWKDRFVAEYTKSEELPHLDIKKDLEEAEQMYDALSELSILKGADNFDIAK FT FKDMCKALDVSPDVAARVIVAVAENRSGLTLTFDKPTEENVAKALKSTASEAVVCLEPT FT SEEVNVNKFSIAEKGRLPVCAESHGLTNANLEHQELESLNDFHKACVDSVITKQMASVV FT YTGSLKVQQMKNYVDSLAASLSATVSNLCKSLKDEVGYDSDSREKVGVWDVTLKKWLLK FT PAAKGHSWGVVLDYKGKMFTALLSYEGDRMVTESDWRRVAVSSDTMVYSDIAKLQNLRK FT TMRDGEPHEPTAKMVLVDGVPGCGKYKGDFERFDLDEDLILVPGKQAAAMIRRRANSSG FT LIRATMDNVRTVDSLLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQ FT QIPFINRVQNFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQSKYEGAVTTTSTVQRS FT VSSEMIGGKGVLNSVSKPLKGKIVTFTQADKFELEEKGYKNVNTVHEIQGETFEDVSLV FT RLTATPLTLISKSSPHVLVALTRHTKSFKYYTVVLDPLVQIISDLSSLSSFLLEMYMVE FT AGSR" FT CDS 4890..5660 FT /codon_start=1 FT /product="28.5 kDa protein" FT /db_xref="GOA:P18338" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/Swiss-Prot:P18338" FT /protein_id="AAA47936.1" FT /translation="MAVSLRDTVKISEFIDLSKQDEILPAFMTKVKSVRISTVDKIMAV FT KNDSLSDVDLLKGVKLVKKGYVCLADLVVSGEWNLPDNCRGGVSVCIVDKRMKRSKEAT FT LGAYHAPACKKNFSFKLIPNYSITSEDAEKHPWQVLVNIKGVAMEEGYCPLSLEFVSIC FT VVHKNNVRKGLRERILSVTDGSPIELTEKVVEEFVDEVPMAVKLEKVPENKKEMVGNNV FT NNKKINNSGKKGFKIEEIEDNVSDDESIASSSTF" FT CDS 5666..6145 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:P03579" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="PDB:1VTM" FT /db_xref="UniProtKB/Swiss-Prot:P03579" FT /protein_id="AAA47937.1" FT /translation="MPYTINSPSQFVYLSSAYADPVQLINLCTNALGNQFQTQQARTTV FT QQQFADAWKPVPSMTVRFPASDFYVYRYNSTLDPLITALLNSFDTRNRIIEVDNQPAPN FT TTEIVNATQRVDDATVAIRASINNLANELVRGTGMFNQAGFETASGLVWTTTPAT" XX SQ Sequence 6355 BP; 1933 A; 1112 C; 1489 G; 1821 T; 0 other; gatgttttaa tagttttcga caacaacaat taaaacaaaa acaacatatt acaaacaaca 60 aacaacaaca atggcacaca tacaatctat aattagcaac gcccttcttg aaagcgtgag 120 tggtaaaaac actctcgtta atgaccttgc aagaaggcgc atgtacgata cggccgtgga 180 agaatttaac gcccgcgacc gtagaccaaa ggtcaacttt tccaaaacta ttagcgaaga 240 gcaaacgctt ctagtctcca acgcgtaccc ggagttccag attacctttt ataatactca 300 aaatgccgta cacagtttgg ctggaggttt gagagcatta gaattggaat atctgatgct 360 acaagttccc tatggatcgc cgacatatga tataggtggg aactttgcag cacatttgtt 420 caaaggcagg gattacgtgc attgctgtat gcccaatctg gacatacgag atataatgag 480 gcacgaagga caaaaggact caattgagat gtatttgtcc agattgtctc gttctaacaa 540 ggtaattcct gagtttcaaa gggaggcttt taacaggtat gcagaagctc ccaacgaagt 600 ctgctgctct aaaacttttc aggattgtcg aatacatccg ccagagaata gtggtagaag 660 atacgctgtt gctctgcaca gtttgtatga tattcctgtg catgagtttg gagctgcgtt 720 aatatctaag aatatacatg tatgttatgc agcttccatt ttggcagaag cattattact 780 agaccagacg gaggttacgc ttaatgaaat aggcgcaact ttcaaaagag aaggtgatga 840 tgtttctttt ttctttgctg atgaaagtac tttaaattat agtcataaat acaaaaatat 900 cttgcattat gtagttaaat cttactttcc tgcttctagt agaatagttt actttaagga 960 atttttagtc actagggtta atacttggtt ttgtaaattt accaaagtag atacctatat 1020 tctgtacaag agtgttagac aagtagggtg tgatagtgat cagttctatg aggcgatgga 1080 agacgccttt gcttacaaga aaaccttggc catgttcaac actgaaagag caatctttag 1140 agacacggct tcggttaact tttggttccc taagatgaag gacatggtga tagtaccgct 1200 gtttgagggt tctattacca gcaaaaagat gacaaggagt gaggtcattg ttaatcgtga 1260 cttcgtttac acagtgctta atcatatcag aacatatcaa gccaaagcgt taacttacca 1320 gaacgtatta tctttcgtgg agtctataag atcccgcgtg ataatcaatg gtgttactgc 1380 taggtctgaa tgggatgtag ataaagcaat tcttcaaccc ttgtcaatga ctttcttctt 1440 gcagactaag ctggctgcgc ttcaagacga tatagtaatg ggaaagtttc ggtgcttgga 1500 taagaccact tctgaactta tttgggatga ggtgggcaaa ttttttggaa acgttttccc 1560 cactatcaaa gagagattgg tgagcaggaa aattctggat gtaagtgaga atgctctgaa 1620 gatcaagatc ccagatctgt atgtcacatg gaaagacagg ttcgtagctg aatacaccaa 1680 gtctgaggag ttaccgcatc tagatatcaa gaaggactta gaagaagctg agcaaatgta 1740 cgacgcgtta tcagaattat ctatccttaa gggtgctgat aatttcgata tcgcgaagtt 1800 caaagacatg tgcaaggctt tagatgttag tcctgatgtg gcagcacgag taatcgttgc 1860 agtggccgag aatagaagcg gtttaactct tacttttgat aagccaaccg aggagaatgt 1920 ggctaaggct cttaaaagca cggcgtctga ggccgtggta tgtcttgaac cgacatccga 1980 agaggtgaac gtaaataaat tttctattgc tgagaaaggg agattgcctg tgtgtgcaga 2040 aagtcatggt ttgacgaatg ctaacttaga gcaccaggag ttggagtccc tcaacgattt 2100 ccataaggct tgcgtggata gtgtgattac aaagcaaatg gcatcggttg tctacactgg 2160 ctcactcaaa gttcaacaaa tgaagaacta tgtggacagt ttggcagctt cgttgtccgc 2220 cactgtatca aatctatgca agtcactaaa ggatgaagtc gggtatgatt ctgattccag 2280 ggagaaagtt ggtgtttggg atgtcacttt gaaaaagtgg ctcctcaaac ctgcggccaa 2340 aggtcattca tggggagttg tcctggatta caaggggaaa atgtttactg cacttctatc 2400 ttatgaagga gatagaatgg tgactgagag cgactggagg agggtggctg tatcatctga 2460 tacaatggta tattctgata ttgcaaagct ccaaaatctg aggaaaacaa tgagagacgg 2520 tgaaccccac gaacctactg caaagatggt acttgtggat ggggtgcctg gttgtggaaa 2580 gtacaaagga gattttgaaa gatttgatct tgatgaggat ttgatcttgg ttcctggaaa 2640 acaagctgct gctatgatca gaagaagggc taattcatct ggactgataa gagccacaat 2700 ggacaatgtg agaacggtag attcacttct aatgcatcca aaaccgcgat cacacaagag 2760 gctttttatt gatgaagggt tgatgctgca caccggttgt gttaacttcc tggtgcttat 2820 ctctggttgc gacatcgcat acatttacgg agatacacag cagattcctt tcattaacag 2880 agttcagaat ttcccgtatc ccaaacattt tgagaagctg caagtggatg aagttgagat 2940 gaggaggacc acactgagat gcccaggtga tgtgaatttt ttcctacaat cgaagtacga 3000 aggagcggtg acaaccactt caactgtaca acgatcggtc tcatctgaga tgataggcgg 3060 taagggagta ctaaacagtg tttccaaacc actaaaaggg aaaattgtaa ctttcactca 3120 ggctgataaa tttgagttag aggagaaggg ctataagaat gtgaacaccg ttcatgagat 3180 ccaaggagaa acctttgaag atgtgtcgct ggtcagattg acggcaactc cactgactct 3240 gatttccaag tcttccccgc atgttctagt cgctctgact agacacacaa agagcttcaa 3300 atattacacc gtagtgttag atcctttagt acagataatt agtgatttgt cttctttaag 3360 ctccttcctt ttagaaatgt atatggtaga agcaggtagt agatagcaat tacagatgga 3420 tgcagtgttc aaaggtcata atctctttgt ggcaacacct aaatcaggag actttccaga 3480 tctacagttc tattacgatg tatgcctccc tggtaatagt actatactta acaagtatga 3540 tgctgttacc atgaggttac gtgataatag tcttaatgtg aaggattgtg ttcttgattt 3600 ttccaaaagt attccgatgc caaaggaggt gaaaccatgt ctagagccag ttttgcgtac 3660 cgcggcggaa ccgccaaggg ctgcaggact actcgaaaat ctggttgcaa tgattaaaag 3720 aaatttcaac gcaccagacc tgacggggac gattgacatt gagagcaccg catctgttgt 3780 agtagataag ttttttgata gctattttat taaaaaagaa aaatacacaa aaaatattgc 3840 tggagtgatg acgaaggatt caatgatgag atggttggaa aacaggaaag aagtactatt 3900 ggacgacttg gctaactaca attttacaga tctgccggcc atcgatcagt acaagcacat 3960 gatcaaggct caaccaaaac agaaattgga cctttcaatt cagaatgaat accctgctct 4020 gcaaacaatt gtctaccatt cgaagcagat caacggtatt ttggccggtt tctcagagct 4080 tacaaggttg ctgctcgagg catttgattc taagaagttt cttttcttta ctaggaaaac 4140 tccagaacag attcaagaat ttttctcgga tctcgactcg cacgttccta tggatgtgtt 4200 agaactggat atttctaagt atgataagtc acagaacgag tttcattgtg ctgtagagta 4260 tgaaatatgg aaaagattgg gtctcaatga gtttttggcc gaagtgtgga aacaagggca 4320 caggaaaaca actttgaagg attacattgc tggaatcaag acatgtctgt ggtatcaaag 4380 gaaaagcggt gatgtgacta ctttcatcgg caatactgtt ataatagcag cttgcttggg 4440 ttcaatgtta ccgatggaaa aggtcataaa aggtgctttt tgtggagacg attccgtttt 4500 gtattttcca aagggtttgg atttccctga cattcagtca tgtgctaatc tcatgtggaa 4560 ttttgaggcc aaactgtata gaaagaggta cggttacttt tgtggtagat acatcataca 4620 ccatgataag ggagcaatag tgtattatga tcctttgaag ttgatctcca aacttggggc 4680 aaaacatatc aaggattatg atcacttaga agagttaagg gtgtctttgt gcgatgttgc 4740 ttgttcgctc ggaaactggt gcttaggctt tccgcagctg aacgcagcta tcaaggaggt 4800 tcataaaacc gcgattgatg gttcgtttgc ttttaattgt gttaacaaat ttttgtgtga 4860 taaattttta tttagaactt tgtttttaaa tggctgttag tctcagagat actgtcaaaa 4920 ttagcgagtt cattgatctt tcgaaacagg atgagatact tccggcattc atgactaagg 4980 tcaagagtgt tagaatatcg actgtggaca agattatggc tgttaagaat gatagtcttt 5040 ctgatgtaga tttacttaaa ggtgttaagt tagttaagaa agggtatgtg tgcttagctg 5100 atttggtagt gtctggggag tggaatctcc cggataactg ccgtggtggt gtcagtgttt 5160 gtattgtaga taagagaatg aaaaggagta aggaagcaac gctgggtgcg tatcacgccc 5220 ctgcttgcaa aaagaatttt tcttttaagc taatccctaa ttattcaata acatccgagg 5280 atgctgagaa gcacccgtgg caagtgttag tgaatatcaa aggagtggct atggaagaag 5340 gatactgtcc tttatctttg gagttcgttt caatttgtgt agtacataaa aataatgtaa 5400 gaaaaggttt gagggaacgt attttgagtg tgacagacgg ctcgccaatt gaactcactg 5460 aaaaggttgt tgaggagttc gtggatgaag taccaatggc tgtgaaactc gaaaaggttc 5520 cggaaaacaa aaaagaaatg gtaggtaata atgttaataa taagaaaata aataacagtg 5580 gtaagaaggg ttttaaaatt gaggaaattg aggataatgt aagtgatgac gagtctatcg 5640 cgtcatcgag tacgttttaa tcaatatgcc ttatacaatc aactctccga gccaatttgt 5700 ttacttatct tccgcttacg cagatcctgt gcagctgatc aatctgtgta caaatgcatt 5760 gggtaaccag tttcaaacgc aacaagctag gacaacagtc caacagcaat ttgcggatgc 5820 ctggaaacct gtgcctagta tgacagtgag atttcctgca tcggatttct atgtgtatag 5880 atataattcg acgcttgatc cgttgatcac ggcgttatta aatagctttg atactagaaa 5940 tagaataata gaggttgata atcaacccgc accgaatact actgaaatcg ttaacgcgac 6000 tcagagggta gacgatgcta ctgtagctat aagggcttca atcaataatt tggctaatga 6060 actggttcgt ggaactggca tgttcaatca agcaggcttt gagactgcta gtggacttgt 6120 ctggaccaca actccggcta cttagctatt gttgtgagat ttcctaaaat aaagtcgctg 6180 aagacttaaa attcagggtg gctgatacca aaatcagcag tggttgttcg tccacttaaa 6240 tataacgatt gtcatatctg gatccaacag ttaaaccatg tgatggtgta tactgtggta 6300 tggcgtaaaa catcggagag gttcgaatcc tcccctaacc gccggtagcg gccca 6355 //