ID M33002; SV 1; linear; genomic RNA; STD; VRL; 3684 BP. XX AC M33002; XX DT 23-JUL-1990 (Rel. 24, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 10) XX DE Tobacco necrosis virus RNA dependent RNA polymerase and coat protein genes, DE complete cds. XX KW . XX OS Tobacco necrosis virus A OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphanecrovirus. XX RN [1] RP 1-3684 RX DOI; 10.1016/0042-6822(90)90536-Z. RX PUBMED; 2371773. RA Meulewaeter F., Seurinck J., Van Emmelo J.; RT "Genome structure of tobacco necrosis virus strain A"; RL Virology 177(2):699-709(1990). XX RN [2] RP 3661-3684 RA Meulewaeter F.; RT ; RL Submitted (16-JAN-1996) to the INSDC. RL Frank Meulewaeter, Plant Genetic Systems N.V., Gent, Belgium XX RN [3] RP 1-3660 RA Meulewaeter F.; RT ; RL Submitted (20-MAR-1990) to the INSDC. RL Frank Meulewaeter, Plant Genetic Systems N.V., Gent, Belgium XX DR MD5; 9918c30ff4281972aa0aebcd2634a33f. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC1421387; 16524473. XX CC On Jan 31, 1996 this sequence version replaced gi:310914. XX FH Key Location/Qualifiers FH FT source 1..3684 FT /organism="Tobacco necrosis virus A" FT /isolate="TNV-A-FM1B" FT /mol_type="genomic RNA" FT /clone="pFM2[0,1,2,3]" FT /db_xref="taxon:12055" FT CDS 60..2234 FT /codon_start=1 FT /transl_except=(pos:666..668,aa:OTHER) FT /product="RNA-dependent RNA polymerase" FT /note="putative; readthrough stop codon" FT /db_xref="GOA:P22958" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/Swiss-Prot:P22958" FT /protein_id="AAA86434.2" FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQKDLLAI FT EDSEHLDDINECFEESAGAQSQRTKVVADGAYAPAKSNRTRRVRKQKKHKFVKYLVNEA FT RAEFGLPKPTEANRLMVQHFLLRVCKDWGVVTAHVHGNVALALPLVFIPTEDDLLSRAL FT MNTHATRAAVRGMDNVQGEGWWNNRLGIGGQVGLAFRSKXGCLERRPGFSTSVSRGEHP FT DLVVIPSGRPEKQRQLLRYSGIGGHLLIGIHNNSLSNLRRGLMERVFYVEGPNGLQDAP FT KPVKGAFRTLDKFRDLYTKNSWRHTPVTSEQFLMNYTGRKLTIYREAVDSLSHQPLSSR FT DAKLKTFVKAEKLNLSKKPDPAPRVIQPRSPRYNVCLGRYLRHYEHHAFKTIAKCFGEI FT TVFKGFTLEQQGEIMRSKWNKYVNPVAVGLDASRFDQHVSVEALEYEHEFYLRDYPNDK FT QLKWLLKQQLCNVGTAFASDGIIKYKKKGCRMSGDMNTSLGNCILMCAMVYGLKEHLNI FT NLSLANNGDDCVIVCEKADLKKLTSSIEPYFKQFGFKMEVEKPVDIFERIEFCQTQPVF FT DGSQYIMVRKPSVVTSKDVTSLIPCQTKAQYAEWLQAVGECGMSINGGIPVMQNFYQKL FT QTGIRRTKFTKTGEFQTNGLGYHSRYMHRVARVPSPETRLSFYLAFGITPDLQEALEIF FT YDTHKLELDDVIPTDTYQVSGEHLINGLPN" FT CDS 2218..2436 FT /codon_start=1 FT /product="unknown" FT /note="ORF 3" FT /db_xref="GOA:P22960" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/Swiss-Prot:P22960" FT /protein_id="AAA86435.1" FT /translation="MDYQTDVTEDNVQIRGRARSVEGKKHNGSGLTGVKRHAVSETSQK FT SQQGTGNGTMTNIAEEQTITVTYNFNF" FT CDS 2440..2610 FT /codon_start=1 FT /product="unknown" FT /note="ORF 4" FT /db_xref="GOA:P22961" FT /db_xref="UniProtKB/Swiss-Prot:P22961" FT /protein_id="AAA86436.1" FT /translation="MAACRCCDTSPGITLFPYFAILILILAILVVGTPNQQYHHSPSTY FT EYKTQHISIAK" FT CDS 2613..3443 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:P22959" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P22959" FT /protein_id="AAA86437.1" FT /translation="MAGKKNNNNGQYIILRTPEQQVEIDQRNARRAQMGRMKKARQPVQ FT RYLQQHGLRNGLSGRGGYIVAPTSGGVVTRPIVPKFSNRGDSTIVRNTEILNNQILAAL FT GAFNTTNSALIAAAPSWLASIADLYSKYRWLSCEIIYIPKCPTTTSGSIAMAFTYDRND FT AAPTARAQLSQSYKAINFPPYAGYDGAAYLNSNQGAGSAIAVQLDVTKLDKPWYPTISS FT AGFGALSVLDQNQFCPASLVVASDGGPATATPAGDLFIKYVIEFIEPINPTMNV" FT CDS 3467..3646 FT /codon_start=1 FT /product="unknown" FT /note="ORF 6" FT /db_xref="UniProtKB/Swiss-Prot:P22962" FT /protein_id="AAA86438.1" FT /translation="MPKVESHHWRRRRILGNRLDGRGVVPPTTHHSGYQWYTTMAGSAK FT VLCTKNPWKRGGGG" XX SQ Sequence 3684 BP; 1037 A; 900 C; 901 G; 846 T; 0 other; agtattcata ccaagaatac caaataggtg caaggcctta ctcagctaaa gagtctaaaa 60 tggagctacc aaaccaacac aagcaaacgg ccgccgaggg tttcgtatct ttcctaaact 120 ggctatgcaa cccatggaga cgacagcgaa cagtcaacgc tgcagttgcg ttccaaaaag 180 atcttctcgc cattgaggat tccgagcatt tggatgacat caatgagtgt ttcgaggagt 240 ctgctggggc acaatctcag cgaactaagg ttgtcgccga cggagcatat gcccccgcaa 300 aatccaacag gacccgccga gttcgtaagc agaagaagca caagtttgta aaatatcttg 360 tcaacgaagc tcgtgccgag tttggattgc ccaaaccaac tgaggcaaac agacttatgg 420 tccaacattt cttgctcaga gtgtgcaagg attggggcgt tgttactgcc cacgtacacg 480 gcaatgttgc actagctttg ccactggtgt tcatcccaac ggaagatgat ctgctatcac 540 gagcattgat gaacacacat gctactagag ccgctgtacg aggcatggac aatgtccaag 600 gggaggggtg gtggaacaat aggttgggga ttgggggcca ggtcggactg gccttccggt 660 ccaaataggg gtgccttgaa aggaggccag gattctccac gtccgtttcg cgtggggaac 720 atcctgatct ggtggtcata ccatcagggc gccctgagaa acagcgtcag ttgttacgct 780 atagtggtat aggcggccat ttattaatcg gcatccacaa caactctctt tccaacctgc 840 gtaggggctt gatggaaaga gtattctatg tcgaggggcc caatgggctt caagacgccc 900 ctaagcccgt caagggagct tttcgaaccc ttgataagtt tcgtgatctc tatactaaaa 960 atagttggcg tcatacccct gtaactagtg aacaattcct aatgaattac acgggcagga 1020 aactgactat ttacagagag gcggttgata gtttgtcgca tcaacccctt agctcacgag 1080 atgcgaaact aaagacattc gtgaaggccg aaaaattaaa tctttctaag aagcctgacc 1140 ctgctcccag ggtcatccaa cctagatcgc ctcggtataa cgtttgtttg ggcaggtacc 1200 tccgacatta tgagcatcac gcgtttaaaa ccattgccaa gtgctttggg gaaatcacgg 1260 tcttcaaagg gtttactctg gagcaacaag gggaaatcat gcgctcgaag tggaataaat 1320 atgttaatcc cgtcgcagtc ggactcgacg ccagtcgttt cgaccaacac gtgtctgttg 1380 aagcactcga gtatgagcat gaattttacc tcagagacta cccaaatgat aaacagctaa 1440 aatggctgct aaagcagcaa ttgtgcaacg taggaacggc attcgccagt gacggcatta 1500 taaaatacaa gaagaagggt tgtagaatga gcggagacat gaacacgagc ttgggcaact 1560 gcattctaat gtgcgccatg gtctacgggt tgaaagaaca cttaaacatc aatttgtccc 1620 ttgcaaataa tggggatgac tgcgtcattg tctgtgagaa agcggattta aagaaattga 1680 caagcagcat cgagccatat ttcaagcagt ttggattcaa gatggaagtg gaaaaacccg 1740 tggatatatt tgagcgcata gaattttgcc aaacccaacc tgtgttcgat ggatcccagt 1800 acatcatggt acgcaaacct tctgtggtaa catctaaaga cgtcactagc cttatcccat 1860 gtcaaacgaa agcacaatac gcagaatggc tgcaagctgt aggtgagtgt ggcatgagca 1920 ttaacggtgg gattcctgtc atgcagaatt tctaccaaaa gctccaaact ggcatccgcc 1980 gcacaaaatt caccaagacc ggcgagttcc agacgaacgg attggggtat cactctagat 2040 atatgcatag agtggcccgg gttccttcgc ctgaaacccg tttatccttc tatctagctt 2100 tcggtatcac accagacctc caagaagcat tggagatctt ctatgatacc cacaagcttg 2160 agttggatga tgttatccca actgatacct accaagtgtc aggagagcat ttgatcaatg 2220 gattaccaaa ctgatgtaac ggaggacaat gtgcaaatac gcggtcgggc taggagcgtt 2280 gagggtaaga aacacaatgg ttcgggatta actggcgtta agcgtcacgc ggtgagcgaa 2340 acatctcaga aatcacagca aggtactggc aatggaacta tgaccaatat agccgaagaa 2400 cagaccatta ccgtgacata caactttaac ttttaagtta tggctgcgtg tcgctgttgt 2460 gatacttcac caggtattac actattccct tactttgcaa ttctcatcct tatattggca 2520 atacttgttg tagggactcc caatcaacaa tatcaccatt ctccaagcac ttacgagtac 2580 aagactcaac acatttcgat cgcaaaatag acatggcagg aaagaagaac aacaacaacg 2640 gtcagtatat aatactgcgt actccagagc aacaggtgga gatagaccag cgcaacgccc 2700 gtcgtgctca aatgggtcgc atgaagaagg ctagacagcc cgttcagcga tacttacagc 2760 aacacgggtt gcgaaacgga ttgtccggta gagggggcta catagtggct cccacctccg 2820 ggggggttgt cactcgaccc atagtgccga aattctccaa caggggagat tccactatag 2880 tccgtaacac tgagattttg aacaaccaaa tcttagcggc gctaggcgca ttcaatacaa 2940 caaactccgc actgattgca gcagcaccat catggctggc tagcatcgct gatctttaca 3000 gtaaatacag atggctctca tgtgagatca tctacattcc aaaatgcccc accaccacca 3060 gtggatcaat tgccatggct ttcacatacg acagaaatga cgctgcaccc accgcaaggg 3120 ctcagctgtc acaatcttac aaggccatca attttccacc gtatgcggga tacgacggag 3180 cagcatattt gaattcgaac cagggagctg ggtcagccat cgccgttcaa cttgatgtta 3240 ccaagttgga caagccatgg taccccacta tctcctctgc cggcttcggg gcgctcagcg 3300 tcctcgatca gaaccaattc tgccccgcgt cccttgtggt cgctagcgat gggggacccg 3360 ctactgctac tccagcaggg gaccttttca tcaagtacgt gattgagttc attgaaccaa 3420 tcaacccaac aatgaacgtc tagttctttg tactgtaact tggctaatgc ctaaggtgga 3480 gtcacaccat tggagacgga gacggatcct gggaaacagg cttgacgggc ggggggtggt 3540 gcccccgacg acgcatcact ccggatacca atggtacacc actatggcag ggtctgccaa 3600 ggtcttgtgc accaagaacc cctggaaacg ggggggaggg gggtagcaca tatcatccag 3660 attgaggggc ctttgcccca cccc 3684 //