ID M29671; SV 1; linear; genomic RNA; STD; VRL; 4266 BP. XX AC M29671; XX DT 25-FEB-1992 (Rel. 31, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 8) XX DE Melon necrotic spot virus (clones pMNS17A and pMNS01A) p29, replicase DE (p89), p7A, p7B, p14, capsid protein (p42) genes, complete genome. XX KW capsid protein; complete genome; replicase. XX OS Melon necrotic spot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Gammacarmovirus. XX RN [1] RX PUBMED; 2584953. RA Riviere C.J., Pot J., Tremaine J.H., Rochon D.M.; RT "Coat protein of melon necrotic spot carmovirus is more similar to those of RT tombusviruses than those of carmoviruses"; RL J. Gen. Virol. 70(Pt 11):3033-3042(1989). XX RN [2] RP 1-4266 RX PUBMED; 2212985. RA Riviere C.J., Rochon D.M.; RT "Nucleotide sequence and genomic organization of melon necrotic spot RT virus"; RL J. Gen. Virol. 71(Pt 9):1887-1896(1990). XX DR MD5; 6c089dbfad805d26b2245935a9536b5e. DR EuropePMC; PMC1421387; 16524473. DR EuropePMC; PMC5712577; 29238357. DR EuropePMC; PMC5954562; 29868081. XX CC Draft entry and computer-readable [or printed] sequence for [J. CC Gen. Virol. (1989) In press] CC kindly submitted by D.A.M.Rochon, 26-OCT-1989. XX FH Key Location/Qualifiers FH FT source 1..4266 FT /organism="Melon necrotic spot virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:11987" FT CDS 88..2463 FT /codon_start=1 FT /transl_except=(pos:892..894,aa:OTHER) FT /gene="p89" FT /product="replicase" FT /note="putative replicase; internal stop codon" FT /db_xref="GOA:Q83424" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q83424" FT /protein_id="AAB02430.1" FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW FT TSAISHDCSKIAKVAAIVGIGYLGVRIGAAWCRRTPGITNSIITYGEEVVEQVKVDIDE FT DAEEESDIGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSIAVPLVLSPDMYDISSKALLNSEILTENR FT ATLDRLKTLDGWLTHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS FT VRRGTHPDMTEFPQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLVERVFFVEND FT KKELEPAPKPLSGAFDRLTWFRRKLHSIVGTHSSISPGQFLDFYTGRRRTIYEGAVKSL FT EGLSVQRRDAYLKTFVKAEKINTTKKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRG FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSSDALKWEHSVY FT LDAFCHDSYLAELLKWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH FT DFFRSRGIRARLMNNGDDCVVICEKECAAVVKADMVRHWRQFGFQCELECDAEIFEQIE FT FCQMRPVYDGEKYVMVRNPLVSLSKDSYSVGPWNGINHARKWVNAVGLCGLSLTGGIPV FT VQSYYNMMIRNTQSVNSSGILRDVSFASGFRELARLGNRKSGAISEDARFSFYLAFGIT FT PDLQRAMESDYDAHTIEWGFVPQGNPRIQPISWTLNEL" FT CDS 88..894 FT /codon_start=1 FT /gene="p29" FT /product="protein 29" FT /function="unknown" FT /db_xref="UniProtKB/TrEMBL:Q83423" FT /protein_id="AAB02431.1" FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW FT TSAISHDCSKIAKVAAIVGIGYLGVRIGAAWCRRTPGITNSIITYGEEVVEQVKVDIDE FT DAEEESDIGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSIAVPLVLSPDMYDISSKALLNSEILTENR FT ATLDRLKTLDGWLTHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVN" FT variation 2389 FT /gene="p89" FT /note="can be 'a' or 't'" FT CDS 2442..2639 FT /codon_start=1 FT /gene="p7A" FT /product="protein p7A" FT /function="unknown" FT /db_xref="GOA:Q89682" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/Swiss-Prot:Q89682" FT /protein_id="AAB02432.1" FT /translation="MDSQRTVELTNPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG FT VMGASTYIADKIKVTINFNF" FT CDS 2442..2828 FT /codon_start=1 FT /transl_except=(pos:2637..2639,aa:OTHER) FT /gene="p14" FT /product="protein 14" FT /function="unknown" FT /note="internal stop codon" FT /db_xref="GOA:Q83425" FT /db_xref="InterPro:IPR007982" FT /db_xref="InterPro:IPR009575" FT /db_xref="UniProtKB/TrEMBL:Q83425" FT /protein_id="AAB02433.1" FT /translation="MDSQRTVELTNPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG FT VMGASTYIADKIKVTINFNFXCMACCRCDSSPGDYSGALLILFISFVFFYITSLSPQGN FT TYVHHFDSSSVKTQYVGISTNGDG" FT CDS 2643..2828 FT /codon_start=1 FT /gene="p7B" FT /product="protein 7B" FT /function="unknown" FT /db_xref="GOA:Q89846" FT /db_xref="InterPro:IPR009575" FT /db_xref="UniProtKB/Swiss-Prot:Q89846" FT /protein_id="AAB02434.1" FT /translation="MACCRCDSSPGDYSGALLILFISFVFFYITSLSPQGNTYVHHFDS FT SSVKTQYVGISTNGDG" FT CDS 2815..3987 FT /codon_start=1 FT /gene="p42" FT /product="capsid protein" FT /db_xref="GOA:P19899" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:2ZAH" FT /db_xref="UniProtKB/Swiss-Prot:P19899" FT /protein_id="AAB02435.1" FT /translation="MAMVKRINNLPTVKLAKQALPLLANPKLVNKAIDVVPLVVQGGRK FT LSKAAKRLLGAYGGNISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFI FT ASVLPSSDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRITYIPTTGS FT TSTGRVSLLWDRDSQDPLPIDRAAISSYAHSADSAPWAENVLVVPCDNTWRYMNDTNAV FT DRKLVDFGQFLFATYSGAGSTAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSLSEVGST FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGPLTFTGNSKLVGNSLNLT FT SSGASALTFTLNSTGVPNSSDSSFSVGTVVALTRVRMTITRCSPETAYLA" FT variation 4263..4266 FT /note="cttt in wt; cgcct in variant" XX SQ Sequence 4266 BP; 1057 A; 894 C; 1063 G; 1251 T; 1 other; ngattactct agccggatcc ccgactctct tatttcctta agttagttcg tgtattgatt 60 atctgtcttg atcagtatag gttagcaatg gatactggtt tgaaatttct tgtttctggg 120 ggtttagcca cctcatctgt tattaggaaa gtgagtgctg tgagttcatt ggattcgtcc 180 cttccttcat catctatatt atctgccatc catgggtctt ggactagtgc tatcagccac 240 gattgtagta agattgccaa ggttgccgcc atagttggga ttggttatct tggggttagg 300 attggtgccg cttggtgccg ccgtactccc ggaataacga attccataat cacctatggg 360 gaagaagtgg ttgagcaagt gaaggtagat attgatgaag atgctgaaga ggagtccgat 420 attggtgagg aaattgtggt tggtacgata ggtattggta tacacacaaa cgtcaaccct 480 gaagttcgag ctaagcgcag acatagatcg aggccattca tcaagaagat cgtgaattta 540 acgaagaatc acttcggtgg atgccccgac tctagtaaat cgaacgtcat ggctgtaagt 600 aaattcgttt atgaacaatg taaacagcac aattgtcttc cacatcaaac gagattgatc 660 atgagtattg cagttccatt ggtgttaagt cccgacatgt acgacatttc cagcaaagct 720 ctgctaaaca gcgagatatt gacagaaaac agagccacgc tggaccgcct caaaactctc 780 gacgggtggc taacacactt ggtgtgccac ccccttagcg cgaaggcttg gaggcgggca 840 attgacaact tgtgtggtct tccagattgg aaggctttca agttggtcaa ctaggggtgc 900 ctggaggagc tcgctgggtt ctgtacttcg gtacggagag ggacacaccc agacatgacc 960 gagtttcctc aggatcgtcc cattaagaca cgcaaactgt attgtttagg gggagttgga 1020 actagcgtga agttcaacgt gcacaataac tctctagcta accttcggcg cggtctagtt 1080 gagcgcgttt tctttgttga aaatgataag aaggaactgg agcctgcccc taaacctctt 1140 agtggtgcgt ttgatcgctt aacttggttt cgtcggaaac tccatagtat tgtgggtact 1200 cattccagta ttagtccagg tcagttcttg gacttctata ctggcaggag gcgcacgatt 1260 tatgaaggtg ctgtgaaatc gttggagggg ttaagtgttc aacgaaggga tgcctatctg 1320 aaaacgtttg ttaaagcgga gaagattaat accactaaga aacctgaccc agctccgcgg 1380 gttatacaac cgaggaacgt aagatacaac gttgaggttg gtcgttatct acgtaggttt 1440 gagcattacc tctatcgagg aattgacgaa atctggaatg gccccaccat aataaaagga 1500 tacactgtcg agcaaattgg gaaaatcgcc cgtgacgcat gggactcctt cgttagtcct 1560 gtagcaatcg gatttgacat gaaaaggttc gaccaacatg tatcctccga cgctcttaaa 1620 tgggaacata gtgtttatct tgacgctttt tgccacgact catatcttgc agaattgttg 1680 aagtggcaat tagttaataa gggtgttggg tatgctagtg atggaatgat taaatataag 1740 gttgatgggt gccggatgag tggtgacatg aatacagcta tgggtaactg tttgattgcc 1800 tgtgccatca cgcatgattt cttccgtagt cgtggtatca gggcgcgttt gatgaacaat 1860 ggtgatgact gtgtcgtaat atgcgaaaaa gaatgtgccg cggtggttaa agccgacatg 1920 gtaaggcact ggagacaatt cgggtttcaa tgcgaactcg aatgcgatgc agaaatcttc 1980 gagcaaattg agttttgtca aatgcggcct gtgtacgacg gggaaaaata tgtgatggta 2040 cggaatccct tggttagcct atccaaagat tcctactcag tcggcccttg gaatggaatc 2100 aaccatgcac gcaagtgggt caatgcagtt ggcttgtgtg gcttatccct cactggtgga 2160 attcctgttg tccaaagtta ttataatatg atgatccgca acactcagtc cgtgaacagt 2220 tctggcatac ttcgcgatgt cagttttgct agtggatttc gggagttagc gcgattgggt 2280 aacaggaaaa gtggtgccat atctgaagac gcccgtttta gcttttatct cgcatttggc 2340 attactccag atttacaacg tgccatggaa agtgactatg atgctcatac tatagagtgg 2400 ggtttcgtgc cccagggaaa tcctagaata cagccaatct catggactct caacgaactg 2460 tagaattaac taatcctcgg ggaagaagta aagaacgtgg tgacagcggg ggaaaacaga 2520 agaactcaat ggggcgaaag atagccaatg atgctatctc tgaatcgaag caaggagtta 2580 tgggtgccag cacatacatt gctgataaaa ttaaggtgac tattaacttt aatttttagt 2640 gtatggcttg ttgccgttgt gactccagcc ccggggatta ctctggagca ttgcttatat 2700 tatttatctc atttgttttc ttttatatta cctcgcttag cccgcaagga aatacttacg 2760 ttcatcactt cgatagttct tccgttaaaa cacaatacgt tggcatctct acaaatggcg 2820 atggttaaac gcattaataa tttacccaca gtgaagcttg ctaagcaggc tctacccctg 2880 cttgcgaatc ctaaacttgt aaataaagct atagatgtgg ttcctttggt cgtccaaggt 2940 ggtcggaaat tgtccaaggc tgctaagcgg ttgcttggcg cttatggagg caacatttcg 3000 tacactgagg gtgccaaacc gggtgcaata tcagctcctg tcgctattag tcggcgagtg 3060 gctggtatga agcctaggtt tgtcagatct gaaggatctg tgaagatagt tcatagggag 3120 tttattgcct ctgttcttcc ttcgagtgat ctcactgtca ataatggtga tgtcaatatc 3180 ggtaagtata gagtcaatcc tagtaataac gctttattca cctggcttca gggacaagct 3240 caactatatg atatgtacag atttactcgg ctccgtatca cctacattcc tactaccgga 3300 tccacttcca cgggtcgtgt ctctctcctc tgggatagag attctcagga ccccctccct 3360 atagaccgtg ctgccattag ctcttatgct cattccgctg attcagcgcc ttgggctgag 3420 aatgttctag tggtcccatg tgacaatacg tggaggtaca tgaatgatac caatgctgtc 3480 gaccggaagt tggttgattt tgggcagttc ttattcgcta cttattctgg tgctggtagc 3540 accgcccatg gtgatcttta tgttgagtat gctgtagaat ttaaggaccc ccagcctatc 3600 gctgggatgg tatgtatgtt tgatcgcttg gtctctcttt ccgaagttgg atccactatc 3660 aagggtgtca attacattgc tgatcgtgat gtgataacta ctgggggtaa tattggtgtt 3720 aacatcaata ttcccgggac ttatctcgtc acgattgttc ttaatgctac atcgattggt 3780 cccctcacct tcactggtaa ttctaaactt gtaggcaaca gtcttaatct taccagcagt 3840 ggtgcatctg ctcttacgtt cacccttaac tccaccggtg tgcccaacag tagcgattct 3900 tcattctctg tgggtaccgt tgttgccttg actagggtgc gtatgacgat cactcgctgc 3960 tctccagaaa ctgcttacct cgcctaattt gatttactgc actccaaatc cggtctccct 4020 tgttcctacc tgttctcagc ctgatatctg ttctggtgtc ctataggcgt ccttgtcgtg 4080 tgtagtgcgg tctggctaac cgtaatggcg tatcggcttg gatttccgat gatttggctc 4140 cgggatgtac gacatagctg aagatggttg gagtttggtg gaccaccgct agcaaaatac 4200 actctgtgtg gggcgtgcta gtggatagtc atgtatgttt gagatgggtt ataggcccat 4260 cccttt 4266 //