ID M25270; SV 1; linear; genomic RNA; STD; VRL; 4701 BP. XX AC M25270; XX DT 23-NOV-1989 (Rel. 21, Created) DT 19-DEC-2016 (Rel. 131, Last updated, Version 7) XX DE Cucumber necrosis virus, complete genome. XX KW coat protein; complete genome; readthrough protein; replicase. XX OS Cucumber necrosis virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4701 RX DOI; 10.1016/0042-6822(89)90150-5. RX PUBMED; 2705296. RA Rochon D.M., Tremaine J.H.; RT "Complete nucleotide sequence of the cucumber necrosis virus genome"; RL Virology 169(2):251-259(1989). XX RN [2] RX DOI; 10.1016/0042-6822(91)90899-M. RX PUBMED; 2014641. RA Rochon D.M., Johnston J.C.; RT "Infectious transcripts from cloned cucumber necrosis virus cDNA: evidence RT for a bifunctional subgenomic mRNA"; RL Virology 181(2):656-665(1991). XX DR MD5; 20cebadc116f7e21a132aba420384d01. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC136688; 12438600. DR EuropePMC; PMC1370487; 13130137. DR EuropePMC; PMC4621115; 26269190. DR EuropePMC; PMC4794660; 26719261. DR EuropePMC; PMC516415; 15367615. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00215; Tombus_3_III. DR RFAM; RF00510; Tombus_IRE. XX CC Original source text: Cucumber necrosis virus, cDNA to viral RNA, CC clone pCNV220A. CC Draft entry and computer-readable sequence for [1] kindly submitted CC by D.Rochon, 25-OCT-1989. XX FH Key Location/Qualifiers FH FT source 1..4701 FT /organism="Cucumber necrosis virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12143" FT CDS 152..2608 FT /codon_start=1 FT /transl_except=(pos:1040..1042,aa:OTHER) FT /note="replicase (put.; readthrough protein); putative" FT /db_xref="GOA:P15187" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/Swiss-Prot:P15187" FT /protein_id="AAA42902.2" FT /translation="MDTIKRMLWPKKEIFVGTFATGVERDTSVDIFQLVCRVVLRYMRT FT GKIENNTDSLGNFIVELLKTDCAAKWEWFMKRRRVGDYAKSLAIASIPVIPLLSYATMK FT KTVALRAFGNELSFNIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSDESLGVKXGGLVRLPGVVTQTNRDIPSGVLLPQEVLEVRAGPPNAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGQLTRTPQPTKGAFGRLSPFRKAV FT CEKVGVAHRLGYDGFLSYYSGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTAK FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGQIFRDK FT WDRFNKPVAIGLDASRFDQHCSVEALQFEHGFYRAMYPGNKLLSKLLDWQLHNKGKGYV FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMIYGYMRHLGINEYSLANCGDDCVLIVER FT RNLKQIQGTLPEYFLNLGYTMKVEPPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK FT DVHCVNNIRDLATRRAWSNAQHHGGVALTSGIPVVEKFYSRFTLYEVPKKHQRIDTVTN FT VHKWRGSGGDYVVTPEARASFWAAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSI FT LDSAVA" FT CDS 152..1042 FT /codon_start=1 FT /note="ORF p33" FT /db_xref="GOA:Q66164" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q66164" FT /protein_id="AAA42903.1" FT /translation="MDTIKRMLWPKKEIFVGTFATGVERDTSVDIFQLVCRVVLRYMRT FT GKIENNTDSLGNFIVELLKTDCAAKWEWFMKRRRVGDYAKSLAIASIPVIPLLSYATMK FT KTVALRAFGNELSFNIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSDESLGVK" FT exon <152..1039 FT /note="replicase (put.; readthrough protein); putative" FT misc_feature 1040..1042 FT /note="readthrough codon" FT exon 1043..>2608 FT /note="replicase (put.; readthrough protein); putative" FT CDS 2628..3770 FT /codon_start=1 FT /note="coat protein" FT /db_xref="GOA:P15183" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:4LLF" FT /db_xref="UniProtKB/Swiss-Prot:P15183" FT /protein_id="AAA42904.1" FT /translation="MALVSRNNNMRTLAKLAAPLATAGTRTIVDNKEAIWNGVKWIWGK FT LPKGKKGKNGNGALIAHPQAFPGAIAAPISYAYAVKGRKPRFQTAKGSVRITHREYVSV FT LSGTNGEFLRNNGTGPNNDFSINPLNPFLFPWLVNIAANFDQYKFNSLRFEYVPLVNTT FT TNGRVALYFDKDSEDPGPDDRAALANYAHLSEISPWAITKLTVPTDNVKRFISDTSSGD FT PKLINLGQFGWVAYSGPTAELGDIFVEYTVDLFEAQPTSPLLESLFRESASSVQTRMGL FT PYFSLEVASATDLVWQARVPGTYVVTIIFNSTVGGLTPSISGGGTINSSFSVSTAGSSA FT YVANITIRVNANLSLSGLTGATNAQLFAVRAITENAVQVV" FT CDS 3800..4372 FT /codon_start=1 FT /note="ORF p21" FT /db_xref="GOA:P15185" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/Swiss-Prot:P15185" FT /protein_id="AAA42905.1" FT /translation="MDTEYEQVNKPWNELYKEATLGNKLTVNVGMEDVEVPLLPSNFLT FT KVRVSLSGGYITVRRVRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTELLDLGKEI FT RLTMQHLDFSVSARSDVPIVFGFEDLVSPYLEGRELFSVSLRWQFGLSAQCYSLPPAKW FT KVMYQEDALKALKPSKIKKASKTDSSV" FT CDS 3832..4353 FT /codon_start=1 FT /note="ORF p20" FT /db_xref="GOA:P15184" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/Swiss-Prot:P15184" FT /protein_id="AAA42906.1" FT /translation="MERAIQRSDAREQANSERWDGRCGGTITPFKLPDESPSLLEWRLH FT NSEESEDKDHPLGFKESWSFGKVVFKRYLRYDGTETSLHRTLGSWERNSVNDAASRFLG FT VSQIGCTYSIRFRGSCLTLSGGSRTLQRLIEMAIRTKRTMLQLTPCEVEGNVSRRRPQG FT SEAFENKESE" XX SQ Sequence 4701 BP; 1228 A; 1007 C; 1291 G; 1173 T; 2 other; nnaaattctc caggatttct caaccttggt tgtgctatct ggtgacttgc gcgtgttgtc 60 tgcgtagaga atttctctcc ttaaccaaaa ggggtttgaa gactgggtct accgcttgcg 120 ggataaattg taacttccag taaacgacga catggatacc atcaagagga tgctgtggcc 180 taagaaagaa atttttgttg gcacgttcgc gaccggagtg gaaagggaca cctcggtgga 240 catcttccaa ttagtgtgta gggttgtgtt gagatacatg aggacaggga aaatcgagaa 300 taacactgac agtctgggaa atttcatcgt tgaacttctc aagacagatt gtgcagccaa 360 atgggaatgg ttcatgaaac gcaggagggt tggtgattac gccaagtcac tcgccattgc 420 ttccatccca gttattccgt tgcttagcta tgccacgatg aagaagaccg ttgcgcttcg 480 ggcctttggt aatgaactct cgttcaacat cagggttcca aggccatcag tacctaagaa 540 aggcttgcta ctgcgactgg cggcaggact agcgttagca cccatttgcg cactagccat 600 gtacgctacc ctacccaggg aaaaactgtc ggtatttaag cttcgcactg aagcccgagc 660 acatatggag gatgaaaggg aagcgacgga ttgtttggtg gttgagccgg cacgggagct 720 taagggtaag gatggagagg atctcctcac tggcagtagg atgacaaagg taattgcgtc 780 cacaggacgc cctcgcagaa gaccttatgc agctaagatt gcacaggtag cgagagccaa 840 ggtgggttac ctgaagaaca ctcctgagaa tagattgata taccagagag tgatgatcga 900 gatcatggac aaagattgcg tcaggtatgt tgacagggat gtcatattac cattggctat 960 tggatgctgc tttgtctacc cggatggagt ggaggagtcg gccgcacttt ggggctcgga 1020 tgagtccctt ggtgtgaaat agggaggcct agtacgtcta cctggggttg tgacacagac 1080 caatcgagat atcccatctg gtgtgttact tccccaggaa gtgctagagg ttcgtgcagg 1140 acctcccaat gctaaggacc gtaacatatt catggttgcg ggttgcccat cacaggcgcg 1200 gttcttagta cacaatcatt gcctgaaaaa cctgaaaagg ggtcttgtgg agagagtttt 1260 ctgtgtcgag aggaacggtc aactcactcg cactccacaa cctaccaaag gagcctttgg 1320 acgtctttcc ccgttcagga aagcggtctg cgagaaggtc ggggttgccc accgtttggg 1380 gtatgatgga tttctatcat actacagtgg tgcgaagctc cgtacttaca cgcgggctgt 1440 ggagagtctg catatcacac ctgtctctga gagggatagt cacttgacta cctttgtcaa 1500 ggcagagaag atatcgacgg ccaaaggtga cccagcacct agggtgattc agcctcgaaa 1560 ccctaggtac aatgtggagc ttggaagata tctgcggcat atggaatcca aacttatgaa 1620 agctgtggat ggcgtatttg gtgaaaccac atgcattaaa ggttatactg ctgatgaggt 1680 ggggcagatt ttccgggata aatgggatag gtttaataaa cccgtcgcta tcggtctcga 1740 tgcctcacgg tttgatcaac actgttccgt ggaggccttg caatttgagc atggtttcta 1800 cagggccatg taccctggca ataagctttt gagcaagttg ttggactggc aactccataa 1860 caaagggaaa ggttatgtgc ctgacggcac aataacttac cgtaaggagg gttgccgcat 1920 gagtggggat ataaacacgt cacttggtaa ttatctttta atgtgtgcta tgatctacgg 1980 gtatatgcgc catttgggga tcaatgaata cagtctggcg aactgcgggg atgactgcgt 2040 tctcattgtg gagcgtagga atcttaagca gatacagggt acactgcctg agtatttcct 2100 aaatttgggt tatacgatga aggtggaacc acctgtattt caattggaag aggttgaatt 2160 ctgtcaggca cacccagtgc agtttcaagg tggttggaag atggtccgga acgtcagaac 2220 agccatgagc aaggatgttc actgtgttaa taatattagg gatttggcca caaggagggc 2280 gtggagtaat gctcagcatc atggcggggt tgcgcttact agcggtattc ctgttgtgga 2340 gaaattttac tccagattta cactctatga agtccctaag aagcaccagc gcatagacac 2400 agtgacaaat gtgcacaaat ggcgtggttc tggcggtgac tatgttgtga cccctgaggc 2460 aagggcgagc ttttgggctg cctttggact cacgggggat gagcagctgg cactagagga 2520 ccgattggac agatgggaaa tggatctttt tggagaggag ggtgttgacg cgcatgagcc 2580 cagcatcctt gactccgccg tagcatgacc aagcaaacac aaacacaatg gcactcgtaa 2640 gcaggaacaa caatatgcga acacttgcaa agttagccgc cccattggct acggcaggga 2700 cacgcacgat agtggacaat aaagaagcta tctggaatgg agtaaaatgg atctggggaa 2760 agttaccgaa aggcaagaaa ggtaagaatg gaaacggtgc tctcatagcc cacccacagg 2820 cttttcctgg ggctatcgcc gcgccaatct cttatgccta tgcggttaaa ggaaggaaac 2880 ctaggtttca aacagcaaaa ggatctgtgc gaataaccca tagagagtat gtgtcggttc 2940 tttccggcac taatggggag ttcctacgca acaacgggac tggaccgaac aacgatttca 3000 gcattaatcc gctgaaccct ttcttgttcc cgtggcttgt aaatattgcc gccaactttg 3060 atcagtacaa gttcaacagt ttgaggttcg agtatgtacc gcttgttaat acaacgacta 3120 atggccgtgt agctttatat tttgataagg atagcgagga ccctggcccc gatgataggg 3180 ctgcccttgc gaactatgct cacttgagtg agatatctcc ttgggcgata acaaagctta 3240 ccgtgcctac agacaatgtc aagcggttca tcagtgacac ctcgtcgggt gacccgaagc 3300 tgatcaacct tgggcagttt ggatgggtcg cttatagcgg ccctacagct gagttggggg 3360 atattttcgt agagtacaca gtagatctct ttgaggcaca accaacgtcg cctcttctgg 3420 aatcgttgtt ccgggagagc gctagtagtg tgcaaacgag aatgggttta ccttactttt 3480 ccctggaggt ggcttcggct accgaccttg tatggcaggc acgtgtgccc ggcacatatg 3540 tggttaccat tatcttcaac agtacagtcg gggggctcac accgtccatt tctggaggtg 3600 ggactattaa tagttccttt agtgtgagca ccgccggaag ctctgcatat gttgcaaaca 3660 tcactatacg tgtgaatgcc aacttgagtc tttctgggct cacgggagcg acaaacgcgc 3720 agctctttgc ggtgcgagca atcactgaaa atgcggtgca ggttgtgtaa attaggggct 3780 tcttgaatct aaccaattca tggatactga atacgaacaa gtcaataaac catggaacga 3840 gctatacaaa gaagcgacgc tagggaacaa gctaacagtg aacgttggga tggaagatgt 3900 ggaggtacca ttactccctt caaacttcct gacgaaagtc cgagtctcct tgagtggagg 3960 ctacataaca gtgaggagag tgaggataaa gatcatcccc ttggtttcaa ggaaagctgg 4020 agtttcggga aagttgtatt taagagatat ctcagatacg acgggacgga aacttcattg 4080 cacagaactc ttggatcttg ggaaagaaat tcggttaacg atgcagcatc tcgatttctc 4140 ggtgtcagcc agatcggatg tacctatagt attcggtttc gaggatcttg tctcacctta 4200 tctggagggt cgcgaactct tcagcgtctc attgagatgg caattcggac taagcgcaca 4260 atgttacagc ttaccccctg cgaagtggaa ggtaatgtat caagaagacg ccctcaaggc 4320 tctgaagcct tcgaaaataa agaaagcgag taagacagac tcttcagtct gacttggtgg 4380 aatcttgcga atttaactgt tactcttcat gggttccttc ccatacgatg acgagtcagg 4440 tcgggcccta tcttaggttt ggtcacctag gggacgggga tatggaaatc actttcgctt 4500 gctgtcagtc tagtggaaac acttagcttg caatgtgggt gtatgcctgg ataagtcgta 4560 tggatgctgg ccatgatgaa ttggatgcag tttaggacgt atagtggaaa tcttgccaga 4620 cacggttgat ctcaccctcc ggggggctat agagatcgct ggaacactac cggacaaccg 4680 gaacattgca gaaatgcagc c 4701 //