ID M23021; SV 1; linear; genomic RNA; STD; VRL; 4194 BP. XX AC M23021; XX DT 06-JUL-1989 (Rel. 20, Created) DT 06-JUN-2002 (Rel. 72, Last updated, Version 5) XX DE Southern cowpea mosaic virus, complete genome. XX KW . XX OS Southern cowpea mosaic virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4194 RX DOI; 10.1016/0042-6822(87)90172-3. RX PUBMED; 2823471. RA Wu S.X., Rinehart C.A., Kaesberg P.; RT "Sequence and organization of southern bean mosaic virus genomic RNA"; RL Virology 161(1):73-80(1987). XX RN [2] RP 1-4194 RA Wu S.X., Rinehart C.A., Kaesberg P.; RT ; RL Submitted (03-JUL-1989) to the INSDC. RL Biophysics Laboratory, University of Wisconsin, Madison, WI 53706, USA XX DR MD5; ed33918fc155a3fe9f053b7038b69f26. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC3791421; 23830075. XX CC On Jul 21, 1994 this sequence version replaced gi:340788. XX FH Key Location/Qualifiers FH FT source 1..4194 FT /organism="Southern cowpea mosaic virus" FT /mol_type="genomic RNA" FT /note="formerly called Southern bean mosaic virus; ICTV7 FT type organism" FT /db_xref="taxon:196398" FT CDS 49..606 FT /codon_start=1 FT /note="ORF" FT /db_xref="GOA:P21406" FT /db_xref="UniProtKB/Swiss-Prot:P21406" FT /protein_id="AAA46564.1" FT /translation="MIYETLVLSKTELEQLNVDLPRYSYRFRYSRSIGDTVVEFPGTLS FT DPCIPVVDVLLGACWAWPQPSRHGGLGLDDIDPFDASFSCCVTSPERYCLSRSVLSGVD FT AFVVRGSCKLCGLGFLDNFNPFEIRALLGQTTPGLWWQPVKPVYDDRNIHLPYDSELNA FT RIQRFQYTCRECIVRVAFHMSS" FT CDS 570..3440 FT /codon_start=1 FT /note="ORF" FT /db_xref="GOA:P21405" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:P21405" FT /protein_id="AAA46565.1" FT /translation="MYRPSCLSYVLLVANMWSFAVCANAFIYGSYDPSHNIPIVALMTL FT CATGLWLSTSVVSFGIRYVRVRVSPEKTQNRTIYVSSGLPHFDPVYGVVKKCEPMGGGP FT AIELQVNPSWIHLLPTSPAINKVEVGQESAILGSTYSVVETGGEPKSLVAVKSGDSTLG FT FGARVYHEGMDVLMVPHHVWYNDKPHTALAKNGRSVDTEDWEVEAACADPRIDFVLVKV FT PTAVWAKLAVRSTKVLAPVHGTAVQTFGGQDSKQLFSGLGKAKALDNAWEFTHTAPTAK FT GWSGTPLYTRDGIVGMHTGYVDIGTSNRAINMHFIMSCLVSKMETLPPELGYREISLED FT VGLRSFEFLEVEIENRGKVKLGKREFAWVPKGKAWADMLDDDDLPLPPKMVNGNLVWAD FT AQESFDGALPLNCLRAAGRNVLPPKLNLVTINSPVDPPTKQVACPSEIVDHRLASLEKC FT LENLLQTLSQPQQKFSQNSLSSGGLKGDQELKLAPCYSKQESLFPPKPRATSSKPITTS FT SPGTPGRSPLPVSGKELGPSTQSSSKLSRKQRRRRSTEKASPGVPLSRLATTNKDLMAQ FT HMQFVAACVTGRVPLLASFEDIHALSPTEMVEMGLCDPVRLFVKQEPHPSRKLKEGRYR FT LISSVSIVDQLVERMLFGAQNELEIAEWQSIPSKPGMGLSVIHQADAIFRDLRVKHTVC FT PAAEADISGFDWSVQDWELWADVEMRIVLGSFPPMMARAARNRFSCFMNSVLQLSNGQL FT LQQELPGIMKSGSYCTSSTNSRIRCLMAELIGSPWCIAMGDDSVEGFVEGAREKYAGLG FT HLCKDYKPCATTPTGQLYAVEFCSHVIKRNKAFLTSWPKTLYRFLSTPRETLEDLEREL FT ASSPMWHKIQSYVRSIPSPDKTARDKSICNGYPLDQEAISTSYSEYSSKSASAEATREA FT ACCAGAQAYPSWGIHGPYCSGDHGEA" FT CDS 1895..2383 FT /codon_start=1 FT /note="ORF" FT /db_xref="GOA:Q83470" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:Q83470" FT /protein_id="AAA46566.1" FT /translation="MPFRNCGSSTCKFREVSRKPVADAVTAATKVFPELSELGWPERGS FT GAEIGSLLLQAGKFVPTKAPSNLEQAYNNLLSRYPRSKPLACFRQGTWSFDAIFEQVVS FT KATSAEINRKGQSRGPPLPPRHHQQGLNGATHAVRSCLCNWESATPSLLRGYTRSISH" FT CDS 3217..4056 FT /codon_start=1 FT /note="ORF" FT /db_xref="GOA:P03607" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:4SBV" FT /db_xref="UniProtKB/Swiss-Prot:P03607" FT /protein_id="AAA46567.1" FT /translation="MSGLFHHRTKPREIRAFVMATRLTKKQLAQAIQNTLPNPPRRKRR FT AKRRAAQVPKPTQAGVSMAPIAQGTMVKLRPPMLRSSMDVTILSHCELSTELAVTDTIV FT VTSELVMPFTVGTWLRGVAQNWSKYAWVAIRYTYLPSCPTTTSGAIHMGFQYDMADTLP FT VSVNQLSNLKGYVTGPVWEGQSGLCFVNNTKCPDTSRAITIALDTNEVSEKRYPFKTAT FT DYATAVGVNANIGNILVPARLVIAMEGGSSKTAVNTGRLYASYTIRLIEPIAAALNL" XX SQ Sequence 4194 BP; 967 A; 1053 C; 1109 G; 1065 T; 0 other; cacaaaatat aagaaggaaa agtgctgatt ttcctacctt tgtgtttcat gatttatgag 60 acattggttt taagcaaaac tgagttagag caactcaacg tcgatttacc tcgatattcc 120 tacaggtttc gttacagtcg ttcgattggc gatactgtag tagagtttcc tggtactctc 180 tcggacccct gtatccctgt cgttgacgta ctccttggag cttgttgggc ttggcctcaa 240 ccttcacgac acggtggttt ggggttagat gatatcgacc cttttgacgc tagcttctcg 300 tgctgcgtga cctctccgga aaggtactgc ctatcaaggt ctgtattaag cggagttgac 360 gcgtttgttg tccgcggatc ctgcaagttg tgtggattag gatttctcga caatttcaat 420 ccttttgaaa ttcgtgcgtt gcttggtcaa accactcctg gtttgtggtg gcaacccgtc 480 aagccagtct acgacgacag gaacattcac ctcccgtacg actccgagct taacgcgaga 540 atacaacgct tccagtacac ctgccgagaa tgtatcgtcc gagttgcctt tcatatgtcc 600 tcctagttgc gaacatgtgg agcttcgccg tgtgcgcaaa tgcgttcatc tacgggtcat 660 acgaccccag ccacaatatt ccaattgtgg ccttgatgac cctgtgcgct acagggctct 720 ggttgagcac gtccgtggtg tccttcggga ttcgctacgt gagggtgcga gtttcgcctg 780 aaaagacgca gaaccgcacc atatacgtct cctctgggct acctcatttt gaccccgttt 840 atggggttgt taagaagtgt gagcctatgg ggggcggccc agccattgag ctacaggtta 900 acccatcttg gatccatctc ctgcctactt ctcctgcgat aaataaggtt gaagtaggac 960 aggaatcggc cattttgggc agtacctact ctgtagtgga aaccggtgga gagcctaaga 1020 gtttggttgc cgttaagagt ggagacagca cccttgggtt tggagcccgt gtctaccatg 1080 agggcatgga tgtcctcatg gtacctcacc atgtgtggta caatgacaaa ccccatacag 1140 ctttagccaa gaacggtcgt tcggtagaca ctgaagactg ggaggttgag gctgcatgtg 1200 ctgatccacg tattgacttc gtgctagtta aagtccccac tgcggtgtgg gctaagctgg 1260 ctgttaggtc tactaaggtg ttggcaccag tgcatggaac tgcagtccaa acatttggag 1320 ggcaggattc caagcaatta ttctcgggct tgggaaaggc gaaagcctta gacaatgcct 1380 gggaatttac tcacacagct ccaaccgcta aaggatggag cgggactccg ctctatacta 1440 gagatggaat tgtgggtatg cacactggtt acgtcgacat cggcacatca aaccgggcca 1500 tcaacatgca cttcattatg tcctgtttgg tgtccaaaat ggagactctc cccccagagc 1560 ttggctaccg cgagatatcc ctagaggatg tcggactccg tagttttgag tttctagagg 1620 tggagattga gaataggggc aaagtgaagt tgggtaagcg tgaattcgcc tgggtgccta 1680 aagggaaagc ctgggcggac atgcttgacg atgatgattt accccttcct ccaaagatgg 1740 tgaatgggaa tctggtttgg gctgatgctc aagagagctt tgatggagcc cttcctttaa 1800 actgcttgcg ggcggccgga cgcaatgtct tgccgcccaa attgaacttg gtgactataa 1860 attctcctgt ggacccaccc acgaaacagg tggcatgccc ttcagaaatt gtggatcatc 1920 gacttgcaag tttagagaag tgtctcgaaa acctgttgca gacgctgtca cagccgcaac 1980 aaaagttttc ccagaactct ctgagctcgg gtggcctgaa aggggatcag gagctgaaat 2040 tggctccctg ctactccaag caggaaagtt tgttcccacc aaagccccga gcaacctcga 2100 gcaagcctat aacaacctcc tctccaggta ccccaggtcg aagccccttg cctgtttcag 2160 gcaaggaact tggtccttcg acgcaatctt cgagcaagtt gtctcgaaag caacgtcggc 2220 ggagatcaac cgaaaaggcc agtccagggg tccccctctc ccgcctcgcc accaccaaca 2280 aggacttaat ggcgcaacac atgcagttcg tagctgcttg tgtaactggg agagtgccac 2340 tcctagcctc cttcgaggat atacacgctc tatctcccac tgagatggta gagatgggct 2400 tgtgtgaccc ggtgcggctt tttgtcaaac aagagccgca cccgtctcgt aagttgaagg 2460 aagggaggta tcggcttatc tcctcggtct caatcgtcga ccaattggtc gaaagaatgc 2520 tctttggagc tcagaacgag ttagagattg ctgagtggca atctatccct tcaaaacccg 2580 gtatggggct ttccgtcatc caccaagctg acgcgatatt ccgtgacttg cgagtcaaac 2640 ataccgtgtg tcctgcagct gaagcagaca tatctggttt tgattggtcc gttcaggact 2700 gggaattgtg ggctgatgtt gaaatgagaa tcgttttggg ctctttccca cccatgatgg 2760 ctagagctgc taggaacagg ttttcatgct tcatgaactc agtcctgcaa ctctcaaacg 2820 gacagttact ccagcaagag ctgccgggga tcatgaaatc tggatcttat tgcacctcct 2880 ccactaattc gcggatacgt tgccttatgg ctgagcttat tggttcccca tggtgcatcg 2940 ccatgggtga cgactccgtg gagggttttg tggagggggc tagggagaag tatgcggggc 3000 tggggcactt gtgcaaggat tacaagcctt gtgcaaccac ccccacaggc cagttgtatg 3060 ccgtggagtt ctgttcccac gtgattaaac gcaataaggc gtttcttaca tcatggccca 3120 aaactctgta taggttcctt agcacgccga gggagacgct ggaagatctc gagagagagc 3180 ttgcatcctc ccccatgtgg cataagattc agagttatgt ccggtctatt ccatcaccgg 3240 acaaaaccgc gcgagataag agcatttgta atggctaccc gcttgaccaa gaagcaatta 3300 gcacaagcta ttcagaatac tcttccaaat ccgcctcggc ggaagcgacg cgcgaagcgg 3360 cgtgctgcgc aggtgcccaa gcctacccaa gctggggtat ccatggcccc tattgctcag 3420 gggaccatgg tgaagcttag gcctcccatg ctacgctcgt cgatggacgt gaccatcttg 3480 tctcactgtg agctctccac tgagctcgct gtcactgaca cgatagttgt tacgtccgag 3540 ctagtcatgc cgttcactgt gggaacttgg cttcgtggtg tagcacagaa ctggtcgaag 3600 tatgcttggg ttgcgattag gtacacgtac ctaccgtctt gtcccactac tacgtccggc 3660 gccattcata tggggttcca gtacgatatg gctgacaccc ttcccgtgag tgtcaatcag 3720 ctgagtaact tgaaagggta tgttactggt cctgtgtggg agggtcagtc tggcctttgt 3780 tttgttaaca atacaaagtg cccggacacc tcccgagcta ttaccatagc cttggatact 3840 aacgaagtct ctgaaaagag gtaccccttc aagaccgcga ctgactatgc caccgctgtc 3900 ggagtgaatg ccaacattgg caacattctt gtgcccgcta ggttggtgat agcgatggaa 3960 ggaggatcat ctaagactgc tgtgaacact gggaggcttt acgcctcata caccatacgg 4020 ctgattgagc ccatagcggc ggcattaaac ttgtagcgaa gtataaaacg ctttacccct 4080 ggtggttggc gcctaggggc ggactctgca caatagacta tggtttggaa atcttggacc 4140 atctagttat gtttaggaac gatttcccgc tggaaccgag cgctatccga atgg 4194 //