ID M22445; SV 3; linear; genomic RNA; STD; VRL; 4054 BP. XX AC M22445; XX DT 23-NOV-1989 (Rel. 21, Created) DT 18-MAY-2014 (Rel. 120, Last updated, Version 7) XX DE Turnip crinkle virus, complete genome. XX KW . XX OS Turnip crinkle virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betacarmovirus. XX RN [1] RP 1-4054 RX DOI; 10.1016/0042-6822(89)90369-3. RX PUBMED; 2718381. RA Carrington J.C., Heaton L.A., Zuidema D., Hillman B.I., Morris T.J.; RT "The genome structure of turnip crinkle virus"; RL Virology 170(1):219-226(1989). XX RN [2] RP 1-4054 RA Carrington J.C., Heaton L.A., Zuidema D., Hillman B.I., Morris T.J.; RT ; RL Submitted (08-FEB-1989) to the INSDC. RL Department of Plant Pathology, University of California, Berkeley, CA RL 94720, USA XX RN [3] RC Sequence update by submitter RP 1-4054 RA Carrington J.C., Heaton L.A., Zuidema D., Hillman B.I., Morris T.J.; RT ; RL Submitted (15-MAY-2014) to the INSDC. RL Department of Plant Pathology, University of California, Berkeley, CA RL 94720, USA XX DR MD5; e7aedbcc137e5725c950c122c2c378b6. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC1421387; 16524473. DR EuropePMC; PMC416505; 15163703. DR RFAM; RF00500; TCV_H5. DR RFAM; RF00502; TCV_Pr. XX CC On May 15, 2014 this sequence version replaced gi:73696678. XX FH Key Location/Qualifiers FH FT source 1..4054 FT /organism="Turnip crinkle virus" FT /mol_type="genomic RNA" FT /clone="pTCV-[103,129]" FT /db_xref="taxon:11988" FT CDS 64..2391 FT /codon_start=1 FT /transl_except=(pos:814..816,aa:OTHER) FT /product="p88 replicase" FT /db_xref="GOA:P17460" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:P17460" FT /protein_id="AAA96969.3" FT /translation="MPLLHTLNTALAVGLLGARYYPEVQTFLGLPDYVGHMKNVVRSVF FT QGSGLVVVSSDTVGVRGTYSNRGQIGSSLGCILAVPDSGADIEIDLDRLVGTEEEATSC FT LVEAVGSTADVPRRRVRQKGRFAMHAVNAAKLHFCGVPKPTEANRLAVSKWLVQYCKER FT HVVDSHIRTIVNTALPRVFTPDAEDIQVVLDLHSVRAHDHRNALAEAGKVRKWWVNLAM FT HPMTGRSWSRAWRRLCRLPDDQAISFVRXGCLRELVGRETQISRGENPAMRVFPLANPP FT KVRRIFHICGMGNGLDFGVHNNSLNNLRRGLMERVFYVEDAQKQLKPAPQPIPGIFGKL FT SGIRRRLVRLAGNHTPVPREKYPSFYKGRRATIYQKALDSLHDRPVSRKDAELKTFVKA FT EKINFTAKKDPAPRVIQPRDPRYNIEVGKYLKPYEHHLYRAIDAMWGGPTVLKGYDVGE FT LGNIMSNTWDKFRKTCAIGFDMKRFDQHVSVDALRWEHSVYNAGFNCPELAQLLTWQLT FT NKGVGRASDGFIKYQVDGCRMSGDVNTALGNCLLACSITKYLMKGIKCKLINNGDDCVL FT FFEADEVDRVRERLHHWIDFGFQCIAEEPQYELEKVEFCQMSPIFDGEGWVMVRNPRVS FT LSKDSYSTTQWANEKDAARWLAAIGECGLAIAGGVPVLQSYYSCLKRNFGPLAGDYKKK FT MQDVSFDSGFYRLSKNGMRGSKDVSQDARFSFYRGFGYTPDEQEALEEYYDNLELLCEW FT DPTGYKEELSDRWILNEFPTTL" FT CDS 64..816 FT /codon_start=1 FT /product="p28 auxiliary replication protein" FT /db_xref="GOA:P17460" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:P17460" FT /protein_id="AAA96968.2" FT /translation="MPLLHTLNTALAVGLLGARYYPEVQTFLGLPDYVGHMKNVVRSVF FT QGSGLVVVSSDTVGVRGTYSNRGQIGSSLGCILAVPDSGADIEIDLDRLVGTEEEATSC FT LVEAVGSTADVPRRRVRQKGRFAMHAVNAAKLHFCGVPKPTEANRLAVSKWLVQYCKER FT HVVDSHIRTIVNTALPRVFTPDAEDIQVVLDLHSVRAHDHRNALAEAGKVRKWWVNLAM FT HPMTGRSWSRAWRRLCRLPDDQAISFVR" FT CDS 2358..2576 FT /codon_start=1 FT /product="p8 movement protein" FT /db_xref="GOA:P17461" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/Swiss-Prot:P17461" FT /protein_id="AAA96970.1" FT /translation="MDPERIPYNSLSDSDATGKRKKGGEKSAKKRLVASHAASSVLNKK FT RNEGSASHGGTWVIVADKVEVSINFNF" FT CDS 2497..2754 FT /codon_start=1 FT /product="p9 movement protein" FT /db_xref="GOA:Q7TD19" FT /db_xref="UniProtKB/Swiss-Prot:Q7TD19" FT /protein_id="AHZ65050.1" FT /translation="MKVLLVTGVLGLLLLIKWKSQSTSTSNQTCQCPTSPWVIYAFYNS FT LSLVLLLCHLIPEIKPIHTSYNTHDSSKQQHISINTGNGK" FT CDS 2744..3799 FT /codon_start=1 FT /product="p38 capsid protein" FT /db_xref="GOA:P06663" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:3ZX8" FT /db_xref="PDB:3ZX9" FT /db_xref="PDB:3ZXA" FT /db_xref="UniProtKB/Swiss-Prot:P06663" FT /protein_id="AAA96971.2" FT /translation="MENDPRVRKFASDGAQWAIKWQKKGWSTLTSRQKQTARAAMGIKL FT SPVAQPVQKVTRLSAPVALAYREVSTQPRVSTARDGITRSGSELITTLKKNTDTEPKYT FT TAVLNPSEPGTFNQLIKEAAQYEKYRFTSLRFRYSPMSPSTTGGKVALAFDRDAAKPPP FT NDLASLYNIEGCVSSVPWTGFILTVPTDSTDRFVADGISDPKLVDFGKLIMATYGQGAN FT DAAQLGEVRVEYTVQLKNRTGSTSDAQIGDFAGVKDGPRLVSWSKTKGTAGWEHDCHFL FT GTGNFSLTLFYEKAPVSGLENADASDFSVLGEAAAGSVQWAGVKVAERGQGVKMVTTEE FT QPKGKWQALRI" XX SQ Sequence 4054 BP; 1089 A; 978 C; 1112 G; 875 T; 0 other; ggtaatctgc aaatccctgg cacccgccta aaattgccct catcaacctt ctctctattc 60 acgatgcctc ttctacacac actcaacaca gcgctcgcag tgggactcct aggagccagg 120 tactaccctg aggttcaaac cttcttgggg ctgcctgact acgtgggtca catgaagaat 180 gtagtacggt ctgttttcca gggatctggg ctagtagtag tgtcctccga cacagtcggt 240 gtcaggggga cgtatagtaa tagaggtcag ataggtagta gtctcgggtg tatactagcc 300 gttccggata gcggggcgga tatagaaata gacttagata ggttggtagg aacggaagag 360 gaagccacat cctgtttggt ggaggcggta ggtagtaccg cagatgtccc caggaggaga 420 gttcgtcaaa aggggcggtt tgccatgcat gccgtcaacg cagcaaagct gcacttttgt 480 ggcgtcccaa aacccactga agcgaatcga ctagcggtct caaaatggct tgtccaatac 540 tgcaaagaga gacatgtcgt agacagccac atcagaacga tagtcaatac ggctcttcct 600 agagtgttca cgcctgacgc ggaagacatt caggtcgtgc tggatttgca cagtgtaaga 660 gcacacgacc accgcaacgc cctagccgaa gcaggcaaag tgcggaagtg gtgggtcaat 720 ctcgcgatgc atcccatgac tgggaggtcg tggtccaggg cttggaggcg attatgccga 780 ctgcctgacg accaggcgat ctcttttgtc cgctaggggt gcttgcggga gctggtcggg 840 agggagactc aaatctccag gggtgaaaac ccggccatgc gcgtgttccc gttagcaaat 900 cccccgaagg ttcgacgcat cttccatatc tgtggaatgg gcaatggttt agactttgga 960 gtccacaaca actcactcaa caatttgaga agagggttga tggaaagagt cttttacgtt 1020 gaagatgcgc agaagcaatt gaaaccagcc ccccaaccga tcccagggat tttcgggaag 1080 ttgagtggga ttcggagacg attggtcagg ttggccggaa atcatacccc tgtgcctcgg 1140 gagaaatacc cgtcgttcta caagggcagg agggccacca tataccaaaa ggctttggat 1200 tctctacatg acagaccggt atcccggaag gacgcagaac tcaaaacatt cgtgaaggca 1260 gaaaagatca atttcacggc taagaaagac ccggctccac gggtcatcca gccgagggac 1320 ccacgatata atattgaggt tgggaaatac ttgaaaccgt acgagcacca tttatatcgg 1380 gcaattgacg ctatgtgggg tgggcccact gtgctgaaag gatacgatgt gggggagctt 1440 ggaaacatta tgagtaacac ctgggataaa ttccggaaaa cgtgtgcgat aggatttgac 1500 atgaagagat tcgaccagca cgtatccgtg gacgccctac gatgggaaca cagtgtatac 1560 aacgcgggct ttaactgtcc cgagttggca cagctgctaa cttggcagtt gaccaacaag 1620 ggggttggga gagcctccga tggctttatc aaataccaag ttgatggttg tcgcatgtcc 1680 ggagatgtta acacagcctt gggcaactgc ctactggctt gctctatcac caagtactta 1740 atgaagggaa tcaaatgcaa attaatcaac aatggagacg attgtgtgct gttcttcgaa 1800 gctgatgaag tcgacagggt gcgcgaaagg ctgcatcatt ggatcgactt tgggtttcaa 1860 tgcatagcgg aagaaccaca atacgaattg gagaaagttg aattttgcca gatgtcccct 1920 attttcgatg gtgaagggtg ggtcatggtc agaaaccccc gtgtgagcct ctccaaggac 1980 agctacagca ccacacaatg ggcgaatgag aaagatgcag ccagatggtt ggctgccatc 2040 ggagagtgtg gcttggctat tgcaggtggc gtaccagtgt tacaatcata ttattcttgc 2100 ctgaagagga attttggacc cctggccggg gactacaaga agaagatgca agatgtttcc 2160 tttgatagtg gattctacag gttatccaag aacgggatga ggggcagcaa agacgtgtcc 2220 caagatgcta ggttcagctt ttaccggggg ttcggctaca ctccagacga gcaggaagcg 2280 cttgaggagt actacgacaa cctcgaactg ctctgtgagt gggaccccac gggatataaa 2340 gaagaactta gtgatagatg gatcctgaac gaattcccta caactctcta agcgacagcg 2400 acgcaacagg aaaacggaag aaaggcggag agaaaagtgc gaagaagaga ttggtagcta 2460 gccacgcggc tagctctgtt ttaaacaaga aaagaaatga aggttctgct agtcacgggg 2520 gtacttgggt tattgttgct gataaagtgg aagtctcaat caacttcaac ttctaatcag 2580 acatgtcagt gcccgacgtc cccgtgggta atatatgctt tctacaactc tctctcactg 2640 gtcctcctac tttgtcatct gattcctgaa atcaaaccga ttcacacatc ctacaacaca 2700 cacgactcat cgaagcagca acacataagc atcaacactg gaaatggaaa atgatcctag 2760 agtccggaag ttcgcatctg atggcgccca atgggcgata aagtggcaga agaagggctg 2820 gtcaacccta accagcagac agaaacagac cgcccgcgca gcgatgggga tcaagctctc 2880 tcctgtggcg caacctgtgc agaaagtgac tcggctgagt gctccggtgg cccttgccta 2940 ccgcgaggtt tccacccagc ctcgggtctc tactgccagg gacggcataa ccagaagcgg 3000 ttctgaactg atcacaacct tgaagaagaa cactgacact gaacctaagt acaccacagc 3060 tgtgcttaac ccaagcgaac ccggaacatt caaccagctc attaaggagg cggcccagta 3120 tgaaaaatac cgattcacgt cactcagatt taggtactcc cccatgagcc cttcaaccac 3180 cggaggcaag gtggctctgg cattcgaccg agatgcagcc aaacctccgc ccaacgacct 3240 cgcttccctc tacaacatag agggttgtgt atctagcgtg ccctggacag ggtttatttt 3300 gaccgtccca acagattcta ctgaccgctt tgtggcggat ggtatcagcg atccaaagct 3360 tgtcgatttc ggcaagctca tcatggccac ctacggccaa ggagccaatg atgccgccca 3420 actcggtgaa gtgcgagtcg agtacaccgt gcagctcaag aacagaactg gctcaaccag 3480 cgacgcccag attggggact tcgcaggtgt taaggacgga cccaggctgg tttcatggtc 3540 caagaccaag gggacagctg ggtgggagca cgattgtcat tttctcggaa ccggaaactt 3600 ctcgttgaca ttgttctacg agaaggcgcc ggtctcgggg ctagaaaacg cagacgcctc 3660 tgacttctcg gtcctgggag aagccgcagc aggtagtgtc caatgggcag gagtgaaggt 3720 agcagaaagg ggacaaggcg tgaaaatggt cacaactgag gagcagccaa agggtaaatg 3780 gcaagcactc agaatttagt acggtaatag tgtagtcttc tcatcttagt agttagctct 3840 ctcttatatt aagaaaagaa aacaaaaacc cccaggtcgc tttattttga cctgtgttag 3900 ggaccaaaaa cggtggcagc actgtctagc tgcgggcatt agactggaaa actagtgctc 3960 tttgggtaac cactaaaatc ccgaaagggt gggctgtggt gaccttccga actaaaagat 4020 agcctccctc ctcgcgcggg gggggggcct gccc 4054 //