ID M21958; SV 1; linear; genomic RNA; STD; VRL; 4776 BP. XX AC M21958; M31019; XX DT 26-APR-1990 (Rel. 23, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Tomato bushy stunt virus complete genome. XX KW capsid protein; coat protein; complete genome; p19 protein; p22 gene; KW p33 protein; p41 protein; p92 protein. XX OS Tomato bushy stunt virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 2621-4776 RX DOI; 10.1016/0042-6822(89)90039-1. RX PUBMED; 2922927. RA Hillman B.I., Hearne P., Rochon D., Morris T.J.; RT "Organization of tomato bushy stunt virus genome: characterization of the RT coat protein gene and the 3' terminus"; RL Virology 169(1):42-50(1989). XX RN [2] RP 1-4776 RX DOI; 10.1016/0042-6822(90)90468-7. RX PUBMED; 2353450. RA Hearne P.Q., Knorr D.A., Hillman B.I., Morris T.J.; RT "The complete genome structure and synthesis of infectious RNA from clones RT of tomato bushy stunt virus"; RL Virology 177(1):141-151(1990). XX DR MD5; 4786a040e9629a8edb160036cd025e41. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC3416697; 22559081. DR EuropePMC; PMC3836746; 24278346. DR EuropePMC; PMC4226233; 25426109. DR EuropePMC; PMC4286711; 25598788. DR EuropePMC; PMC5411025; 28459807. DR EuropePMC; PMC5787849; 28640945. DR EuropePMC; PMC6217261; 30555840. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00215; Tombus_3_III. DR RFAM; RF00510; Tombus_IRE. XX CC Draft entry and computer-readable sequence [1] kindly submitted by CC P.Q.Hearne, 16-DEC-1988. Draft entry and computer-readable CC sequence for [2] kindly submitted by D.Knorr, 21-DEC-1989. The 5' CC terminal nucleotide was not determined. However, in the infectious CC constructs, two 5' terminal 'g' residues are added, one of which is CC removed during subsequent replication in host plants. XX FH Key Location/Qualifiers FH FT source 1..4776 FT /organism="Tomato bushy stunt virus" FT /strain="cherry" FT /mol_type="genomic RNA" FT /db_xref="taxon:12145" FT CDS 166..2622 FT /codon_start=1 FT /transl_except=(pos:1054..1056,aa:OTHER) FT /product="p92 protein" FT /note="read-through of p33" FT /db_xref="GOA:P15962" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/Swiss-Prot:P15962" FT /protein_id="AAB02535.1" FT /translation="METIKRMIWPKKEIFVGDFATGVNRTVPVNIFQLVCRVVLRYMRT FT GKIECDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYIVPLSIASIPIIPLLSYATRV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRTGPPNAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARTPQPTKGAFGRLSPFRKAV FT CEKVGVAHRLGYDGFLSYYSGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFRAK FT WDRFDKPVAIGLDASRFDQHCSVEALQYEHSFYRAMYPGNKLLGKLLEWQLHNKGKGYV FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLIVER FT RNLKQIQRTLPEYFLNLGYTMKVEQPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK FT DVHCVNNIRDLATRRAWSNAQHHGGLALSAGIPVVETFYSRFKLYDVPRKHQRIDTVTN FT VHKWRGSGGSYVVTPESRASFWAAFGLTGDEQLALEDRLERWEMDLFGEEGVDAHEPSI FT LDSAVA" FT CDS 166..1056 FT /codon_start=1 FT /product="p33 protein" FT /db_xref="GOA:P15962" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/Swiss-Prot:P15962" FT /protein_id="AAB02534.1" FT /translation="METIKRMIWPKKEIFVGDFATGVNRTVPVNIFQLVCRVVLRYMRT FT GKIECDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYIVPLSIASIPIIPLLSYATRV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVK" FT mRNA 2621..4776 FT /note="2.2kb subgenomic mRNA" FT CDS 2652..3818 FT /codon_start=1 FT /product="p41 capsid protein" FT /db_xref="GOA:P11689" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P11689" FT /protein_id="AAB02536.1" FT /translation="MAMVKRNNNTGMIPVSTKQLLALGAAAGATALQGFVKNNGMAIVE FT GAVDLTKRAYKAVRRRGGKKQQMINHVGGTGGAIMAPVAVTRQLVGSKPKFTGRTSGSV FT TVTHREYLSQVNNSTGFQVNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYTFNSVVLH FT YVPLCSTTEVGRVAIYFDKDSEDPEPADRVELANYSVLKETAPWAEAMLRVPTDKIKRF FT CDDSSTSDHKLIDLGQLGIATYGGAGTNAVGDIFISYSVTLYFPQPTNTLLSTRRLDLA FT GALVTASGPGYLLVSRTATVLTMTFRATGTFVISGTYRCLTATTLGLAGGVNVNSITVV FT DNIGTDSAFFINCTVSNLPSVVTFTSTGITSATVHCVRATRQNDVSLI" FT mRNA 3841..4776 FT /note="0.9kb subgenomic mRNA" FT CDS 3856..4425 FT /codon_start=1 FT /product="p22 protein" FT /db_xref="GOA:P11691" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/Swiss-Prot:P11691" FT /protein_id="AAB02537.1" FT /translation="MDTEYEQVNKPWNELYKETTLGNKLTVNVGMEDQEVPLLPSNFLT FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW FT KVMYQEDALKVLRPSKKKASKTDSSV" FT CDS 3888..4406 FT /codon_start=1 FT /product="p19 protein" FT /db_xref="GOA:P11690" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="PDB:1R9F" FT /db_xref="UniProtKB/Swiss-Prot:P11690" FT /protein_id="AAB02538.1" FT /translation="MERAIQGNDAREQANSERWDGGSGGTTSPFKLPDESPSWTEWRLH FT NDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFG FT FDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQELLQLAPIEVESNVSRGCPEG FT TETFEKESE" XX SQ Sequence 4776 BP; 1257 A; 983 C; 1315 G; 1220 T; 1 other; naaattctcc aggatttctc gacctagttc gtttatctgg tgacttgcgc taccgttgct 60 ttgcgtagag aatttctctc cataattatt atctttagtt gtggggtttg aaggttgggt 120 ctacctttcg gggggataaa ttgtaacttc caacaaacaa gcgacatgga gaccatcaag 180 agaatgattt ggcctaagaa agagattttt gtgggtgatt tcgcaaccgg agtgaatagg 240 acagttccgg tgaacatctt tcaattggtg tgtcgtgtgg ttctgagata catgaggaca 300 gggaaaatag agtgtgattc tgacagcatg actaagttta tagttgaatt actcaaaact 360 gattgtgctg ccaaatggga atggttcatg aagagacggc agaggggtga ttacattgtc 420 cctctatcta tagcctccat accaatcata ccgctgttga gttatgccac tagggtacgc 480 gcagtctcag tcaaggcttt tggcaatgaa ctatcgttca atgtcagggt gcctagacca 540 tctgtaccta agaaaggatt gctcctcaga ctggcggcag gtctagcgtt agctcctata 600 tgcgcgctgg ccgtgtacgc taccctacct agggaaaaac tgtcggtatt taagctgaga 660 actgaggcac gagcacacat ggaggatgag agagaagcga cagattgtct ggtggttgag 720 ccggcaaggg aacttaaggg taaagatggt gaggatctcc tcactggtag tagattgact 780 aaggtgatcg cgtccactgg gcgccctcgt cgaagacctt atgcggcaaa gatcgcacag 840 gtggcgagag caaaggtggg ttaccttaag aacagtccag agaatagact aatctaccag 900 agggtgatga tcgagatcat ggacaaagac tgcgtcaggt atgttgacag ggatgtcata 960 ttgcctttgg ctattggatg ctgttttgtc tatccggatg gagtggagga gtcggcggca 1020 ctatggggct cacaggagtc cctgggtgtc aaatagggag gcctagtacg tctacctggg 1080 gttgtaacac agatcaatcg agatatccca tctgatgtgt tacttcctca ggaggtgcta 1140 gaggttcgta caggacctcc caatgctaag gaccgtaata tatttatggt tgcaggttgc 1200 ccatcacagg cacggttctt agtacataat cactgcctga aaaaccttaa aaggggtctt 1260 gtggagagag tcttctgcgt agagagaaac gggaagctcg ctcgcactcc acaacctacc 1320 aaaggagcct ttggacgtct ttccccgttc aggaaagcgg tttgtgagaa ggttggggta 1380 gcccaccgac ttgggtatga tgggtttctg tcatactaca gcggtgcgaa actccgtact 1440 tacacacgag ccgtggagag tctgcatatc acacctgtct ccgagaggga tagtcacttg 1500 actaccttcg taaaagcaga gaagatatcg acgtctaagg gtgacccagc acctcgggtg 1560 attcagcctc gaaacccgag gtacaatgtg gaacttggaa gatatctacg gcatatggaa 1620 tccaagctga tgaaagctgt tgatggcgtg ttcggagaga cgacatgcat caaaggatac 1680 acagctgatg aggtaggtgc aattttccgg gctaaatggg acaggtttga taagcctgtc 1740 gccatagggc tcgatgcatc taggtttgat caacactgtt ccgttgaagc attgcaatat 1800 gagcatagct tctacagggc catgtaccct ggcaacaagc tcttgggcaa gttgttggaa 1860 tggcagctcc ataataaagg taaaggttat gttccagatg gaactataac ctatcgcaag 1920 gagggctgtc gcatgagtgg ggatataaac acctcgttgg gcaactatct actgatgtgt 1980 gcaatggtac atgggtacat gcgtcatctg gggattaatg agtttagtct ggcaaactgt 2040 ggggatgatt gcgtcctaat tgtcgaacgc aggaatctta agcagataca gagaacttta 2100 ccggagtatt tcctcaatct gggatatact atgaaggtgg agcaacctgt atttcaactg 2160 gaagaggttg aattttgcca ggcacaccca gtacagtttc aaggcggttg gaagatggtt 2220 cgaaacgtcc gtactgctat gagcaaggat gtgcactgtg tcaacaatat acgcgatttg 2280 gcgacgagga gagcttggag taatgctcaa catcatgggg gtctagcgct tagtgctggt 2340 attccagttg tggagacgtt ttactctagg tttaagcttt atgatgtacc tcgtaaacat 2400 caacgtattg acacggtcac aaatgtgcac aagtggcgtg gatccggtgg gagttatgtt 2460 gtgacccctg aatctagggc tagcttttgg gctgcctttg gactcacggg ggatgagcaa 2520 ctggctctgg aggaccgtct ggaaagatgg gagatggatc tgtttggaga ggagggtgtt 2580 gacgctcatg agcccagcat cctcgactcc gccgtagctt gaccaagaat acacacacgc 2640 aggatagaca catggcaatg gtaaagagaa acaacaacac gggaatgatc ccggtgagta 2700 caaagcaatt actggcattg ggtgcggccg ctggggccac agccttgcag ggatttgtca 2760 agaataatgg gatggccatc gttgaggggg ctgtcgatct gactaaaaga gcgtacaaag 2820 cagtgcggag aagaggaggt aagaaacagc agatgattaa tcatgtaggt ggtacaggtg 2880 gtgctataat ggcgccggta gcagtgacta gacaacttgt cggtagtaag cctaagttta 2940 ctggcaggac gtctggctct gtcacagtta cccaccgtga gtatctgtca caagtgaata 3000 attccacggg tttccaagtt aatgggggaa ttgtcggcaa tttgttacag cttaacccgt 3060 tgaatggtac attgttctct tggttgccag cgatagcatc caattttgat cagtacacat 3120 tcaacagcgt tgtgctacat tatgtgcccc tatgttcaac tactgaggta gggagagtgg 3180 ctatttactt tgataaggac tcagaagatc cagaacctgc tgatagagtt gagttggcga 3240 attacagcgt gcttaaagag acagcccctt gggctgaagc gatgcttagg gtacccaccg 3300 ataagattaa gagattttgt gatgacagtt ccacatctga tcacaaactt atcgacttgg 3360 gtcaattggg cattgctaca tatggtggcg ctgggactaa tgctgtgggg gatatcttta 3420 tctcgtacag tgttacgtta tatttccctc aacctacgaa cacactcctt agtaccagaa 3480 ggctcgacct tgctggcgct cttgtcacag catctggccc tggatacctc ctggtgtcta 3540 ggactgccac tgtattgaca atgacattcc gtgctacagg cacgtttgtc atatccggga 3600 cgtatcggtg cctcacggca acaacgttag gcttggctgg cggagtgaat gtcaatagta 3660 tcacagttgt agataacata ggtacagaca gtgcgttttt cataaattgt actgtctcta 3720 acctaccatc tgtggtgaca ttcacatcta ccggtatcac atctgccaca gtacattgcg 3780 tgcgcgcgac acgacagaat gatgtttctc taatttagtg tgtcctgcga ggggcctctt 3840 gaacaagacc agttcatgga tactgaatac gaacaagtca ataaaccatg gaacgagcta 3900 tacaaggaaa cgacgctagg gaacaagcta acagtgaacg ttgggatgga ggatcaggag 3960 gtaccacttc tcccttcaaa cttcctgacg aaagtccgag ttggactgag tggcggctac 4020 ataacgatga gacgaattcg aatcaagata atccccttgg tttcaaggaa agctggggtt 4080 tcgggaaagt tgtatttaag agatatctca gatacgacag gacggaagct tcactgcaca 4140 gagtccttgg atcttggacg ggagattcgg ttaactatgc agcatctcga tttttcggtt 4200 tcgaccagat cggatgtacc tatagtattc ggtttcgagg agttagtatc accgtttctg 4260 gagggtcgcg aactcttcag catctctgtg agatggcaat tcggtctaag caagaactgc 4320 tacagcttgc cccaatcgaa gtggaaagta atgtatcaag aggatgccct gaaggtactg 4380 agaccttcga aaaagaaagc gagtaagaca gactcttcag tctgagtttg tggagatgag 4440 tgtaaatctg gcatagcata caggttactc ttgttgggtt ctggatgtta ggatgacgag 4500 tcgactcggg ctccgcacta ggtttggtcg cctaggggat ggagatatgg aaagggtctc 4560 gtgtggtatc agtcggtcga aagacgcgct tccaacatgg gcctatggtc ggataagtct 4620 tagcaatacc agccagcatg aattggattc ctgtttacga aagttaggtg tcacttgtgg 4680 aagcggaccc agacacggtt gatctcaccc ttcggggggc tatagagatc gctggaagca 4740 ctaccggaca accggaacat tgcagaaatg cagccc 4776 //